Initializing AMReX (25.03-15-g546cc5e16431)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431) initialized Starting run at 05:19:01 UTC on 2025-03-28. Successfully read inputs file ... Castro git describe: 25.03-9-gddca91656 AMReX git describe: 25.03-15-g546cc5e16 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014705592 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354931443 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341901429 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.337688275 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317960321 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.376700341 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302208845 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296385932 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297963816 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297595991 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297492738 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007539917 seconds Ending run at 05:19:04 UTC on 2025-03-28. Run time = 3.39952513 Run time without initialization = 3.232928375 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.3982 ... 3.3991 ... 3.3998 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1386 2.2116 2.2469 66.09% Gravity::make_radial_gravity() 21 0.284 0.3006 0.3141 9.24% check_for_negative_density() 10 0.08365 0.121 0.1966 5.78% Castro::initData() 1 0.03913 0.07235 0.1019 3.00% amrex::Copy() 193 0.07801 0.08578 0.09695 2.85% Castro::estTimeStep() 21 0.02408 0.05692 0.0906 2.66% FabArray::setVal() 143 0.06859 0.07312 0.0814 2.39% FabArray::ParallelCopy_finish() 41 0.04856 0.061 0.07366 2.17% Castro::normalize_species() 62 0.04594 0.04866 0.05281 1.55% Castro::reset_internal_energy(Fab) 1008 0.04497 0.04636 0.04871 1.43% FabArray::ParallelCopy_nowait() 41 0.03858 0.0422 0.04375 1.29% FillPatchIterator::Initialize 41 0.02887 0.03425 0.0393 1.16% StateData::FillBoundary(geom) 41 0.02994 0.03292 0.0357 1.05% Gravity::interpolate_monopole_grav() 21 0.02651 0.02696 0.02797 0.82% Castro::construct_new_gravity_source() 10 0.02352 0.02447 0.02549 0.75% Castro::initialize_do_advance() 10 0.01658 0.01779 0.0202 0.59% Castro::computeTemp() 63 0.01827 0.01853 0.01873 0.55% Castro::initialize_advance() 10 0.01087 0.01258 0.01425 0.42% MultiFab::contains_nan() 20 0.01068 0.01202 0.01413 0.42% FabArray::Saxpy() 20 0.0118 0.01261 0.0136 0.40% VisMF::Write(FabArray) 2 0.009298 0.009717 0.01207 0.36% FabArray::setDomainBndry() 41 0.00786 0.01028 0.01158 0.34% Castro::construct_old_gravity_source() 10 0.008945 0.009679 0.01024 0.30% Amr::writePlotFile() 2 0.007313 0.009741 0.01023 0.30% Castro::initMFs() 1 0.006559 0.00714 0.008151 0.24% Castro::construct_new_source() 50 0.006271 0.006486 0.006661 0.20% main() 1 0.003569 0.003871 0.004083 0.12% Gravity::get_new_grav_vector() 11 0.003248 0.003516 0.004032 0.12% Gravity::get_old_grav_vector() 10 0.001602 0.002116 0.002505 0.07% Amr::coarseTimeStep() 10 0.001158 0.001826 0.002291 0.07% Castro::finalize_do_advance() 10 0.001244 0.00127 0.001306 0.04% AmrLevel::FillPatch() 41 0.0008513 0.0009403 0.001035 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0002731 0.0002984 0.0003407 0.01% Amr::timeStep() 10 0.0001371 0.000178 0.0003396 0.01% Castro::do_advance_ctu() 10 0.0001483 0.0001717 0.0002039 0.01% Castro::clean_state() 62 0.0001448 0.0001601 0.0001812 0.01% StateDataPhysBCFunct::() 41 0.000104 0.0001237 0.0001574 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001027 0.0001146 0.0001337 0.00% Castro::do_old_sources() 10 8.023e-05 9.903e-05 0.0001192 0.00% Castro::subcycle_advance_ctu() 10 4.94e-05 5.867e-05 0.0001075 0.00% FabArray::ParallelCopy() 41 9.044e-05 9.787e-05 0.0001072 0.00% Amr::FinalizeInit() 1 4.101e-06 1.727e-05 0.0001058 0.00% Castro::construct_old_source() 50 5.394e-05 6.75e-05 8.515e-05 0.00% FillPatchSingleLevel 41 6.253e-05 7.112e-05 8.015e-05 0.00% Castro::Castro() 1 5.042e-05 5.979e-05 7.961e-05 0.00% Castro::do_new_sources() 10 5.756e-05 6.522e-05 7.899e-05 0.00% Castro::advance() 10 4.424e-05 5.434e-05 6.672e-05 0.00% Castro::apply_source_to_state() 20 4.165e-05 4.901e-05 6.166e-05 0.00% Castro::construct_new_gravity() 10 3.149e-05 3.625e-05 5.487e-05 0.00% Amr::defBaseLevel() 1 4.022e-05 4.598e-05 5.047e-05 0.00% Castro::construct_old_gravity() 10 3.542e-05 4.327e-05 5.023e-05 0.00% Castro::check_for_nan() 20 2.409e-05 3.005e-05 3.769e-05 0.00% Castro::expand_state() 10 2.592e-05 3.059e-05 3.696e-05 0.00% Castro::post_init() 1 1.427e-05 1.815e-05 2.458e-05 0.00% Castro::post_timestep() 10 1.301e-05 1.586e-05 1.981e-05 0.00% Amr::initialInit() 1 1.624e-06 4.286e-06 1.96e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.004e-05 1.153e-05 1.656e-05 0.00% Castro::computeNewDt() 9 9.005e-06 1.02e-05 1.241e-05 0.00% Amr::InitializeInit() 1 2.489e-06 3.347e-06 6.125e-06 0.00% Amr::init() 1 1.894e-06 2.531e-06 4.891e-06 0.00% Castro::computeInitialDt() 2 2.966e-06 3.674e-06 4.212e-06 0.00% Other 260 0.01605 0.01888 0.02102 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.398 3.399 3.4 100.00% Amr::coarseTimeStep() 10 3.221 3.221 3.221 94.75% Amr::timeStep() 10 3.209 3.21 3.211 94.43% Castro::advance() 10 3.193 3.193 3.193 93.93% Castro::subcycle_advance_ctu() 10 3.108 3.115 3.118 91.73% Castro::do_advance_ctu() 10 3.107 3.115 3.118 91.72% Castro::construct_ctu_hydro_source() 10 2.352 2.354 2.357 69.33% Gravity::make_radial_gravity() 21 0.3018 0.3178 0.3302 9.71% AmrLevel::FillPatch() 41 0.1959 0.2171 0.2299 6.76% Gravity::get_new_grav_vector() 11 0.2058 0.2069 0.2083 6.13% Castro::construct_old_gravity() 10 0.1807 0.1958 0.2076 6.11% Gravity::get_old_grav_vector() 10 0.1796 0.1949 0.2069 6.08% Castro::initialize_do_advance() 10 0.1668 0.1816 0.1972 5.80% check_for_negative_density() 10 0.08365 0.121 0.1966 5.78% FillPatchIterator::Initialize 41 0.1653 0.1812 0.187 5.50% Castro::construct_new_gravity() 10 0.1825 0.1838 0.1851 5.44% Amr::init() 1 0.1654 0.166 0.1666 4.90% Amr::initialInit() 1 0.1505 0.1511 0.1517 4.46% FillPatchIterator::FillFromLevel0() 41 0.1253 0.1366 0.1427 4.20% FillPatchSingleLevel 41 0.1252 0.1365 0.1426 4.19% Castro::expand_state() 10 0.1084 0.126 0.1407 4.14% Castro::clean_state() 62 0.1163 0.1191 0.1238 3.64% Amr::InitializeInit() 1 0.06014 0.09367 0.1235 3.63% Amr::defBaseLevel() 1 0.06013 0.09367 0.1235 3.63% FabArray::ParallelCopy() 41 0.09176 0.1034 0.1125 3.31% Castro::initData() 1 0.04303 0.07624 0.1056 3.10% Castro::do_old_sources() 10 0.09614 0.09944 0.1019 3.00% amrex::Copy() 193 0.07801 0.08578 0.09695 2.85% Amr::FinalizeInit() 1 0.02696 0.05744 0.09134 2.69% Castro::estTimeStep() 21 0.02408 0.05692 0.0906 2.66% Castro::initialize_advance() 10 0.07133 0.0752 0.08219 2.42% FabArray::setVal() 143 0.06859 0.07312 0.0814 2.39% FabArray::ParallelCopy_finish() 41 0.04856 0.061 0.07366 2.17% Castro::do_new_sources() 10 0.06323 0.06601 0.06875 2.02% Castro::computeTemp() 63 0.06366 0.06518 0.06779 1.99% Castro::computeInitialDt() 2 0.002187 0.03269 0.06655 1.96% Castro::normalize_species() 62 0.04594 0.04866 0.05281 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04524 0.04666 0.04905 1.44% Castro::reset_internal_energy(Fab) 1008 0.04497 0.04636 0.04871 1.43% FabArray::ParallelCopy_nowait() 41 0.0387 0.0423 0.04384 1.29% StateDataPhysBCFunct::() 41 0.03006 0.03304 0.03585 1.05% StateData::FillBoundary(geom) 41 0.02994 0.03292 0.0357 1.05% Castro::construct_new_source() 50 0.02995 0.03096 0.03208 0.94% Gravity::interpolate_monopole_grav() 21 0.02651 0.02696 0.02797 0.82% Castro::construct_new_gravity_source() 10 0.02352 0.02447 0.02549 0.75% Castro::post_init() 1 0.02403 0.02417 0.0243 0.71% Amr::writePlotFile() 2 0.02247 0.02252 0.02259 0.66% Castro::finalize_do_advance() 10 0.01435 0.01694 0.02104 0.62% Castro::post_timestep() 10 0.01609 0.01644 0.01719 0.51% Castro::check_for_nan() 20 0.01071 0.01205 0.01417 0.42% MultiFab::contains_nan() 20 0.01068 0.01202 0.01413 0.42% Castro::apply_source_to_state() 20 0.01184 0.01266 0.01366 0.40% FabArray::Saxpy() 20 0.0118 0.01261 0.0136 0.40% VisMF::Write(FabArray) 2 0.009298 0.009717 0.01207 0.36% Castro::Castro() 1 0.01031 0.01094 0.01173 0.34% FabArray::setDomainBndry() 41 0.00786 0.01028 0.01158 0.34% Castro::construct_old_source() 50 0.008999 0.009746 0.01033 0.30% Castro::construct_old_gravity_source() 10 0.008945 0.009679 0.01024 0.30% Castro::computeNewDt() 9 0.008551 0.008567 0.008578 0.25% Castro::initMFs() 1 0.006559 0.00714 0.008151 0.24% AmrLevel::AmrLevel(dm) 1 0.005389 0.005781 0.00641 0.19% Other 260 0.02085 0.02461 0.0276 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6779 KiB 6786 KiB 6789 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4577 KiB 4581 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 244 KiB 265 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2814 KiB 2817 KiB 2818 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 238 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 48 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 73 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431) finalized