Initializing AMReX (25.03-10-gc35770e39300)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-10-gc35770e39300) initialized Starting run at 05:20:33 UTC on 2025-03-18. Successfully read inputs file ... Castro git describe: 25.03-8-gc82230870 AMReX git describe: 25.03-10-gc35770e39 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020083826 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.425423458 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.385017989 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.373391884 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.394073424 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372899579 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.372883151 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.372251074 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.373164361 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.380899051 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.378807834 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012259995 seconds Ending run at 05:20:37 UTC on 2025-03-18. Run time = 4.039780858 Run time without initialization = 3.849024725 Average number of zones advanced per microsecond: 0.681 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.0387 ... 4.0394 ... 4.0402 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3441 2.5343 2.7240 67.42% check_for_negative_density() 10 0.01915 0.2135 0.4102 10.15% Gravity::make_radial_gravity() 21 0.296 0.313 0.3319 8.21% amrex::Copy() 193 0.1023 0.122 0.1375 3.40% FabArray::setVal() 143 0.09754 0.1038 0.1084 2.68% Castro::initData() 1 0.03708 0.07364 0.1063 2.63% Castro::estTimeStep() 21 0.02926 0.06007 0.09891 2.45% FabArray::ParallelCopy_finish() 41 0.05839 0.06672 0.08627 2.14% FabArray::ParallelCopy_nowait() 41 0.05893 0.06627 0.07165 1.77% FillPatchIterator::Initialize 41 0.05091 0.05784 0.06346 1.57% Castro::reset_internal_energy(Fab) 1008 0.0499 0.05148 0.05338 1.32% Castro::normalize_species() 62 0.04718 0.04889 0.05082 1.26% StateData::FillBoundary(geom) 41 0.03529 0.04173 0.04753 1.18% Castro::construct_new_gravity_source() 10 0.02997 0.03261 0.03488 0.86% Castro::initialize_do_advance() 10 0.02456 0.02648 0.03026 0.75% Gravity::interpolate_monopole_grav() 21 0.02674 0.02691 0.02724 0.67% FabArray::Saxpy() 20 0.01844 0.02009 0.02188 0.54% FabArray::setDomainBndry() 41 0.01832 0.0202 0.02182 0.54% Castro::computeTemp() 63 0.01933 0.02047 0.02152 0.53% Amr::writePlotFile() 2 0.01033 0.01388 0.01845 0.46% Castro::initialize_advance() 10 0.01581 0.0166 0.01726 0.43% VisMF::Write(FabArray) 2 0.009759 0.01345 0.01694 0.42% Castro::construct_old_gravity_source() 10 0.01501 0.01601 0.01637 0.41% MultiFab::contains_nan() 20 0.01273 0.01383 0.01509 0.37% Castro::initMFs() 1 0.008949 0.009891 0.0114 0.28% Castro::construct_new_source() 50 0.007237 0.00847 0.00946 0.23% main() 1 0.006943 0.00714 0.007465 0.18% Gravity::get_new_grav_vector() 11 0.004649 0.005605 0.006125 0.15% Gravity::get_old_grav_vector() 10 0.002496 0.003083 0.0036 0.09% Amr::coarseTimeStep() 10 0.001618 0.00193 0.002568 0.06% Castro::finalize_do_advance() 10 0.001279 0.001402 0.001728 0.04% AmrLevel::FillPatch() 41 0.00111 0.00134 0.001723 0.04% Amr::timeStep() 10 0.0001607 0.0002366 0.0005989 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00034 0.0003548 0.0003721 0.01% Castro::do_advance_ctu() 10 0.0002158 0.0002387 0.0002745 0.01% Castro::clean_state() 62 0.000199 0.0002149 0.0002378 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001445 0.0001646 0.0001913 0.00% Castro::Castro() 1 6.721e-05 0.0001244 0.0001912 0.00% StateDataPhysBCFunct::() 41 0.000127 0.0001605 0.0001775 0.00% Castro::do_old_sources() 10 0.0001435 0.0001513 0.0001605 0.00% FabArray::ParallelCopy() 41 0.0001302 0.0001406 0.0001563 0.00% Castro::construct_old_source() 50 9.611e-05 0.0001056 0.0001185 0.00% Castro::apply_source_to_state() 20 7.388e-05 8.528e-05 0.0001106 0.00% FillPatchSingleLevel 41 9.558e-05 0.0001009 0.0001086 0.00% Amr::FinalizeInit() 1 5.743e-06 1.941e-05 0.0001062 0.00% Castro::do_new_sources() 10 7.669e-05 8.799e-05 0.0001002 0.00% Castro::subcycle_advance_ctu() 10 6.321e-05 7.431e-05 9.032e-05 0.00% Castro::advance() 10 6.273e-05 6.97e-05 7.696e-05 0.00% Castro::construct_old_gravity() 10 5.127e-05 5.64e-05 7.158e-05 0.00% Castro::construct_new_gravity() 10 3.228e-05 4.575e-05 6.375e-05 0.00% Amr::defBaseLevel() 1 4.283e-05 5.096e-05 6.366e-05 0.00% Castro::expand_state() 10 3.84e-05 4.607e-05 5.873e-05 0.00% Castro::check_for_nan() 20 3.141e-05 3.451e-05 3.867e-05 0.00% Castro::post_init() 1 1.549e-05 2.064e-05 3.303e-05 0.00% Castro::post_timestep() 10 1.698e-05 2.024e-05 2.257e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.265e-06 1.024e-05 1.33e-05 0.00% Castro::computeNewDt() 9 1e-05 1.129e-05 1.236e-05 0.00% Castro::computeInitialDt() 2 3.72e-06 5.03e-06 5.797e-06 0.00% Amr::InitializeInit() 1 2.637e-06 3.333e-06 5.157e-06 0.00% Amr::init() 1 2.093e-06 2.878e-06 5.135e-06 0.00% Amr::initialInit() 1 1.621e-06 2.199e-06 2.892e-06 0.00% Other 260 0.02034 0.02417 0.02667 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.039 4.039 4.04 100.00% Amr::coarseTimeStep() 10 3.829 3.829 3.829 94.78% Amr::timeStep() 10 3.817 3.818 3.818 94.50% Castro::advance() 10 3.801 3.801 3.802 94.11% Castro::subcycle_advance_ctu() 10 3.69 3.694 3.7 91.58% Castro::do_advance_ctu() 10 3.69 3.694 3.7 91.58% Castro::construct_ctu_hydro_source() 10 2.764 2.77 2.777 68.72% check_for_negative_density() 10 0.01915 0.2135 0.4102 10.15% Gravity::make_radial_gravity() 21 0.323 0.3393 0.3598 8.90% AmrLevel::FillPatch() 41 0.2814 0.304 0.323 8.00% FillPatchIterator::Initialize 41 0.2395 0.2535 0.2631 6.51% Castro::initialize_do_advance() 10 0.2269 0.2442 0.257 6.36% Gravity::get_new_grav_vector() 11 0.2309 0.2323 0.2336 5.78% Castro::construct_old_gravity() 10 0.2009 0.2137 0.2307 5.71% Gravity::get_old_grav_vector() 10 0.2 0.2128 0.23 5.69% Castro::construct_new_gravity() 10 0.2019 0.2034 0.2049 5.07% Amr::init() 1 0.1896 0.1902 0.1908 4.72% Castro::expand_state() 10 0.1529 0.1719 0.1873 4.63% FillPatchIterator::FillFromLevel0() 41 0.1672 0.1754 0.1811 4.48% FillPatchSingleLevel 41 0.1671 0.1753 0.181 4.48% Amr::initialInit() 1 0.1693 0.17 0.1707 4.23% FabArray::ParallelCopy() 41 0.1301 0.1333 0.1455 3.60% Castro::do_old_sources() 10 0.1408 0.1426 0.1446 3.58% amrex::Copy() 193 0.1023 0.122 0.1375 3.40% Amr::InitializeInit() 1 0.06664 0.1032 0.1366 3.38% Amr::defBaseLevel() 1 0.06663 0.1032 0.1366 3.38% Castro::clean_state() 62 0.1266 0.1279 0.1297 3.21% Castro::initData() 1 0.04169 0.07836 0.1105 2.74% FabArray::setVal() 143 0.09754 0.1038 0.1084 2.68% Castro::initialize_advance() 10 0.09623 0.1027 0.1059 2.62% Amr::FinalizeInit() 1 0.03278 0.06673 0.1037 2.57% Castro::estTimeStep() 21 0.02926 0.06007 0.09891 2.45% FabArray::ParallelCopy_finish() 41 0.05839 0.06672 0.08627 2.14% Castro::do_new_sources() 10 0.07605 0.08094 0.08468 2.10% Castro::computeTemp() 63 0.07016 0.07231 0.07527 1.86% Castro::computeInitialDt() 2 0.002252 0.03608 0.07317 1.81% FabArray::ParallelCopy_nowait() 41 0.05906 0.0664 0.07178 1.78% Castro::reset_internal_energy(MultiFab) 63 0.05024 0.05184 0.05375 1.33% Castro::reset_internal_energy(Fab) 1008 0.0499 0.05148 0.05338 1.32% Castro::normalize_species() 62 0.04718 0.04889 0.05082 1.26% StateDataPhysBCFunct::() 41 0.03541 0.04189 0.04771 1.18% StateData::FillBoundary(geom) 41 0.03529 0.04173 0.04753 1.18% Castro::construct_new_source() 50 0.03731 0.04108 0.04432 1.10% Castro::construct_new_gravity_source() 10 0.02997 0.03261 0.03488 0.86% Amr::writePlotFile() 2 0.03239 0.03262 0.03274 0.81% Castro::post_init() 1 0.02985 0.03007 0.03032 0.75% Gravity::interpolate_monopole_grav() 21 0.02674 0.02691 0.02724 0.67% Castro::finalize_do_advance() 10 0.01165 0.01687 0.02333 0.58% Castro::apply_source_to_state() 20 0.01851 0.02018 0.02199 0.54% FabArray::Saxpy() 20 0.01844 0.02009 0.02188 0.54% FabArray::setDomainBndry() 41 0.01832 0.0202 0.02182 0.54% Castro::Castro() 1 0.01528 0.01638 0.01783 0.44% VisMF::Write(FabArray) 2 0.009759 0.01345 0.01694 0.42% Castro::post_timestep() 10 0.01586 0.01625 0.0166 0.41% Castro::construct_old_source() 50 0.01511 0.01612 0.01647 0.41% Castro::construct_old_gravity_source() 10 0.01501 0.01601 0.01637 0.41% Castro::check_for_nan() 20 0.01276 0.01387 0.01513 0.37% MultiFab::contains_nan() 20 0.01273 0.01383 0.01509 0.37% Castro::initMFs() 1 0.008949 0.009891 0.0114 0.28% Castro::computeNewDt() 9 0.008518 0.008532 0.008552 0.21% AmrLevel::AmrLevel(dm) 1 0.007424 0.00778 0.008172 0.20% Other 260 0.02603 0.03129 0.03501 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 28 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8664 KiB 8666 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6788 KiB 6794 KiB 6798 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4565 KiB 4568 KiB 4577 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 261 KiB 287 KiB 307 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2819 KiB 2822 KiB 2823 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 203 KiB 214 KiB 227 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 48 KiB 51 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 67 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-10-gc35770e39300) finalized