Initializing AMReX (25.03-11-gd6ab3a93601a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-11-gd6ab3a93601a) initialized Starting run at 05:19:10 UTC on 2025-03-20. Successfully read inputs file ... Castro git describe: 25.03-8-gc82230870 AMReX git describe: 25.03-11-gd6ab3a936 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015349346 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348998268 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341698023 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.335839569 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.319067848 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.361947107 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.301794762 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295687267 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298043317 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294858199 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297144301 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007428851 seconds Ending run at 05:19:13 UTC on 2025-03-20. Run time = 3.391125048 Run time without initialization = 3.207339594 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3896 ... 3.3903 ... 3.3912 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1751 2.2234 2.2788 67.20% Gravity::make_radial_gravity() 21 0.2975 0.3033 0.3099 9.14% check_for_negative_density() 10 0.0241 0.08112 0.1333 3.93% Castro::initData() 1 0.03768 0.07426 0.1153 3.40% Castro::estTimeStep() 21 0.02991 0.06986 0.1049 3.09% amrex::Copy() 193 0.08074 0.08614 0.09644 2.84% FabArray::setVal() 143 0.06841 0.07283 0.07768 2.29% FabArray::ParallelCopy_finish() 41 0.04527 0.05788 0.06984 2.06% Castro::normalize_species() 62 0.0451 0.04786 0.05389 1.59% Castro::reset_internal_energy(Fab) 1008 0.04558 0.04756 0.05003 1.48% FabArray::ParallelCopy_nowait() 41 0.04111 0.04333 0.04632 1.37% FillPatchIterator::Initialize 41 0.03022 0.03581 0.0396 1.17% StateData::FillBoundary(geom) 41 0.0309 0.03257 0.03547 1.05% Gravity::interpolate_monopole_grav() 21 0.02658 0.02683 0.02729 0.80% Castro::construct_new_gravity_source() 10 0.02314 0.02413 0.02473 0.73% Castro::initialize_do_advance() 10 0.01549 0.01752 0.0218 0.64% Castro::computeTemp() 63 0.01816 0.01862 0.01911 0.56% FabArray::setDomainBndry() 41 0.008986 0.01147 0.01462 0.43% Castro::initialize_advance() 10 0.01099 0.01281 0.01454 0.43% MultiFab::contains_nan() 20 0.01058 0.01151 0.01449 0.43% FabArray::Saxpy() 20 0.01212 0.01295 0.01361 0.40% VisMF::Write(FabArray) 2 0.008941 0.009578 0.01211 0.36% Amr::writePlotFile() 2 0.007735 0.01034 0.01103 0.33% Castro::construct_old_gravity_source() 10 0.008683 0.009597 0.01004 0.30% Castro::initMFs() 1 0.006445 0.006896 0.007876 0.23% Castro::construct_new_source() 50 0.006276 0.006519 0.006699 0.20% Castro::enforce_min_density() 62 0.005859 0.006095 0.006258 0.18% main() 1 0.003531 0.003773 0.004075 0.12% Gravity::get_new_grav_vector() 11 0.002909 0.003545 0.004057 0.12% Amr::coarseTimeStep() 10 0.0008871 0.002639 0.003315 0.10% Gravity::get_old_grav_vector() 10 0.001826 0.002169 0.002383 0.07% AmrLevel::FillPatch() 41 0.0008528 0.0009878 0.001601 0.05% Castro::finalize_do_advance() 10 0.001239 0.001307 0.001418 0.04% Amr::timeStep() 10 0.0001388 0.0002001 0.0004323 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002915 0.0002985 0.0003063 0.01% Castro::do_advance_ctu() 10 0.0001455 0.0001653 0.0001937 0.01% Castro::clean_state() 62 0.0001471 0.000157 0.0001671 0.00% StateDataPhysBCFunct::() 41 9.966e-05 0.0001247 0.0001587 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001131 0.0001223 0.0001379 0.00% FabArray::ParallelCopy() 41 8.618e-05 9.791e-05 0.0001117 0.00% Castro::do_old_sources() 10 9.333e-05 9.965e-05 0.0001098 0.00% Castro::Castro() 1 5.099e-05 6.915e-05 8.879e-05 0.00% Castro::construct_old_source() 50 5.796e-05 7.021e-05 8.436e-05 0.00% FillPatchSingleLevel 41 6.665e-05 7.195e-05 7.772e-05 0.00% Castro::do_new_sources() 10 5.944e-05 6.428e-05 7.54e-05 0.00% Amr::FinalizeInit() 1 3.718e-06 1.341e-05 7.335e-05 0.00% Castro::advance() 10 4.668e-05 5.247e-05 6.648e-05 0.00% Castro::apply_source_to_state() 20 4.726e-05 5.197e-05 6.191e-05 0.00% Amr::defBaseLevel() 1 3.769e-05 5.062e-05 6.07e-05 0.00% Castro::subcycle_advance_ctu() 10 4.227e-05 4.985e-05 5.853e-05 0.00% Castro::construct_old_gravity() 10 4.04e-05 4.708e-05 5.451e-05 0.00% Castro::construct_new_gravity() 10 3.061e-05 3.56e-05 4.075e-05 0.00% Castro::expand_state() 10 2.487e-05 3.085e-05 3.919e-05 0.00% Castro::check_for_nan() 20 2.491e-05 2.733e-05 3.244e-05 0.00% Castro::computeNewDt() 9 8.998e-06 1.174e-05 2.452e-05 0.00% Castro::post_timestep() 10 1.323e-05 1.65e-05 2.04e-05 0.00% Castro::post_init() 1 1.358e-05 1.532e-05 1.845e-05 0.00% Amr::InitializeInit() 1 2.719e-06 6.681e-06 1.003e-05 0.00% Amr::initialInit() 1 1.648e-06 3.268e-06 7.738e-06 0.00% Castro::computeInitialDt() 2 2.878e-06 4.095e-06 5.006e-06 0.00% Amr::init() 1 1.593e-06 2.136e-06 2.944e-06 0.00% Other 199 0.01054 0.0131 0.01466 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.39 3.39 3.391 100.00% Amr::coarseTimeStep() 10 3.196 3.196 3.196 94.24% Amr::timeStep() 10 3.18 3.18 3.182 93.84% Castro::advance() 10 3.163 3.164 3.164 93.30% Castro::subcycle_advance_ctu() 10 3.083 3.086 3.088 91.06% Castro::do_advance_ctu() 10 3.083 3.085 3.088 91.05% Castro::construct_ctu_hydro_source() 10 2.324 2.326 2.331 68.73% Gravity::make_radial_gravity() 21 0.3153 0.3202 0.3236 9.54% AmrLevel::FillPatch() 41 0.2054 0.2179 0.2268 6.69% Gravity::get_new_grav_vector() 11 0.2103 0.2118 0.2132 6.29% Castro::construct_old_gravity() 10 0.1904 0.1947 0.1998 5.89% Gravity::get_old_grav_vector() 10 0.1893 0.1938 0.1989 5.87% FillPatchIterator::Initialize 41 0.1754 0.1816 0.1915 5.65% Castro::construct_new_gravity() 10 0.1846 0.186 0.1869 5.51% Amr::init() 1 0.1821 0.1829 0.1835 5.41% Castro::initialize_do_advance() 10 0.1721 0.1765 0.1811 5.34% Amr::initialInit() 1 0.1666 0.1675 0.1681 4.96% FillPatchIterator::FillFromLevel0() 41 0.1212 0.1343 0.1457 4.30% FillPatchSingleLevel 41 0.1211 0.1342 0.1456 4.29% Amr::InitializeInit() 1 0.05917 0.09587 0.1374 4.05% Amr::defBaseLevel() 1 0.05917 0.09586 0.1374 4.05% check_for_negative_density() 10 0.0241 0.08112 0.1333 3.93% Castro::clean_state() 62 0.1156 0.1196 0.1263 3.72% Castro::expand_state() 10 0.1147 0.1215 0.126 3.71% Castro::initData() 1 0.04131 0.07837 0.1191 3.51% FabArray::ParallelCopy() 41 0.08878 0.1014 0.1112 3.28% Amr::FinalizeInit() 1 0.02976 0.0716 0.108 3.18% Castro::do_old_sources() 10 0.09317 0.1036 0.1072 3.16% Castro::estTimeStep() 21 0.02991 0.06986 0.1049 3.09% amrex::Copy() 193 0.08074 0.08614 0.09644 2.84% Castro::computeInitialDt() 2 0.002174 0.0441 0.08032 2.37% FabArray::setVal() 143 0.06841 0.07283 0.07768 2.29% Castro::initialize_advance() 10 0.07231 0.07468 0.07684 2.27% FabArray::ParallelCopy_finish() 41 0.04527 0.05788 0.06984 2.06% Castro::computeTemp() 63 0.06405 0.06648 0.06941 2.05% Castro::do_new_sources() 10 0.06303 0.06587 0.06757 1.99% Castro::normalize_species() 62 0.0451 0.04786 0.05389 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04588 0.04786 0.05032 1.48% Castro::reset_internal_energy(Fab) 1008 0.04558 0.04756 0.05003 1.48% FabArray::ParallelCopy_nowait() 41 0.04121 0.04343 0.04641 1.37% StateDataPhysBCFunct::() 41 0.031 0.0327 0.03559 1.05% StateData::FillBoundary(geom) 41 0.0309 0.03257 0.03547 1.05% Castro::construct_new_source() 50 0.02953 0.03065 0.03135 0.92% Gravity::interpolate_monopole_grav() 21 0.02658 0.02683 0.02729 0.80% Castro::post_init() 1 0.02655 0.02681 0.02708 0.80% Castro::construct_new_gravity_source() 10 0.02314 0.02413 0.02473 0.73% Amr::writePlotFile() 2 0.02262 0.02297 0.02321 0.68% Castro::finalize_do_advance() 10 0.01329 0.01536 0.01854 0.55% Castro::post_timestep() 10 0.01563 0.01654 0.01816 0.54% FabArray::setDomainBndry() 41 0.008986 0.01147 0.01462 0.43% Castro::check_for_nan() 20 0.0106 0.01154 0.01452 0.43% MultiFab::contains_nan() 20 0.01058 0.01151 0.01449 0.43% Castro::apply_source_to_state() 20 0.01217 0.013 0.01367 0.40% FabArray::Saxpy() 20 0.01212 0.01295 0.01361 0.40% VisMF::Write(FabArray) 2 0.008941 0.009578 0.01211 0.36% Castro::computeNewDt() 9 0.0117 0.01172 0.01176 0.35% Castro::Castro() 1 0.01022 0.01081 0.0117 0.34% Castro::construct_old_source() 50 0.008757 0.009667 0.01012 0.30% Castro::construct_old_gravity_source() 10 0.008683 0.009597 0.01004 0.30% Castro::initMFs() 1 0.006445 0.006896 0.007876 0.23% Castro::enforce_min_density() 62 0.005859 0.006095 0.006258 0.18% Other 199 0.02062 0.02494 0.02821 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8671 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6746 KiB 6750 KiB 6752 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4542 KiB 4546 KiB 4550 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 228 KiB 242 KiB 251 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2798 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 240 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 45 KiB 50 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-11-gd6ab3a93601a) finalized