Initializing AMReX (25.03-13-gae582decec9c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-13-gae582decec9c) initialized Starting run at 05:21:24 UTC on 2025-03-25. Successfully read inputs file ... Castro git describe: 25.03-9-gddca91656 AMReX git describe: 25.03-13-gae582dece Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020149869 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.436994345 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.411499076 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.410428193 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.441296896 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.404140241 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.410717707 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.407930381 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.408330595 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.408275423 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.409079402 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.014482673 seconds Ending run at 05:21:28 UTC on 2025-03-25. Run time = 4.356875863 Run time without initialization = 4.170764951 Average number of zones advanced per microsecond: 0.629 Average number of zones advanced per microsecond per rank: 0.079 TinyProfiler total time across processes [min...avg...max]: 4.3546 ... 4.3560 ... 4.3569 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5725 2.8003 2.9482 67.67% check_for_negative_density() 10 0.02591 0.1763 0.4096 9.40% Gravity::make_radial_gravity() 21 0.2997 0.3168 0.3467 7.96% amrex::Copy() 193 0.1106 0.1391 0.1559 3.58% FabArray::setVal() 143 0.1015 0.1111 0.1194 2.74% FabArray::ParallelCopy_finish() 41 0.06615 0.08084 0.1043 2.39% Castro::initData() 1 0.038 0.07174 0.1022 2.35% Castro::estTimeStep() 21 0.02398 0.05757 0.08623 1.98% FabArray::ParallelCopy_nowait() 41 0.06832 0.07404 0.07761 1.78% FillPatchIterator::Initialize 41 0.0553 0.06376 0.06953 1.60% Castro::reset_internal_energy(Fab) 1008 0.0517 0.05689 0.06435 1.48% Castro::normalize_species() 62 0.04783 0.05144 0.05665 1.30% StateData::FillBoundary(geom) 41 0.04195 0.04583 0.05469 1.26% Castro::construct_new_gravity_source() 10 0.03176 0.03598 0.03911 0.90% Castro::initialize_do_advance() 10 0.0266 0.02789 0.02932 0.67% Gravity::interpolate_monopole_grav() 21 0.02716 0.02745 0.02785 0.64% Castro::construct_old_gravity_source() 10 0.01634 0.01854 0.02483 0.57% FabArray::Saxpy() 20 0.02226 0.02325 0.02469 0.57% Castro::computeTemp() 63 0.01989 0.02224 0.02438 0.56% FabArray::setDomainBndry() 41 0.01483 0.02029 0.02398 0.55% Amr::writePlotFile() 2 0.01073 0.01483 0.02006 0.46% Castro::initialize_advance() 10 0.01668 0.01795 0.01877 0.43% VisMF::Write(FabArray) 2 0.0117 0.01452 0.01802 0.41% MultiFab::contains_nan() 20 0.01393 0.01625 0.01791 0.41% Castro::initMFs() 1 0.00929 0.01064 0.01231 0.28% Castro::construct_new_source() 50 0.008023 0.009901 0.01098 0.25% Castro::enforce_min_density() 62 0.007139 0.008387 0.009419 0.22% main() 1 0.005894 0.006896 0.007158 0.16% Gravity::get_new_grav_vector() 11 0.004418 0.00583 0.006672 0.15% Amr::coarseTimeStep() 10 0.0005378 0.002792 0.004675 0.11% Gravity::get_old_grav_vector() 10 0.003179 0.003697 0.004522 0.10% Castro::finalize_do_advance() 10 0.001347 0.00146 0.002037 0.05% AmrLevel::FillPatch() 41 0.0009842 0.001191 0.001321 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0003592 0.0004067 0.0004389 0.01% Amr::timeStep() 10 0.000145 0.0002375 0.0003767 0.01% Castro::clean_state() 62 0.0002265 0.000256 0.0002868 0.01% Castro::do_advance_ctu() 10 0.0001884 0.0002253 0.0002679 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001504 0.0001715 0.000208 0.00% StateDataPhysBCFunct::() 41 0.0001486 0.0001649 0.0001747 0.00% Castro::Castro() 1 9.129e-05 0.0001227 0.0001701 0.00% Castro::do_old_sources() 10 0.0001151 0.00014 0.0001559 0.00% FabArray::ParallelCopy() 41 0.0001214 0.0001409 0.0001551 0.00% Castro::construct_old_source() 50 9.538e-05 0.0001145 0.0001428 0.00% FillPatchSingleLevel 41 8.943e-05 0.0001019 0.0001105 0.00% Castro::do_new_sources() 10 7.23e-05 9.08e-05 0.0001086 0.00% Castro::apply_source_to_state() 20 6.663e-05 7.937e-05 9.614e-05 0.00% Castro::subcycle_advance_ctu() 10 6.73e-05 7.863e-05 9.056e-05 0.00% Amr::FinalizeInit() 1 3.616e-06 1.602e-05 9.026e-05 0.00% Castro::advance() 10 5.643e-05 7.023e-05 8.921e-05 0.00% Castro::construct_old_gravity() 10 4.358e-05 5.224e-05 7.221e-05 0.00% Amr::defBaseLevel() 1 4.85e-05 5.937e-05 7.218e-05 0.00% Castro::expand_state() 10 4.451e-05 5.346e-05 6.311e-05 0.00% Castro::construct_new_gravity() 10 3.286e-05 4.26e-05 5.289e-05 0.00% Castro::check_for_nan() 20 3.254e-05 3.694e-05 4.227e-05 0.00% Castro::post_timestep() 10 1.706e-05 2.548e-05 3.788e-05 0.00% Castro::post_init() 1 1.675e-05 2.01e-05 2.519e-05 0.00% Castro::computeNewDt() 9 1.14e-05 1.35e-05 1.81e-05 0.00% Castro::computeInitialDt() 2 4.23e-06 4.842e-06 5.588e-06 0.00% Amr::InitializeInit() 1 2.776e-06 3.637e-06 5.317e-06 0.00% Amr::init() 1 2.039e-06 2.552e-06 2.84e-06 0.00% Amr::initialInit() 1 1.598e-06 2.381e-06 2.698e-06 0.00% Other 199 0.0147 0.01765 0.01997 0.46% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.355 4.356 4.357 100.00% Amr::coarseTimeStep() 10 4.149 4.149 4.149 95.23% Amr::timeStep() 10 4.135 4.137 4.139 94.99% Castro::advance() 10 4.119 4.119 4.12 94.56% Castro::subcycle_advance_ctu() 10 3.995 4.002 4.012 92.08% Castro::do_advance_ctu() 10 3.995 4.002 4.012 92.08% Castro::construct_ctu_hydro_source() 10 2.995 3.002 3.01 69.08% check_for_negative_density() 10 0.02591 0.1763 0.4096 9.40% Gravity::make_radial_gravity() 21 0.3327 0.3467 0.3709 8.51% AmrLevel::FillPatch() 41 0.3325 0.3442 0.3606 8.28% FillPatchIterator::Initialize 41 0.2775 0.2855 0.2914 6.69% Castro::initialize_do_advance() 10 0.2528 0.2678 0.2772 6.36% Gravity::get_new_grav_vector() 11 0.2431 0.2451 0.2471 5.67% Castro::construct_old_gravity() 10 0.2081 0.2196 0.2378 5.46% Gravity::get_old_grav_vector() 10 0.207 0.2186 0.2367 5.43% Castro::construct_new_gravity() 10 0.2157 0.2173 0.2191 5.03% FillPatchIterator::FillFromLevel0() 41 0.185 0.2014 0.2186 5.02% FillPatchSingleLevel 41 0.1848 0.2012 0.2185 5.01% Castro::expand_state() 10 0.1763 0.19 0.2001 4.59% Amr::init() 1 0.1847 0.1851 0.1858 4.26% FabArray::ParallelCopy() 41 0.142 0.1551 0.1738 3.99% Castro::do_old_sources() 10 0.1611 0.1651 0.1678 3.85% Amr::initialInit() 1 0.1637 0.1647 0.1656 3.80% amrex::Copy() 193 0.1106 0.1391 0.1559 3.58% Castro::clean_state() 62 0.1311 0.1387 0.1491 3.42% Amr::InitializeInit() 1 0.0693 0.1027 0.1325 3.04% Amr::defBaseLevel() 1 0.06929 0.1027 0.1325 3.04% FabArray::setVal() 143 0.1015 0.1111 0.1194 2.74% Castro::initialize_advance() 10 0.1023 0.1119 0.1184 2.72% Castro::initData() 1 0.04264 0.07654 0.1078 2.47% FabArray::ParallelCopy_finish() 41 0.06615 0.08084 0.1043 2.39% Amr::FinalizeInit() 1 0.03186 0.06202 0.09515 2.18% Castro::do_new_sources() 10 0.07963 0.08866 0.0941 2.16% Castro::computeTemp() 63 0.07198 0.07954 0.08809 2.02% Castro::estTimeStep() 21 0.02398 0.05757 0.08623 1.98% FabArray::ParallelCopy_nowait() 41 0.06846 0.07417 0.07772 1.78% Castro::computeInitialDt() 2 0.002217 0.03228 0.06524 1.50% Castro::reset_internal_energy(MultiFab) 63 0.05209 0.05729 0.06477 1.49% Castro::reset_internal_energy(Fab) 1008 0.0517 0.05689 0.06435 1.48% Castro::normalize_species() 62 0.04783 0.05144 0.05665 1.30% StateDataPhysBCFunct::() 41 0.04213 0.04599 0.05486 1.26% StateData::FillBoundary(geom) 41 0.04195 0.04583 0.05469 1.26% Castro::construct_new_source() 50 0.03978 0.04588 0.05006 1.15% Castro::construct_new_gravity_source() 10 0.03176 0.03598 0.03911 0.90% Amr::writePlotFile() 2 0.03474 0.03499 0.03558 0.82% Castro::post_init() 1 0.02871 0.02916 0.02938 0.67% Castro::finalize_do_advance() 10 0.01165 0.01806 0.02934 0.67% Gravity::interpolate_monopole_grav() 21 0.02716 0.02745 0.02785 0.64% Castro::construct_old_source() 50 0.01646 0.01866 0.02497 0.57% Castro::construct_old_gravity_source() 10 0.01634 0.01854 0.02483 0.57% Castro::apply_source_to_state() 20 0.02233 0.02333 0.02478 0.57% FabArray::Saxpy() 20 0.02226 0.02325 0.02469 0.57% FabArray::setDomainBndry() 41 0.01483 0.02029 0.02398 0.55% Castro::Castro() 1 0.01548 0.01754 0.01949 0.45% Castro::post_timestep() 10 0.01559 0.01682 0.01881 0.43% VisMF::Write(FabArray) 2 0.0117 0.01452 0.01802 0.41% Castro::check_for_nan() 20 0.01397 0.01629 0.01795 0.41% MultiFab::contains_nan() 20 0.01393 0.01625 0.01791 0.41% Castro::initMFs() 1 0.00929 0.01064 0.01231 0.28% Castro::enforce_min_density() 62 0.007139 0.008387 0.009419 0.22% Castro::computeNewDt() 9 0.008679 0.008703 0.008721 0.20% Other 199 0.02855 0.03356 0.03762 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 28 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8667 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6825 KiB 6829 KiB 6832 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4582 KiB 4590 KiB 4602 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 286 KiB 299 KiB 314 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 20 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2834 KiB 2836 KiB 2837 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 194 KiB 202 KiB 217 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 50 KiB 54 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 71 KiB 72 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 64 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-13-gae582decec9c) finalized