Initializing AMReX (25.03-10-gc35770e39300)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-10-gc35770e39300) initialized Starting run at 05:29:37 UTC on 2025-03-17. Successfully read inputs file ... Castro git describe: 25.03-8-gc82230870 AMReX git describe: 25.03-10-gc35770e39 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014709064 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345599307 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.345858557 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.309673529 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.310973766 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357974896 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305607225 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296549502 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296554381 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29752204 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296710646 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007556293 seconds Ending run at 05:29:41 UTC on 2025-03-17. Run time = 3.361530403 Run time without initialization = 3.175191445 Average number of zones advanced per microsecond: 0.826 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3561 ... 3.3600 ... 3.3618 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1839 2.2207 2.2792 67.80% Gravity::make_radial_gravity() 21 0.292 0.2978 0.3112 9.26% check_for_negative_density() 10 0.03634 0.09825 0.1378 4.10% Castro::estTimeStep() 21 0.02195 0.07313 0.1146 3.41% Castro::initData() 1 0.0371 0.073 0.1131 3.36% amrex::Copy() 193 0.06365 0.078 0.08659 2.58% FabArray::ParallelCopy_finish() 41 0.03653 0.04696 0.08616 2.56% FabArray::setVal() 143 0.05323 0.06548 0.07147 2.13% Castro::reset_internal_energy(Fab) 1008 0.04348 0.04536 0.0484 1.44% Castro::normalize_species() 62 0.04503 0.04583 0.04695 1.40% FabArray::ParallelCopy_nowait() 41 0.03565 0.04071 0.04297 1.28% FillPatchIterator::Initialize 41 0.02752 0.03233 0.03477 1.03% StateData::FillBoundary(geom) 41 0.02972 0.03197 0.0338 1.01% Gravity::interpolate_monopole_grav() 21 0.02669 0.02694 0.02733 0.81% Castro::construct_new_gravity_source() 10 0.02327 0.02461 0.02697 0.80% Castro::computeTemp() 63 0.01735 0.01803 0.01876 0.56% Castro::initialize_do_advance() 10 0.01151 0.01624 0.01745 0.52% Castro::initialize_advance() 10 0.005307 0.01076 0.01397 0.42% FabArray::Saxpy() 20 0.01045 0.01231 0.01347 0.40% MultiFab::contains_nan() 20 0.01053 0.01134 0.01277 0.38% Amr::writePlotFile() 2 0.007525 0.01048 0.01258 0.37% VisMF::Write(FabArray) 2 0.008736 0.009632 0.0123 0.37% Castro::initMFs() 1 0.006464 0.007592 0.01076 0.32% FabArray::setDomainBndry() 41 0.007626 0.009534 0.01073 0.32% Castro::construct_old_gravity_source() 10 0.006959 0.009455 0.01003 0.30% StateData::define() 4 0.005272 0.006166 0.008499 0.25% Castro::construct_new_source() 50 0.00567 0.005991 0.006268 0.19% main() 1 0.003545 0.0038 0.004052 0.12% Gravity::get_new_grav_vector() 11 0.002874 0.003497 0.003822 0.11% Amr::coarseTimeStep() 10 0.0008554 0.001896 0.002581 0.08% Gravity::get_old_grav_vector() 10 0.001749 0.002039 0.002487 0.07% Castro::finalize_do_advance() 10 0.0005591 0.00107 0.001641 0.05% AmrLevel::FillPatch() 41 0.0007193 0.001056 0.001209 0.04% Amr::timeStep() 10 0.0001351 0.0001757 0.0003516 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002814 0.0002937 0.000305 0.01% Castro::do_advance_ctu() 10 0.0001337 0.0001613 0.0001798 0.01% Castro::clean_state() 62 0.0001311 0.0001517 0.0001733 0.01% StateDataPhysBCFunct::() 41 0.0001023 0.000121 0.0001527 0.00% FillPatchIterator::FillFromLevel0() 41 9.304e-05 0.0001038 0.00011 0.00% Castro::do_old_sources() 10 7.048e-05 9.218e-05 0.0001059 0.00% FabArray::ParallelCopy() 41 7.081e-05 8.595e-05 9.621e-05 0.00% Castro::Castro() 1 6.695e-05 7.702e-05 8.996e-05 0.00% Amr::FinalizeInit() 1 3.953e-06 1.337e-05 7.441e-05 0.00% FillPatchSingleLevel 41 5.809e-05 6.752e-05 7.425e-05 0.00% Castro::construct_old_source() 50 4.034e-05 6.239e-05 7.195e-05 0.00% Castro::do_new_sources() 10 4.832e-05 6.434e-05 6.976e-05 0.00% Castro::apply_source_to_state() 20 3.712e-05 5.214e-05 6.837e-05 0.00% Amr::defBaseLevel() 1 4.06e-05 5.067e-05 6.432e-05 0.00% Castro::subcycle_advance_ctu() 10 4e-05 4.624e-05 5.366e-05 0.00% Castro::construct_old_gravity() 10 3.764e-05 4.219e-05 5.191e-05 0.00% Castro::advance() 10 3.769e-05 4.5e-05 5.112e-05 0.00% Castro::construct_new_gravity() 10 3.155e-05 3.684e-05 4.454e-05 0.00% Castro::post_init() 1 1.458e-05 1.834e-05 3.232e-05 0.00% Castro::expand_state() 10 1.999e-05 2.463e-05 2.942e-05 0.00% Castro::check_for_nan() 20 2.282e-05 2.533e-05 2.935e-05 0.00% Castro::post_timestep() 10 1.423e-05 1.669e-05 2.01e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.511e-06 1.079e-05 1.999e-05 0.00% Castro::computeNewDt() 9 8.894e-06 1.007e-05 1.104e-05 0.00% Amr::InitializeInit() 1 2.338e-06 3.453e-06 5.192e-06 0.00% Castro::computeInitialDt() 2 3.085e-06 3.77e-06 4.456e-06 0.00% Amr::init() 1 1.744e-06 2.118e-06 2.847e-06 0.00% Amr::initialInit() 1 1.686e-06 2.031e-06 2.722e-06 0.00% Other 256 0.0106 0.01614 0.01943 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.356 3.36 3.362 100.00% Amr::coarseTimeStep() 10 3.164 3.164 3.164 94.11% Amr::timeStep() 10 3.151 3.152 3.153 93.79% Castro::advance() 10 3.136 3.136 3.137 93.31% Castro::subcycle_advance_ctu() 10 3.06 3.065 3.079 91.60% Castro::do_advance_ctu() 10 3.06 3.065 3.079 91.60% Castro::construct_ctu_hydro_source() 10 2.336 2.34 2.343 69.69% Gravity::make_radial_gravity() 21 0.3087 0.3139 0.3238 9.63% AmrLevel::FillPatch() 41 0.1826 0.1941 0.2146 6.38% Gravity::get_new_grav_vector() 11 0.2093 0.2106 0.2115 6.29% Castro::construct_old_gravity() 10 0.1791 0.184 0.1924 5.72% Gravity::get_old_grav_vector() 10 0.1784 0.1833 0.1917 5.70% Castro::construct_new_gravity() 10 0.1876 0.1883 0.1895 5.64% FillPatchIterator::Initialize 41 0.1511 0.162 0.1891 5.62% Amr::init() 1 0.1809 0.1847 0.1863 5.54% Amr::initialInit() 1 0.1657 0.1697 0.1714 5.10% Castro::initialize_do_advance() 10 0.1565 0.1622 0.1685 5.01% FillPatchIterator::FillFromLevel0() 41 0.1109 0.1201 0.1539 4.58% FillPatchSingleLevel 41 0.1108 0.12 0.1538 4.58% Amr::InitializeInit() 1 0.06125 0.09819 0.1397 4.16% Amr::defBaseLevel() 1 0.06124 0.09819 0.1397 4.16% check_for_negative_density() 10 0.03634 0.09825 0.1378 4.10% FabArray::ParallelCopy() 41 0.07846 0.08784 0.122 3.63% Castro::expand_state() 10 0.1012 0.1088 0.121 3.60% Castro::clean_state() 62 0.1124 0.1149 0.1198 3.56% Castro::initData() 1 0.04057 0.07663 0.1167 3.47% Castro::estTimeStep() 21 0.02195 0.07313 0.1146 3.41% Amr::FinalizeInit() 1 0.02636 0.07146 0.1088 3.24% Castro::do_old_sources() 10 0.08994 0.09265 0.09517 2.83% amrex::Copy() 193 0.06365 0.078 0.08659 2.58% FabArray::ParallelCopy_finish() 41 0.03653 0.04696 0.08616 2.56% Castro::computeInitialDt() 2 0.002124 0.04738 0.08464 2.52% Castro::initialize_advance() 10 0.05319 0.0681 0.07354 2.19% FabArray::setVal() 143 0.05323 0.06548 0.07147 2.13% Castro::do_new_sources() 10 0.05994 0.06355 0.06918 2.06% Castro::computeTemp() 63 0.06113 0.06368 0.06747 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04377 0.04566 0.0487 1.45% Castro::reset_internal_energy(Fab) 1008 0.04348 0.04536 0.0484 1.44% Castro::normalize_species() 62 0.04503 0.04583 0.04695 1.40% FabArray::ParallelCopy_nowait() 41 0.03574 0.0408 0.04304 1.28% StateDataPhysBCFunct::() 41 0.02983 0.03209 0.03392 1.01% StateData::FillBoundary(geom) 41 0.02972 0.03197 0.0338 1.01% Castro::construct_new_source() 50 0.02911 0.0306 0.03322 0.99% Gravity::interpolate_monopole_grav() 21 0.02669 0.02694 0.02733 0.81% Castro::construct_new_gravity_source() 10 0.02327 0.02461 0.02697 0.80% Castro::post_init() 1 0.02345 0.02355 0.02367 0.70% Amr::writePlotFile() 2 0.02249 0.02263 0.02301 0.68% Castro::finalize_do_advance() 10 0.0125 0.01818 0.02237 0.67% Castro::post_timestep() 10 0.01505 0.01554 0.01625 0.48% Castro::Castro() 1 0.01029 0.0116 0.01483 0.44% Castro::apply_source_to_state() 20 0.01049 0.01236 0.01354 0.40% FabArray::Saxpy() 20 0.01045 0.01231 0.01347 0.40% Castro::check_for_nan() 20 0.01056 0.01136 0.0128 0.38% MultiFab::contains_nan() 20 0.01053 0.01134 0.01277 0.38% VisMF::Write(FabArray) 2 0.008736 0.009632 0.0123 0.37% Castro::initMFs() 1 0.006464 0.007592 0.01076 0.32% FabArray::setDomainBndry() 41 0.007626 0.009534 0.01073 0.32% Castro::construct_old_source() 50 0.006999 0.009517 0.0101 0.30% Castro::construct_old_gravity_source() 10 0.006959 0.009455 0.01003 0.30% Castro::computeNewDt() 9 0.008641 0.008655 0.008667 0.26% AmrLevel::AmrLevel(dm) 1 0.005279 0.006176 0.008519 0.25% StateData::define() 4 0.005272 0.006166 0.008499 0.25% Other 256 0.015 0.0247 0.02997 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8660 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6734 KiB 6743 KiB 6755 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7123 KiB 7134 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4547 KiB 4557 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 203 KiB 218 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2799 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 238 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 40 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-10-gc35770e39300) finalized