Initializing AMReX (25.03-14-geae3e36137ad)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-14-geae3e36137ad) initialized Starting run at 05:26:54 UTC on 2025-03-26. Successfully read inputs file ... Castro git describe: 25.03-9-gddca91656 AMReX git describe: 25.03-14-geae3e3613 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015442504 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.369350922 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.348731716 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.350553852 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.38095175 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.341168985 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.336620572 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.332238088 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.329063209 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.32635136 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.329980779 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00919745 seconds Ending run at 05:26:57 UTC on 2025-03-26. Run time = 3.6321555 Run time without initialization = 3.459242715 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.6305 ... 3.6314 ... 3.6325 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3163 2.4017 2.4662 67.89% Gravity::make_radial_gravity() 21 0.3049 0.3141 0.3311 9.11% check_for_negative_density() 10 0.01313 0.08066 0.1711 4.71% Castro::estTimeStep() 21 0.03299 0.06772 0.1054 2.90% Castro::initData() 1 0.03844 0.07305 0.1053 2.90% amrex::Copy() 193 0.08613 0.09603 0.1033 2.84% FabArray::setVal() 143 0.0744 0.07837 0.08353 2.30% FabArray::ParallelCopy_finish() 41 0.05302 0.06155 0.07617 2.10% Castro::normalize_species() 62 0.04686 0.05076 0.05503 1.51% FabArray::ParallelCopy_nowait() 41 0.04492 0.05039 0.05421 1.49% Castro::reset_internal_energy(Fab) 1008 0.04782 0.05001 0.0523 1.44% FillPatchIterator::Initialize 41 0.0314 0.03769 0.04143 1.14% StateData::FillBoundary(geom) 41 0.03178 0.0364 0.03984 1.10% Castro::construct_new_gravity_source() 10 0.02679 0.02772 0.02973 0.82% Gravity::interpolate_monopole_grav() 21 0.0273 0.02776 0.02876 0.79% Castro::computeTemp() 63 0.01919 0.01988 0.02091 0.58% Castro::initialize_do_advance() 10 0.01742 0.01881 0.01974 0.54% FabArray::Saxpy() 20 0.0136 0.01546 0.01727 0.48% FabArray::setDomainBndry() 41 0.009611 0.01285 0.01427 0.39% VisMF::Write(FabArray) 2 0.01004 0.01072 0.014 0.39% MultiFab::contains_nan() 20 0.01175 0.01263 0.01374 0.38% Castro::initialize_advance() 10 0.01133 0.01219 0.01351 0.37% Castro::construct_old_gravity_source() 10 0.009218 0.01109 0.01233 0.34% Amr::writePlotFile() 2 0.00781 0.01076 0.01166 0.32% Castro::initMFs() 1 0.006637 0.007065 0.008042 0.22% Castro::construct_new_source() 50 0.006691 0.007238 0.007809 0.21% Gravity::get_new_grav_vector() 11 0.003529 0.004246 0.004995 0.14% main() 1 0.003652 0.004165 0.004491 0.12% Amr::coarseTimeStep() 10 0.002396 0.003435 0.004334 0.12% Gravity::get_old_grav_vector() 10 0.002024 0.002551 0.003109 0.09% Castro::finalize_do_advance() 10 0.001287 0.001347 0.00141 0.04% AmrLevel::FillPatch() 41 0.001083 0.001252 0.001324 0.04% Amr::timeStep() 10 0.0001711 0.0002513 0.0006006 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0003111 0.0003354 0.000363 0.01% Castro::do_advance_ctu() 10 0.0001682 0.0002079 0.000247 0.01% Castro::clean_state() 62 0.0001775 0.0001965 0.0002221 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001193 0.0001414 0.0001777 0.00% StateDataPhysBCFunct::() 41 0.0001148 0.0001317 0.0001409 0.00% FabArray::ParallelCopy() 41 0.0001063 0.0001195 0.0001341 0.00% Castro::do_old_sources() 10 8.359e-05 0.0001128 0.000125 0.00% FillPatchSingleLevel 41 7.318e-05 8.639e-05 0.000107 0.00% Castro::construct_old_source() 50 6.101e-05 8.454e-05 0.0001045 0.00% Castro::do_new_sources() 10 5.947e-05 8.276e-05 9.502e-05 0.00% Castro::Castro() 1 5.572e-05 7.271e-05 9.387e-05 0.00% Amr::FinalizeInit() 1 4.033e-06 1.613e-05 9.067e-05 0.00% Castro::construct_new_gravity() 10 3.713e-05 4.722e-05 7.176e-05 0.00% Castro::subcycle_advance_ctu() 10 5.137e-05 6.155e-05 6.99e-05 0.00% Castro::advance() 10 5.644e-05 6.384e-05 6.965e-05 0.00% Castro::apply_source_to_state() 20 4.532e-05 5.932e-05 6.946e-05 0.00% Castro::construct_old_gravity() 10 4.363e-05 5.15e-05 6.909e-05 0.00% Amr::defBaseLevel() 1 3.844e-05 4.158e-05 4.673e-05 0.00% Castro::expand_state() 10 3.16e-05 3.502e-05 4.109e-05 0.00% Castro::check_for_nan() 20 2.835e-05 3.437e-05 4.003e-05 0.00% Castro::post_init() 1 1.705e-05 2.031e-05 2.553e-05 0.00% Castro::computeNewDt() 9 1.372e-05 1.796e-05 2.258e-05 0.00% Castro::post_timestep() 10 1.965e-05 2.099e-05 2.253e-05 0.00% Castro::computeInitialDt() 2 3.419e-06 4.59e-06 6.568e-06 0.00% Amr::InitializeInit() 1 2.574e-06 3.401e-06 6.501e-06 0.00% Amr::init() 1 1.684e-06 2.224e-06 3.439e-06 0.00% Amr::initialInit() 1 1.682e-06 2.276e-06 2.84e-06 0.00% Other 261 0.01708 0.0195 0.02172 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.631 3.631 3.632 100.00% Amr::coarseTimeStep() 10 3.446 3.446 3.446 94.86% Amr::timeStep() 10 3.431 3.432 3.433 94.50% Castro::advance() 10 3.414 3.414 3.415 94.01% Castro::subcycle_advance_ctu() 10 3.328 3.33 3.332 91.73% Castro::do_advance_ctu() 10 3.328 3.33 3.332 91.73% Castro::construct_ctu_hydro_source() 10 2.502 2.506 2.511 69.11% Gravity::make_radial_gravity() 21 0.3275 0.3352 0.3511 9.67% AmrLevel::FillPatch() 41 0.2234 0.2398 0.2475 6.81% Gravity::get_new_grav_vector() 11 0.226 0.2279 0.2299 6.33% Castro::construct_old_gravity() 10 0.1977 0.2039 0.2169 5.97% Gravity::get_old_grav_vector() 10 0.1968 0.203 0.2155 5.93% Castro::construct_new_gravity() 10 0.202 0.2033 0.2049 5.64% FillPatchIterator::Initialize 41 0.1926 0.1995 0.2044 5.63% Castro::initialize_do_advance() 10 0.1757 0.1913 0.1965 5.41% Amr::init() 1 0.1716 0.1721 0.1727 4.75% check_for_negative_density() 10 0.01313 0.08066 0.1711 4.71% FillPatchIterator::FillFromLevel0() 41 0.1443 0.1489 0.1614 4.44% FillPatchSingleLevel 41 0.1442 0.1488 0.1612 4.44% Amr::initialInit() 1 0.1559 0.1564 0.1571 4.32% Castro::expand_state() 10 0.1188 0.1328 0.138 3.80% Castro::clean_state() 62 0.1228 0.1268 0.1316 3.62% Amr::InitializeInit() 1 0.05992 0.09462 0.1274 3.51% Amr::defBaseLevel() 1 0.05992 0.09462 0.1274 3.51% FabArray::ParallelCopy() 41 0.1069 0.1122 0.1231 3.39% Castro::do_old_sources() 10 0.1053 0.1093 0.1128 3.10% Castro::initData() 1 0.04264 0.07716 0.109 3.00% Castro::estTimeStep() 21 0.03299 0.06772 0.1054 2.90% amrex::Copy() 193 0.08613 0.09603 0.1033 2.84% Amr::FinalizeInit() 1 0.02874 0.06183 0.09697 2.67% FabArray::setVal() 143 0.0744 0.07837 0.08353 2.30% Castro::initialize_advance() 10 0.07807 0.07987 0.08197 2.26% Castro::do_new_sources() 10 0.07163 0.07481 0.07954 2.19% FabArray::ParallelCopy_finish() 41 0.05302 0.06155 0.07617 2.10% Castro::computeTemp() 63 0.06733 0.07023 0.07357 2.03% Castro::computeInitialDt() 2 0.002629 0.03575 0.07085 1.95% Castro::normalize_species() 62 0.04686 0.05076 0.05503 1.51% FabArray::ParallelCopy_nowait() 41 0.04505 0.0505 0.05432 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04813 0.05035 0.05266 1.45% Castro::reset_internal_energy(Fab) 1008 0.04782 0.05001 0.0523 1.44% StateDataPhysBCFunct::() 41 0.03192 0.03653 0.03998 1.10% StateData::FillBoundary(geom) 41 0.03178 0.0364 0.03984 1.10% Castro::construct_new_source() 50 0.03386 0.03496 0.03651 1.01% Castro::construct_new_gravity_source() 10 0.02679 0.02772 0.02973 0.82% Gravity::interpolate_monopole_grav() 21 0.0273 0.02776 0.02876 0.79% Castro::finalize_do_advance() 10 0.02032 0.02452 0.02794 0.77% Castro::post_init() 1 0.02562 0.02583 0.02593 0.71% Amr::writePlotFile() 2 0.02481 0.02492 0.02502 0.69% Castro::post_timestep() 10 0.0165 0.01729 0.01859 0.51% Castro::apply_source_to_state() 20 0.01366 0.01552 0.01733 0.48% FabArray::Saxpy() 20 0.0136 0.01546 0.01727 0.48% FabArray::setDomainBndry() 41 0.009611 0.01285 0.01427 0.39% VisMF::Write(FabArray) 2 0.01004 0.01072 0.014 0.39% Castro::check_for_nan() 20 0.01179 0.01267 0.01378 0.38% MultiFab::contains_nan() 20 0.01175 0.01263 0.01374 0.38% Castro::construct_old_source() 50 0.00929 0.01117 0.01244 0.34% Castro::construct_old_gravity_source() 10 0.009218 0.01109 0.01233 0.34% Castro::Castro() 1 0.01045 0.01124 0.01209 0.33% Castro::computeNewDt() 9 0.008796 0.008824 0.008847 0.24% Castro::initMFs() 1 0.006637 0.007065 0.008042 0.22% Other 261 0.02804 0.03144 0.03535 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8673 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6788 KiB 6795 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4573 KiB 4581 KiB 4584 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 227 KiB 247 KiB 255 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2816 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 234 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 47 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-14-geae3e36137ad) finalized