Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:24:18 UTC on 2025-04-01. Successfully read inputs file ... Castro git describe: 25.03-9-gddca91656 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.03-3-g293030a0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014801929 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346428446 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346815122 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.32314207 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.321073775 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372522319 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305684215 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297066197 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298252701 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297149839 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29859189 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007433338 seconds Ending run at 05:24:21 UTC on 2025-04-01. Run time = 3.388360946 Run time without initialization = 3.219033051 Average number of zones advanced per microsecond: 0.814 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3868 ... 3.3878 ... 3.3884 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1840 2.2256 2.2842 67.41% Gravity::make_radial_gravity() 21 0.2945 0.3028 0.3113 9.19% check_for_negative_density() 10 0.02914 0.09077 0.1336 3.94% Castro::initData() 1 0.03814 0.07146 0.1044 3.08% amrex::Copy() 193 0.08015 0.0875 0.09946 2.94% Castro::estTimeStep() 21 0.02452 0.06104 0.09728 2.87% FabArray::setVal() 143 0.0693 0.07377 0.07957 2.35% FabArray::ParallelCopy_finish() 41 0.03586 0.05528 0.06805 2.01% Castro::normalize_species() 62 0.04504 0.04878 0.05237 1.55% Castro::reset_internal_energy(Fab) 1008 0.04539 0.04754 0.04891 1.44% FabArray::ParallelCopy_nowait() 41 0.03979 0.04261 0.04482 1.32% FillPatchIterator::Initialize 41 0.02943 0.03508 0.03807 1.12% StateData::FillBoundary(geom) 41 0.02984 0.0327 0.03592 1.06% Gravity::interpolate_monopole_grav() 21 0.02652 0.02757 0.02929 0.86% Castro::construct_new_gravity_source() 10 0.02328 0.0246 0.02598 0.77% Castro::initialize_do_advance() 10 0.01653 0.01815 0.01955 0.58% Castro::computeTemp() 63 0.01799 0.01851 0.01901 0.56% Castro::initialize_advance() 10 0.01035 0.01256 0.01459 0.43% FabArray::Saxpy() 20 0.01107 0.01256 0.01333 0.39% MultiFab::contains_nan() 20 0.01075 0.01167 0.013 0.38% VisMF::Write(FabArray) 2 0.009207 0.009646 0.01193 0.35% FabArray::setDomainBndry() 41 0.008388 0.01052 0.01155 0.34% Amr::writePlotFile() 2 0.007465 0.009636 0.0101 0.30% Castro::construct_old_gravity_source() 10 0.009036 0.009496 0.009924 0.29% Castro::initMFs() 1 0.006341 0.006705 0.008622 0.25% Castro::construct_new_source() 50 0.006217 0.006361 0.006601 0.19% Castro::enforce_min_density() 62 0.005686 0.00613 0.0065 0.19% main() 1 0.003299 0.003773 0.004116 0.12% Gravity::get_new_grav_vector() 11 0.003243 0.00362 0.004027 0.12% Gravity::get_old_grav_vector() 10 0.001672 0.002279 0.003088 0.09% Amr::coarseTimeStep() 10 0.0009422 0.001975 0.002879 0.08% Castro::finalize_do_advance() 10 0.001247 0.001281 0.001306 0.04% AmrLevel::FillPatch() 41 0.0008723 0.0009844 0.001055 0.03% Amr::timeStep() 10 0.0001397 0.0001976 0.0004642 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002893 0.0003012 0.0003208 0.01% Castro::do_advance_ctu() 10 0.0001561 0.0001754 0.0001934 0.01% Castro::clean_state() 62 0.0001539 0.0001642 0.0001769 0.01% StateDataPhysBCFunct::() 41 0.0001048 0.0001178 0.0001364 0.00% FillPatchIterator::FillFromLevel0() 41 9.435e-05 0.0001074 0.0001231 0.00% Castro::do_old_sources() 10 8.136e-05 9.516e-05 0.000104 0.00% FabArray::ParallelCopy() 41 8.687e-05 9.441e-05 0.0001038 0.00% Castro::Castro() 1 4.331e-05 7.446e-05 9.441e-05 0.00% Amr::FinalizeInit() 1 4.217e-06 1.611e-05 9.357e-05 0.00% Castro::construct_old_source() 50 5.417e-05 6.938e-05 8.116e-05 0.00% FillPatchSingleLevel 41 5.863e-05 6.863e-05 7.461e-05 0.00% Castro::do_new_sources() 10 5.226e-05 6.153e-05 6.96e-05 0.00% Castro::construct_old_gravity() 10 3.412e-05 4.426e-05 6.761e-05 0.00% Castro::advance() 10 4.069e-05 5.262e-05 6.6e-05 0.00% Castro::subcycle_advance_ctu() 10 4.769e-05 5.389e-05 6.259e-05 0.00% Castro::apply_source_to_state() 20 4.595e-05 4.879e-05 5.437e-05 0.00% Amr::defBaseLevel() 1 3.617e-05 4.106e-05 4.773e-05 0.00% Castro::expand_state() 10 2.126e-05 2.997e-05 4.126e-05 0.00% Castro::construct_new_gravity() 10 3.107e-05 3.41e-05 3.847e-05 0.00% Castro::check_for_nan() 20 2.617e-05 2.98e-05 3.568e-05 0.00% Castro::post_init() 1 1.468e-05 1.709e-05 2.214e-05 0.00% Castro::post_timestep() 10 1.372e-05 1.573e-05 2.139e-05 0.00% Castro::computeNewDt() 9 9.079e-06 9.8e-06 1.151e-05 0.00% Castro::computeInitialDt() 2 3.337e-06 4.283e-06 8.125e-06 0.00% Amr::InitializeInit() 1 2.498e-06 3.767e-06 5.994e-06 0.00% Amr::initialInit() 1 1.69e-06 2.22e-06 2.92e-06 0.00% Amr::init() 1 1.675e-06 1.962e-06 2.456e-06 0.00% Other 199 0.01041 0.01291 0.0146 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.387 3.388 3.388 100.00% Amr::coarseTimeStep() 10 3.208 3.208 3.208 94.66% Amr::timeStep() 10 3.195 3.196 3.197 94.34% Castro::advance() 10 3.178 3.179 3.179 93.82% Castro::subcycle_advance_ctu() 10 3.097 3.099 3.101 91.53% Castro::do_advance_ctu() 10 3.097 3.099 3.101 91.53% Castro::construct_ctu_hydro_source() 10 2.336 2.338 2.342 69.13% Gravity::make_radial_gravity() 21 0.3107 0.3197 0.3278 9.67% AmrLevel::FillPatch() 41 0.1985 0.2116 0.2322 6.85% Gravity::get_new_grav_vector() 11 0.2099 0.2111 0.2128 6.28% Castro::construct_old_gravity() 10 0.19 0.1973 0.2035 6.01% Gravity::get_old_grav_vector() 10 0.1892 0.1966 0.2027 5.98% FillPatchIterator::Initialize 41 0.1641 0.1767 0.1945 5.74% Castro::construct_new_gravity() 10 0.187 0.188 0.189 5.58% Castro::initialize_do_advance() 10 0.1608 0.1683 0.1782 5.26% Amr::init() 1 0.1677 0.1687 0.169 4.99% Amr::initialInit() 1 0.153 0.154 0.1544 4.56% FillPatchIterator::FillFromLevel0() 41 0.1149 0.1311 0.1466 4.33% FillPatchSingleLevel 41 0.1148 0.131 0.1464 4.32% check_for_negative_density() 10 0.02914 0.09077 0.1336 3.94% Amr::InitializeInit() 1 0.0596 0.09304 0.1259 3.71% Amr::defBaseLevel() 1 0.0596 0.09304 0.1259 3.71% Castro::clean_state() 62 0.1159 0.1205 0.1248 3.68% Castro::expand_state() 10 0.1058 0.112 0.1222 3.61% Castro::do_old_sources() 10 0.09746 0.1044 0.1115 3.29% FabArray::ParallelCopy() 41 0.08087 0.09809 0.1108 3.27% Castro::initData() 1 0.04221 0.07545 0.1078 3.18% amrex::Copy() 193 0.08015 0.0875 0.09946 2.94% Castro::estTimeStep() 21 0.02452 0.06104 0.09728 2.87% Amr::FinalizeInit() 1 0.02717 0.06096 0.09453 2.79% FabArray::setVal() 143 0.0693 0.07377 0.07957 2.35% Castro::initialize_advance() 10 0.07387 0.07593 0.07828 2.31% Castro::computeInitialDt() 2 0.002176 0.03601 0.06958 2.05% Castro::do_new_sources() 10 0.06267 0.0658 0.06924 2.04% FabArray::ParallelCopy_finish() 41 0.03586 0.05528 0.06805 2.01% Castro::computeTemp() 63 0.06368 0.06635 0.06751 1.99% Castro::normalize_species() 62 0.04504 0.04878 0.05237 1.55% Castro::reset_internal_energy(MultiFab) 63 0.0457 0.04784 0.04923 1.45% Castro::reset_internal_energy(Fab) 1008 0.04539 0.04754 0.04891 1.44% FabArray::ParallelCopy_nowait() 41 0.03988 0.04271 0.04492 1.33% StateDataPhysBCFunct::() 41 0.02996 0.03281 0.03604 1.06% StateData::FillBoundary(geom) 41 0.02984 0.0327 0.03592 1.06% Castro::construct_new_source() 50 0.02971 0.03096 0.03224 0.95% Gravity::interpolate_monopole_grav() 21 0.02652 0.02757 0.02929 0.86% Castro::construct_new_gravity_source() 10 0.02328 0.0246 0.02598 0.77% Castro::post_init() 1 0.02378 0.02434 0.02463 0.73% Amr::writePlotFile() 2 0.02215 0.02224 0.0225 0.66% Castro::finalize_do_advance() 10 0.01421 0.01752 0.02041 0.60% Castro::post_timestep() 10 0.01559 0.01665 0.01768 0.52% Castro::apply_source_to_state() 20 0.01111 0.01261 0.01338 0.39% FabArray::Saxpy() 20 0.01107 0.01256 0.01333 0.39% Castro::check_for_nan() 20 0.01078 0.0117 0.01303 0.38% MultiFab::contains_nan() 20 0.01075 0.01167 0.013 0.38% VisMF::Write(FabArray) 2 0.009207 0.009646 0.01193 0.35% Castro::Castro() 1 0.01067 0.01103 0.01184 0.35% FabArray::setDomainBndry() 41 0.008388 0.01052 0.01155 0.34% Castro::construct_old_source() 50 0.009103 0.009565 0.01 0.30% Castro::construct_old_gravity_source() 10 0.009036 0.009496 0.009924 0.29% Castro::computeNewDt() 9 0.008784 0.008803 0.008818 0.26% Castro::initMFs() 1 0.006341 0.006705 0.008622 0.25% Castro::enforce_min_density() 62 0.005686 0.00613 0.0065 0.19% Other 199 0.02054 0.02457 0.0276 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6771 KiB 6779 KiB 6782 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4566 KiB 4570 KiB 4573 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 231 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2814 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 240 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 42 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 74 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized