Initializing AMReX (25.03-12-g081b96006bd6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-12-g081b96006bd6) initialized Starting run at 05:25:02 UTC on 2025-03-21. Successfully read inputs file ... Castro git describe: 25.03-8-gc82230870 AMReX git describe: 25.03-12-g081b96006 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014647572 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343953273 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325666665 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.309281433 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.308858152 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355827103 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30270415 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293868745 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293863841 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296141926 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295353033 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007446229 seconds Ending run at 05:25:05 UTC on 2025-03-21. Run time = 3.306746264 Run time without initialization = 3.137856689 Average number of zones advanced per microsecond: 0.835 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3051 ... 3.3060 ... 3.3068 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1705 2.2207 2.2576 68.27% Gravity::make_radial_gravity() 21 0.2849 0.2919 0.3069 9.28% check_for_negative_density() 10 0.02474 0.06563 0.118 3.57% Castro::initData() 1 0.03732 0.07256 0.1055 3.19% Castro::estTimeStep() 21 0.02199 0.06108 0.09981 3.02% amrex::Copy() 193 0.06341 0.07942 0.08792 2.66% FabArray::ParallelCopy_finish() 41 0.03535 0.04624 0.08634 2.61% FabArray::setVal() 143 0.0526 0.0656 0.0706 2.13% Castro::normalize_species() 62 0.04462 0.04565 0.0478 1.45% Castro::reset_internal_energy(Fab) 1008 0.04468 0.046 0.04761 1.44% FabArray::ParallelCopy_nowait() 41 0.03557 0.04113 0.04296 1.30% StateData::FillBoundary(geom) 41 0.02927 0.03195 0.03475 1.05% FillPatchIterator::Initialize 41 0.02792 0.0321 0.03422 1.03% Gravity::interpolate_monopole_grav() 21 0.02632 0.02659 0.02696 0.82% Castro::construct_new_gravity_source() 10 0.02312 0.02447 0.02612 0.79% Castro::computeTemp() 63 0.01775 0.01819 0.01876 0.57% Castro::initialize_do_advance() 10 0.01156 0.01629 0.01791 0.54% Castro::initialize_advance() 10 0.005283 0.01076 0.01381 0.42% FabArray::Saxpy() 20 0.01095 0.01258 0.01356 0.41% VisMF::Write(FabArray) 2 0.009179 0.009726 0.01308 0.40% MultiFab::contains_nan() 20 0.01016 0.01116 0.01268 0.38% FabArray::setDomainBndry() 41 0.007255 0.009792 0.01109 0.34% Castro::construct_old_gravity_source() 10 0.007019 0.009691 0.01033 0.31% Amr::writePlotFile() 2 0.007324 0.00963 0.01013 0.31% Castro::initMFs() 1 0.006343 0.006998 0.007831 0.24% Castro::enforce_min_density() 62 0.005721 0.006055 0.006463 0.20% Castro::construct_new_source() 50 0.005686 0.006092 0.006399 0.19% main() 1 0.003586 0.003963 0.004251 0.13% Gravity::get_new_grav_vector() 11 0.002803 0.00349 0.003845 0.12% Amr::coarseTimeStep() 10 0.001269 0.001871 0.002635 0.08% Gravity::get_old_grav_vector() 10 0.001542 0.002024 0.002492 0.08% Castro::finalize_do_advance() 10 0.0004976 0.001088 0.00127 0.04% AmrLevel::FillPatch() 41 0.0007432 0.0009859 0.001259 0.04% Amr::timeStep() 10 0.000136 0.0001749 0.0003308 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000279 0.0002917 0.0003005 0.01% Castro::do_advance_ctu() 10 0.0001483 0.0001646 0.0001857 0.01% Castro::clean_state() 62 0.0001491 0.0001589 0.0001757 0.01% Castro::do_old_sources() 10 7.135e-05 9.363e-05 0.0001082 0.00% StateDataPhysBCFunct::() 41 9.415e-05 0.0001 0.0001068 0.00% FillPatchIterator::FillFromLevel0() 41 9.184e-05 9.813e-05 0.0001024 0.00% FabArray::ParallelCopy() 41 8.058e-05 8.552e-05 9.081e-05 0.00% Castro::construct_old_source() 50 4.3e-05 6.864e-05 8.491e-05 0.00% Castro::Castro() 1 4.317e-05 6.073e-05 7.14e-05 0.00% Amr::FinalizeInit() 1 4.053e-06 1.244e-05 6.653e-05 0.00% Castro::do_new_sources() 10 5.725e-05 6.215e-05 6.608e-05 0.00% FillPatchSingleLevel 41 5.723e-05 6.1e-05 6.409e-05 0.00% Castro::apply_source_to_state() 20 3.692e-05 4.874e-05 6.111e-05 0.00% Castro::advance() 10 3.849e-05 4.817e-05 5.884e-05 0.00% Castro::subcycle_advance_ctu() 10 4.105e-05 4.946e-05 5.732e-05 0.00% Castro::construct_new_gravity() 10 2.87e-05 3.599e-05 4.68e-05 0.00% Castro::construct_old_gravity() 10 3.552e-05 4.081e-05 4.662e-05 0.00% Amr::defBaseLevel() 1 3.81e-05 4.188e-05 4.538e-05 0.00% Castro::expand_state() 10 2.468e-05 2.657e-05 3.018e-05 0.00% Castro::check_for_nan() 20 2.369e-05 2.661e-05 2.817e-05 0.00% Castro::post_init() 1 1.459e-05 1.732e-05 2.108e-05 0.00% Castro::post_timestep() 10 1.461e-05 1.612e-05 1.868e-05 0.00% Castro::computeNewDt() 9 9.523e-06 1.06e-05 1.123e-05 0.00% Amr::initialInit() 1 1.45e-06 2.846e-06 8.539e-06 0.00% Amr::InitializeInit() 1 2.663e-06 3.425e-06 5.909e-06 0.00% Castro::computeInitialDt() 2 3.342e-06 3.892e-06 4.662e-06 0.00% Amr::init() 1 1.583e-06 1.96e-06 2.865e-06 0.00% Other 199 0.009109 0.01281 0.01469 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.305 3.306 3.307 100.00% Amr::coarseTimeStep() 10 3.126 3.126 3.126 94.54% Amr::timeStep() 10 3.114 3.115 3.115 94.21% Castro::advance() 10 3.098 3.098 3.099 93.71% Castro::subcycle_advance_ctu() 10 3.022 3.026 3.043 92.02% Castro::do_advance_ctu() 10 3.022 3.026 3.043 92.01% Castro::construct_ctu_hydro_source() 10 2.304 2.307 2.31 69.86% Gravity::make_radial_gravity() 21 0.302 0.3086 0.3201 9.68% AmrLevel::FillPatch() 41 0.1795 0.1941 0.2113 6.39% Gravity::get_new_grav_vector() 11 0.2046 0.2071 0.2082 6.30% Castro::construct_old_gravity() 10 0.1787 0.1821 0.1937 5.86% Gravity::get_old_grav_vector() 10 0.1779 0.1814 0.1931 5.84% FillPatchIterator::Initialize 41 0.1487 0.1616 0.1868 5.65% Castro::construct_new_gravity() 10 0.1842 0.1851 0.1855 5.61% Amr::init() 1 0.1673 0.168 0.1686 5.10% Castro::initialize_do_advance() 10 0.1553 0.1615 0.1665 5.03% Amr::initialInit() 1 0.1525 0.1536 0.1542 4.66% FillPatchIterator::FillFromLevel0() 41 0.11 0.1198 0.1516 4.58% FillPatchSingleLevel 41 0.1099 0.1197 0.1515 4.58% Amr::InitializeInit() 1 0.05781 0.09348 0.127 3.84% Amr::defBaseLevel() 1 0.0578 0.09348 0.127 3.84% FabArray::ParallelCopy() 41 0.07765 0.08754 0.1221 3.69% Castro::expand_state() 10 0.1015 0.1086 0.1195 3.61% Castro::clean_state() 62 0.1129 0.1155 0.1184 3.58% check_for_negative_density() 10 0.02474 0.06563 0.118 3.57% Castro::initData() 1 0.04078 0.07618 0.1089 3.29% Castro::estTimeStep() 21 0.02199 0.06108 0.09981 3.02% Castro::do_old_sources() 10 0.08941 0.09353 0.09666 2.92% Amr::FinalizeInit() 1 0.0262 0.06007 0.09538 2.88% amrex::Copy() 193 0.06341 0.07942 0.08792 2.66% FabArray::ParallelCopy_finish() 41 0.03535 0.04624 0.08634 2.61% Castro::initialize_advance() 10 0.05168 0.06856 0.07328 2.22% Castro::computeInitialDt() 2 0.002117 0.03605 0.07127 2.16% FabArray::setVal() 143 0.0526 0.0656 0.0706 2.13% Castro::do_new_sources() 10 0.06024 0.06364 0.06856 2.07% Castro::computeTemp() 63 0.06296 0.06448 0.06667 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04497 0.04629 0.04791 1.45% Castro::normalize_species() 62 0.04462 0.04565 0.0478 1.45% Castro::reset_internal_energy(Fab) 1008 0.04468 0.046 0.04761 1.44% FabArray::ParallelCopy_nowait() 41 0.03566 0.04122 0.04304 1.30% StateDataPhysBCFunct::() 41 0.02936 0.03205 0.03485 1.05% StateData::FillBoundary(geom) 41 0.02927 0.03195 0.03475 1.05% Castro::construct_new_source() 50 0.02915 0.03056 0.03245 0.98% Gravity::interpolate_monopole_grav() 21 0.02632 0.02659 0.02696 0.82% Castro::construct_new_gravity_source() 10 0.02312 0.02447 0.02612 0.79% Castro::post_init() 1 0.02104 0.02326 0.0237 0.72% Amr::writePlotFile() 2 0.02188 0.022 0.02235 0.68% Castro::finalize_do_advance() 10 0.01238 0.01743 0.02102 0.64% Castro::post_timestep() 10 0.01543 0.01606 0.01641 0.50% Castro::apply_source_to_state() 20 0.01099 0.01263 0.01363 0.41% FabArray::Saxpy() 20 0.01095 0.01258 0.01356 0.41% VisMF::Write(FabArray) 2 0.009179 0.009726 0.01308 0.40% Castro::check_for_nan() 20 0.01018 0.01118 0.01271 0.38% MultiFab::contains_nan() 20 0.01016 0.01116 0.01268 0.38% Castro::Castro() 1 0.009689 0.01068 0.01158 0.35% FabArray::setDomainBndry() 41 0.007255 0.009792 0.01109 0.34% Castro::construct_old_source() 50 0.007062 0.009759 0.0104 0.31% Castro::construct_old_gravity_source() 10 0.007019 0.009691 0.01033 0.31% Castro::computeNewDt() 9 0.008687 0.008703 0.008713 0.26% Castro::initMFs() 1 0.006343 0.006998 0.007831 0.24% Castro::enforce_min_density() 62 0.005721 0.006055 0.006463 0.20% Other 199 0.01903 0.02446 0.02949 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6770 KiB 6772 KiB 6775 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4565 KiB 4573 KiB 4594 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 221 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 238 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 40 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-12-g081b96006bd6) finalized