Initializing AMReX (25.03-12-g081b96006bd6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-12-g081b96006bd6) initialized Starting run at 05:19:26 UTC on 2025-03-24. Successfully read inputs file ... Castro git describe: 25.03-8-gc82230870 AMReX git describe: 25.03-12-g081b96006 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01475115 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354293196 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.360713471 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.347502628 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.342170096 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.366057659 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307119944 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308413182 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308440913 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307379327 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.315112921 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008510909 seconds Ending run at 05:19:30 UTC on 2025-03-24. Run time = 3.497488871 Run time without initialization = 3.331129109 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.4965 ... 3.4972 ... 3.4975 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2176 2.2414 2.2825 65.26% Gravity::make_radial_gravity() 21 0.3094 0.3159 0.3221 9.21% check_for_negative_density() 10 0.08564 0.1275 0.1492 4.27% Castro::estTimeStep() 21 0.03851 0.06851 0.1094 3.13% Castro::initData() 1 0.03748 0.07154 0.1016 2.90% FabArray::ParallelCopy_finish() 41 0.04776 0.07093 0.0882 2.52% amrex::Copy() 193 0.0802 0.08407 0.08657 2.48% FabArray::setVal() 143 0.0685 0.07364 0.08387 2.40% Castro::normalize_species() 62 0.04603 0.05756 0.0728 2.08% Castro::reset_internal_energy(Fab) 1008 0.04578 0.04842 0.05309 1.52% FabArray::ParallelCopy_nowait() 41 0.04139 0.04296 0.04467 1.28% FillPatchIterator::Initialize 41 0.0284 0.03457 0.03997 1.14% StateData::FillBoundary(geom) 41 0.0316 0.03408 0.03719 1.06% Gravity::interpolate_monopole_grav() 21 0.0268 0.02726 0.02797 0.80% Castro::construct_new_gravity_source() 10 0.02401 0.02538 0.02716 0.78% Castro::initialize_do_advance() 10 0.01608 0.01906 0.02433 0.70% Castro::computeTemp() 63 0.01829 0.0192 0.02008 0.57% MultiFab::contains_nan() 20 0.01125 0.01268 0.01517 0.43% FabArray::Saxpy() 20 0.01247 0.01334 0.01503 0.43% Castro::initialize_advance() 10 0.01008 0.01179 0.01403 0.40% Amr::coarseTimeStep() 10 0.005691 0.00946 0.01263 0.36% Castro::construct_new_source() 50 0.005966 0.007128 0.01223 0.35% VisMF::Write(FabArray) 2 0.009074 0.009611 0.01219 0.35% Amr::writePlotFile() 2 0.007731 0.0105 0.01117 0.32% FabArray::setDomainBndry() 41 0.008343 0.01002 0.01084 0.31% Castro::construct_old_gravity_source() 10 0.008667 0.009796 0.01071 0.31% Castro::initMFs() 1 0.006579 0.006918 0.008775 0.25% Castro::enforce_min_density() 62 0.006006 0.00632 0.006792 0.19% main() 1 0.004067 0.004472 0.004721 0.13% Gravity::get_new_grav_vector() 11 0.003067 0.003277 0.003581 0.10% Gravity::get_old_grav_vector() 10 0.001601 0.002155 0.002706 0.08% Castro::finalize_do_advance() 10 0.001307 0.001372 0.001467 0.04% AmrLevel::FillPatch() 41 0.0008517 0.0009923 0.001129 0.03% Amr::timeStep() 10 0.0001393 0.0002593 0.0008681 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002933 0.0003288 0.0003842 0.01% Castro::computeNewDt() 9 9.786e-06 5.099e-05 0.0003276 0.01% Castro::clean_state() 62 0.0001485 0.0001751 0.0002323 0.01% Castro::subcycle_advance_ctu() 10 4.274e-05 8.1e-05 0.0002263 0.01% Castro::do_advance_ctu() 10 0.0001615 0.0001844 0.0002172 0.01% Castro::check_for_nan() 20 2.504e-05 4.987e-05 0.0001916 0.01% StateDataPhysBCFunct::() 41 0.0001039 0.0001155 0.0001401 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001044 0.0001147 0.0001303 0.00% FabArray::ParallelCopy() 41 8.898e-05 9.768e-05 0.0001163 0.00% Castro::do_new_sources() 10 5.354e-05 7.28e-05 0.000114 0.00% Castro::do_old_sources() 10 8.118e-05 0.0001019 0.000114 0.00% Castro::construct_old_source() 50 5.697e-05 7.916e-05 0.0001013 0.00% Castro::Castro() 1 3.913e-05 8.105e-05 9.207e-05 0.00% Amr::FinalizeInit() 1 3.987e-06 1.434e-05 8.199e-05 0.00% FillPatchSingleLevel 41 6.413e-05 7.124e-05 8.117e-05 0.00% Castro::advance() 10 4.547e-05 5.402e-05 6.917e-05 0.00% Castro::construct_old_gravity() 10 3.675e-05 4.662e-05 6.325e-05 0.00% Castro::apply_source_to_state() 20 4.243e-05 5.168e-05 5.909e-05 0.00% Amr::defBaseLevel() 1 3.489e-05 4.529e-05 5.391e-05 0.00% Castro::construct_new_gravity() 10 3.245e-05 3.664e-05 4.492e-05 0.00% Castro::expand_state() 10 2.281e-05 2.772e-05 3.323e-05 0.00% Castro::post_timestep() 10 1.289e-05 1.977e-05 2.523e-05 0.00% Castro::post_init() 1 1.518e-05 1.756e-05 2e-05 0.00% Amr::initialInit() 1 1.666e-06 2.801e-06 8.103e-06 0.00% Amr::InitializeInit() 1 2.389e-06 3.181e-06 5.656e-06 0.00% Castro::computeInitialDt() 2 2.957e-06 3.654e-06 4.814e-06 0.00% Amr::init() 1 1.461e-06 2.009e-06 2.613e-06 0.00% Other 199 0.01058 0.01323 0.01466 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.496 3.497 3.497 100.00% Amr::coarseTimeStep() 10 3.318 3.318 3.318 94.87% Amr::timeStep() 10 3.295 3.298 3.302 94.40% Castro::advance() 10 3.278 3.279 3.281 93.81% Castro::subcycle_advance_ctu() 10 3.191 3.198 3.205 91.64% Castro::do_advance_ctu() 10 3.19 3.198 3.205 91.64% Castro::construct_ctu_hydro_source() 10 2.388 2.393 2.396 68.51% Gravity::make_radial_gravity() 21 0.3242 0.3322 0.3403 9.73% AmrLevel::FillPatch() 41 0.2121 0.2273 0.2392 6.84% Gravity::get_new_grav_vector() 11 0.2195 0.2238 0.2274 6.50% FillPatchIterator::Initialize 41 0.178 0.1931 0.205 5.86% Castro::construct_new_gravity() 10 0.1964 0.2004 0.2037 5.82% Castro::initialize_do_advance() 10 0.1808 0.1903 0.2027 5.80% Castro::construct_old_gravity() 10 0.1905 0.1959 0.2003 5.73% Gravity::get_old_grav_vector() 10 0.1897 0.1951 0.1994 5.70% FillPatchIterator::FillFromLevel0() 41 0.1276 0.1485 0.1674 4.78% FillPatchSingleLevel 41 0.1275 0.1484 0.1672 4.78% Amr::init() 1 0.1648 0.1659 0.1661 4.75% Amr::initialInit() 1 0.1499 0.151 0.1512 4.32% Castro::clean_state() 62 0.1165 0.1311 0.1496 4.28% check_for_negative_density() 10 0.08564 0.1275 0.1492 4.27% Castro::expand_state() 10 0.1209 0.1323 0.1448 4.14% FabArray::ParallelCopy() 41 0.09118 0.1141 0.1298 3.71% Amr::InitializeInit() 1 0.05936 0.0939 0.1238 3.54% Amr::defBaseLevel() 1 0.05936 0.09389 0.1238 3.54% Castro::estTimeStep() 21 0.03851 0.06851 0.1094 3.13% Castro::do_old_sources() 10 0.09844 0.1036 0.1078 3.08% Castro::initData() 1 0.04152 0.0758 0.1059 3.03% Amr::FinalizeInit() 1 0.02733 0.05708 0.09164 2.62% FabArray::ParallelCopy_finish() 41 0.04776 0.07093 0.0882 2.52% amrex::Copy() 193 0.0802 0.08407 0.08657 2.48% Castro::initialize_advance() 10 0.06943 0.07673 0.08422 2.41% FabArray::setVal() 143 0.0685 0.07364 0.08387 2.40% Castro::do_new_sources() 10 0.06318 0.06936 0.08013 2.29% Castro::computeTemp() 63 0.06454 0.06795 0.07348 2.10% Castro::normalize_species() 62 0.04603 0.05756 0.0728 2.08% Castro::computeInitialDt() 2 0.002213 0.03191 0.06661 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04608 0.04874 0.0534 1.53% Castro::reset_internal_energy(Fab) 1008 0.04578 0.04842 0.05309 1.52% FabArray::ParallelCopy_nowait() 41 0.04149 0.04305 0.04476 1.28% Castro::construct_new_source() 50 0.0303 0.03251 0.03939 1.13% StateDataPhysBCFunct::() 41 0.03171 0.0342 0.03733 1.07% StateData::FillBoundary(geom) 41 0.0316 0.03408 0.03719 1.06% Castro::finalize_do_advance() 10 0.01722 0.02885 0.03503 1.00% Gravity::interpolate_monopole_grav() 21 0.0268 0.02726 0.02797 0.80% Castro::construct_new_gravity_source() 10 0.02401 0.02538 0.02716 0.78% Castro::post_init() 1 0.02352 0.02439 0.02477 0.71% Amr::writePlotFile() 2 0.02341 0.02354 0.02367 0.68% Castro::post_timestep() 10 0.01678 0.01911 0.02159 0.62% Castro::check_for_nan() 20 0.01127 0.01273 0.01536 0.44% MultiFab::contains_nan() 20 0.01125 0.01268 0.01517 0.43% Castro::apply_source_to_state() 20 0.01253 0.01339 0.01509 0.43% FabArray::Saxpy() 20 0.01247 0.01334 0.01503 0.43% VisMF::Write(FabArray) 2 0.009074 0.009611 0.01219 0.35% Castro::Castro() 1 0.01104 0.01132 0.01217 0.35% FabArray::setDomainBndry() 41 0.008343 0.01002 0.01084 0.31% Castro::construct_old_source() 50 0.008724 0.009876 0.01081 0.31% Castro::construct_old_gravity_source() 10 0.008667 0.009796 0.01071 0.31% Castro::computeNewDt() 9 0.009114 0.00918 0.009439 0.27% Castro::initMFs() 1 0.006579 0.006918 0.008775 0.25% Castro::enforce_min_density() 62 0.006006 0.00632 0.006792 0.19% Other 199 0.02077 0.02592 0.0301 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6792 KiB 6796 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4558 KiB 4568 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 228 KiB 249 KiB 264 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2812 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 242 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 52 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-12-g081b96006bd6) finalized