Initializing AMReX (25.03-15-g546cc5e16431)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431) initialized Starting run at 05:20:36 UTC on 2025-03-27. Successfully read inputs file ... Castro git describe: 25.03-9-gddca91656 AMReX git describe: 25.03-15-g546cc5e16 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.022544747 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.423533049 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.380711606 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.375881977 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.394732664 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372964859 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.372518583 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.373074521 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.373667158 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.372395444 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.378558556 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012693998 seconds Ending run at 05:20:40 UTC on 2025-03-27. Run time = 4.029593592 Run time without initialization = 3.838636737 Average number of zones advanced per microsecond: 0.683 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.0285 ... 4.0290 ... 4.0296 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3021 2.5261 2.7325 67.81% check_for_negative_density() 10 0.01013 0.2209 0.4516 11.21% Gravity::make_radial_gravity() 21 0.295 0.314 0.3337 8.28% amrex::Copy() 193 0.09964 0.1186 0.1328 3.29% FabArray::setVal() 143 0.09766 0.1035 0.1097 2.72% Castro::initData() 1 0.03795 0.07208 0.1038 2.58% Castro::estTimeStep() 21 0.02285 0.0591 0.09561 2.37% FabArray::ParallelCopy_finish() 41 0.0559 0.0641 0.07555 1.87% FabArray::ParallelCopy_nowait() 41 0.05818 0.0639 0.06964 1.73% FillPatchIterator::Initialize 41 0.05111 0.0569 0.06287 1.56% Castro::reset_internal_energy(Fab) 1008 0.04873 0.05193 0.05473 1.36% Castro::normalize_species() 62 0.04759 0.0489 0.05025 1.25% StateData::FillBoundary(geom) 41 0.03751 0.04081 0.04729 1.17% Castro::construct_new_gravity_source() 10 0.0293 0.03259 0.03586 0.89% Castro::initialize_do_advance() 10 0.02417 0.02672 0.03147 0.78% Gravity::interpolate_monopole_grav() 21 0.02669 0.02712 0.02743 0.68% Castro::computeTemp() 63 0.01901 0.02031 0.02166 0.54% FabArray::Saxpy() 20 0.01797 0.01951 0.02097 0.52% FabArray::setDomainBndry() 41 0.01652 0.01867 0.02078 0.52% VisMF::Write(FabArray) 2 0.01332 0.01524 0.01905 0.47% Castro::initialize_advance() 10 0.01595 0.01644 0.01698 0.42% Amr::writePlotFile() 2 0.0108 0.01464 0.01667 0.41% Castro::construct_old_gravity_source() 10 0.01437 0.01547 0.01599 0.40% MultiFab::contains_nan() 20 0.01248 0.01422 0.01562 0.39% Castro::initMFs() 1 0.00924 0.01013 0.01439 0.36% StateData::define() 4 0.008123 0.008462 0.009088 0.23% Castro::construct_new_source() 50 0.007071 0.00813 0.008894 0.22% main() 1 0.007061 0.007236 0.007395 0.18% Gravity::get_new_grav_vector() 11 0.004422 0.005528 0.006699 0.17% Amr::coarseTimeStep() 10 0.001284 0.002593 0.003507 0.09% Gravity::get_old_grav_vector() 10 0.002714 0.002989 0.003287 0.08% Castro::finalize_do_advance() 10 0.001342 0.001395 0.001508 0.04% AmrLevel::FillPatch() 41 0.00109 0.001232 0.001351 0.03% Amr::timeStep() 10 0.0001427 0.000223 0.0005067 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003224 0.000355 0.0003779 0.01% Castro::do_advance_ctu() 10 0.0001877 0.0002324 0.0002873 0.01% Castro::clean_state() 62 0.0001986 0.000224 0.0002501 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001446 0.0001594 0.0001952 0.00% StateDataPhysBCFunct::() 41 0.0001296 0.0001508 0.0001759 0.00% Castro::do_old_sources() 10 0.0001261 0.0001449 0.0001639 0.00% Castro::Castro() 1 6.134e-05 0.0001233 0.0001587 0.00% FabArray::ParallelCopy() 41 0.0001228 0.0001416 0.0001483 0.00% Castro::construct_old_source() 50 9.317e-05 0.0001031 0.0001225 0.00% FillPatchSingleLevel 41 8.596e-05 9.757e-05 0.0001082 0.00% Castro::apply_source_to_state() 20 5.786e-05 7.33e-05 9.84e-05 0.00% Castro::subcycle_advance_ctu() 10 5.47e-05 7.509e-05 9.657e-05 0.00% Castro::do_new_sources() 10 7.11e-05 7.722e-05 9.106e-05 0.00% Castro::advance() 10 5.93e-05 7.041e-05 8.765e-05 0.00% Amr::FinalizeInit() 1 4.367e-06 1.493e-05 7.724e-05 0.00% Castro::construct_old_gravity() 10 4.766e-05 5.723e-05 7.326e-05 0.00% Castro::expand_state() 10 3.498e-05 5.11e-05 6.444e-05 0.00% Amr::defBaseLevel() 1 4.25e-05 4.952e-05 6.01e-05 0.00% Castro::construct_new_gravity() 10 3.25e-05 4.382e-05 5.633e-05 0.00% Castro::check_for_nan() 20 2.726e-05 3.513e-05 4.284e-05 0.00% Castro::post_timestep() 10 1.538e-05 2.034e-05 2.564e-05 0.00% Castro::post_init() 1 1.499e-05 1.836e-05 2.247e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.017e-06 1.327e-05 1.616e-05 0.00% Amr::InitializeInit() 1 2.5e-06 3.508e-06 6.446e-06 0.00% Castro::computeInitialDt() 2 4.184e-06 5.023e-06 5.854e-06 0.00% Amr::init() 1 1.861e-06 2.552e-06 3.482e-06 0.00% Amr::initialInit() 1 1.588e-06 2.191e-06 3.002e-06 0.00% Other 265 0.01378 0.01697 0.01886 0.47% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.028 4.029 4.03 100.00% Amr::coarseTimeStep() 10 3.819 3.819 3.819 94.76% Amr::timeStep() 10 3.805 3.806 3.808 94.49% Castro::advance() 10 3.789 3.79 3.79 94.06% Castro::subcycle_advance_ctu() 10 3.679 3.682 3.685 91.44% Castro::do_advance_ctu() 10 3.679 3.682 3.685 91.44% Castro::construct_ctu_hydro_source() 10 2.765 2.77 2.775 68.88% check_for_negative_density() 10 0.01013 0.2209 0.4516 11.21% Gravity::make_radial_gravity() 21 0.3194 0.3386 0.3574 8.87% AmrLevel::FillPatch() 41 0.2773 0.2941 0.3129 7.76% FillPatchIterator::Initialize 41 0.2354 0.2451 0.2558 6.35% Castro::initialize_do_advance() 10 0.2228 0.2371 0.2513 6.24% Gravity::get_new_grav_vector() 11 0.2339 0.2348 0.2358 5.85% Castro::construct_old_gravity() 10 0.1945 0.2091 0.2235 5.55% Gravity::get_old_grav_vector() 10 0.1936 0.2082 0.2227 5.53% Castro::construct_new_gravity() 10 0.2045 0.2057 0.207 5.14% Amr::init() 1 0.1897 0.1901 0.1908 4.74% Castro::expand_state() 10 0.1508 0.1649 0.1813 4.50% FillPatchIterator::FillFromLevel0() 41 0.1645 0.1695 0.1745 4.33% FillPatchSingleLevel 41 0.1644 0.1693 0.1744 4.33% Amr::initialInit() 1 0.1667 0.1673 0.1681 4.17% Castro::do_old_sources() 10 0.1388 0.1404 0.1416 3.51% Amr::InitializeInit() 1 0.06753 0.1028 0.1347 3.34% Amr::defBaseLevel() 1 0.06753 0.1028 0.1347 3.34% FabArray::ParallelCopy() 41 0.1239 0.1283 0.134 3.33% amrex::Copy() 193 0.09964 0.1186 0.1328 3.29% Castro::clean_state() 62 0.1241 0.1282 0.1317 3.27% FabArray::setVal() 143 0.09766 0.1035 0.1097 2.72% Castro::initData() 1 0.04292 0.07676 0.1089 2.70% Castro::initialize_advance() 10 0.09994 0.1027 0.1057 2.62% Amr::FinalizeInit() 1 0.03314 0.06449 0.09948 2.47% Castro::estTimeStep() 21 0.02285 0.0591 0.09561 2.37% Castro::do_new_sources() 10 0.07388 0.08001 0.08517 2.11% Castro::computeTemp() 63 0.0681 0.0726 0.07671 1.90% FabArray::ParallelCopy_finish() 41 0.0559 0.0641 0.07555 1.87% FabArray::ParallelCopy_nowait() 41 0.0583 0.06403 0.06977 1.73% Castro::computeInitialDt() 2 0.002317 0.03367 0.06859 1.70% Castro::reset_internal_energy(MultiFab) 63 0.04908 0.05229 0.05511 1.37% Castro::reset_internal_energy(Fab) 1008 0.04873 0.05193 0.05473 1.36% Castro::normalize_species() 62 0.04759 0.0489 0.05025 1.25% StateDataPhysBCFunct::() 41 0.03766 0.04096 0.04746 1.18% StateData::FillBoundary(geom) 41 0.03751 0.04081 0.04729 1.17% Castro::construct_new_source() 50 0.03638 0.04072 0.04472 1.11% Castro::construct_new_gravity_source() 10 0.0293 0.03259 0.03586 0.89% Amr::writePlotFile() 2 0.0355 0.0356 0.03578 0.89% Castro::post_init() 1 0.03005 0.03028 0.03041 0.75% Gravity::interpolate_monopole_grav() 21 0.02669 0.02712 0.02743 0.68% Castro::finalize_do_advance() 10 0.01197 0.0183 0.02553 0.63% Castro::apply_source_to_state() 20 0.01803 0.01958 0.02107 0.52% FabArray::Saxpy() 20 0.01797 0.01951 0.02097 0.52% FabArray::setDomainBndry() 41 0.01652 0.01867 0.02078 0.52% Castro::Castro() 1 0.01626 0.01708 0.01906 0.47% VisMF::Write(FabArray) 2 0.01332 0.01524 0.01905 0.47% Castro::post_timestep() 10 0.01589 0.01645 0.01795 0.45% Castro::construct_old_source() 50 0.01447 0.01557 0.01611 0.40% Castro::construct_old_gravity_source() 10 0.01437 0.01547 0.01599 0.40% Castro::check_for_nan() 20 0.01251 0.01425 0.01566 0.39% MultiFab::contains_nan() 20 0.01248 0.01422 0.01562 0.39% Castro::initMFs() 1 0.00924 0.01013 0.01439 0.36% AmrLevel::AmrLevel(dm) 1 0.008136 0.008475 0.009102 0.23% StateData::define() 4 0.008123 0.008462 0.009088 0.23% Other 265 0.02808 0.03249 0.03565 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8662 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6789 KiB 6793 KiB 6795 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4563 KiB 4566 KiB 4569 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 259 KiB 277 KiB 298 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 21 KiB 23 KiB 27 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2819 KiB 2821 KiB 2822 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 202 KiB 214 KiB 226 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 48 KiB 48 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 74 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 66 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431) finalized