Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:35 UTC on 2025-04-02. Successfully read inputs file ... Castro git describe: 25.03-9-gddca91656 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016387435 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346517603 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.358053336 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.334675383 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.335042463 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.407105794 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.317481663 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.324983802 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.323976822 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.320741336 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.31878813 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007965298 seconds Ending run at 05:19:39 UTC on 2025-04-02. Run time = 3.571096486 Run time without initialization = 3.400757306 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5686 ... 3.5702 ... 3.5711 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2719 2.3255 2.4487 68.57% Gravity::make_radial_gravity() 21 0.3013 0.305 0.3102 8.69% check_for_negative_density() 10 0.007087 0.1325 0.1864 5.22% Castro::initData() 1 0.04179 0.07406 0.1016 2.84% amrex::Copy() 193 0.08521 0.08898 0.09841 2.76% FabArray::ParallelCopy_finish() 41 0.06882 0.08047 0.09429 2.64% Castro::estTimeStep() 21 0.02938 0.05783 0.0922 2.58% FabArray::setVal() 143 0.06784 0.07273 0.08246 2.31% Castro::reset_internal_energy(Fab) 1008 0.04567 0.04795 0.04992 1.40% Castro::normalize_species() 62 0.04591 0.0466 0.04727 1.32% FabArray::ParallelCopy_nowait() 41 0.04325 0.04546 0.04714 1.32% FillPatchIterator::Initialize 41 0.03226 0.03632 0.03876 1.09% StateData::FillBoundary(geom) 41 0.0324 0.0346 0.03711 1.04% Gravity::interpolate_monopole_grav() 21 0.02723 0.02763 0.02928 0.82% Castro::construct_new_gravity_source() 10 0.02435 0.02522 0.02619 0.73% Castro::initialize_do_advance() 10 0.0148 0.018 0.01964 0.55% Castro::computeTemp() 63 0.01761 0.01874 0.01939 0.54% FabArray::Saxpy() 20 0.01309 0.0147 0.01582 0.44% MultiFab::contains_nan() 20 0.01073 0.01232 0.01573 0.44% Castro::initialize_advance() 10 0.01037 0.01155 0.01389 0.39% VisMF::Write(FabArray) 2 0.009442 0.01016 0.01355 0.38% Amr::writePlotFile() 2 0.008334 0.0118 0.01274 0.36% FabArray::setDomainBndry() 41 0.00931 0.01151 0.01259 0.35% Castro::construct_old_gravity_source() 10 0.009122 0.01048 0.01138 0.32% Castro::initMFs() 1 0.006497 0.007166 0.008364 0.23% Castro::construct_new_source() 50 0.00659 0.006813 0.007189 0.20% main() 1 0.003258 0.004437 0.004712 0.13% Gravity::get_new_grav_vector() 11 0.00356 0.003887 0.004136 0.12% Gravity::get_old_grav_vector() 10 0.001994 0.002347 0.002798 0.08% Amr::coarseTimeStep() 10 0.000979 0.001509 0.001822 0.05% Castro::finalize_do_advance() 10 0.001205 0.001249 0.00136 0.04% AmrLevel::FillPatch() 41 0.0009295 0.001053 0.001275 0.04% Amr::timeStep() 10 0.0001551 0.0002283 0.0004432 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002908 0.0003077 0.0003346 0.01% Castro::do_advance_ctu() 10 0.0001617 0.0001879 0.0002136 0.01% Castro::clean_state() 62 0.0001528 0.000175 0.0002057 0.01% StateDataPhysBCFunct::() 41 0.0001057 0.0001253 0.0001692 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001138 0.0001277 0.000161 0.00% FabArray::ParallelCopy() 41 8.939e-05 0.0001065 0.0001322 0.00% Castro::do_old_sources() 10 9.999e-05 0.0001108 0.0001223 0.00% FillPatchSingleLevel 41 6.655e-05 7.467e-05 9.77e-05 0.00% Castro::construct_old_source() 50 7.017e-05 7.855e-05 9.009e-05 0.00% Castro::advance() 10 5.325e-05 6.117e-05 8.79e-05 0.00% Amr::FinalizeInit() 1 3.701e-06 1.478e-05 8.541e-05 0.00% Castro::do_new_sources() 10 6.529e-05 7.34e-05 8.334e-05 0.00% Castro::Castro() 1 5.073e-05 6.57e-05 8.102e-05 0.00% Castro::construct_old_gravity() 10 3.737e-05 4.921e-05 7.294e-05 0.00% Castro::subcycle_advance_ctu() 10 4.705e-05 5.553e-05 7.198e-05 0.00% Amr::defBaseLevel() 1 4.431e-05 5.049e-05 6.65e-05 0.00% Castro::apply_source_to_state() 20 5.148e-05 5.464e-05 5.888e-05 0.00% Castro::construct_new_gravity() 10 3.003e-05 3.916e-05 5.814e-05 0.00% Castro::computeNewDt() 9 1.129e-05 2.535e-05 5.677e-05 0.00% Castro::check_for_nan() 20 2.791e-05 3.117e-05 3.57e-05 0.00% Castro::expand_state() 10 2.572e-05 2.989e-05 3.44e-05 0.00% Castro::post_timestep() 10 1.573e-05 1.855e-05 2.069e-05 0.00% Castro::post_init() 1 1.468e-05 1.627e-05 1.773e-05 0.00% Amr::InitializeInit() 1 2.449e-06 3.253e-06 6.601e-06 0.00% Amr::init() 1 1.545e-06 2.294e-06 5.4e-06 0.00% Castro::computeInitialDt() 2 3.02e-06 3.705e-06 5.05e-06 0.00% Amr::initialInit() 1 1.608e-06 1.824e-06 2.142e-06 0.00% Other 261 0.01662 0.01958 0.02203 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.569 3.57 3.571 100.00% Amr::coarseTimeStep() 10 3.388 3.388 3.388 94.88% Amr::timeStep() 10 3.37 3.372 3.373 94.45% Castro::advance() 10 3.353 3.356 3.356 93.99% Castro::subcycle_advance_ctu() 10 3.266 3.277 3.282 91.92% Castro::do_advance_ctu() 10 3.266 3.277 3.282 91.91% Castro::construct_ctu_hydro_source() 10 2.476 2.48 2.483 69.53% Gravity::make_radial_gravity() 21 0.321 0.3238 0.3276 9.17% AmrLevel::FillPatch() 41 0.2249 0.2455 0.2564 7.18% Gravity::get_new_grav_vector() 11 0.2151 0.2167 0.2179 6.10% FillPatchIterator::Initialize 41 0.1914 0.2089 0.2173 6.09% Castro::construct_old_gravity() 10 0.1959 0.1999 0.2056 5.76% Gravity::get_old_grav_vector() 10 0.1951 0.199 0.2049 5.74% Castro::initialize_do_advance() 10 0.1798 0.1938 0.2012 5.63% Castro::construct_new_gravity() 10 0.1896 0.1905 0.1917 5.37% check_for_negative_density() 10 0.007087 0.1325 0.1864 5.22% FillPatchIterator::FillFromLevel0() 41 0.1488 0.1611 0.173 4.85% FillPatchSingleLevel 41 0.1487 0.1609 0.1729 4.84% Amr::init() 1 0.1685 0.1694 0.17 4.76% Amr::initialInit() 1 0.1515 0.1524 0.1532 4.29% Castro::expand_state() 10 0.1215 0.1374 0.1461 4.09% FabArray::ParallelCopy() 41 0.1139 0.1261 0.1378 3.86% Amr::InitializeInit() 1 0.06338 0.09562 0.1228 3.44% Amr::defBaseLevel() 1 0.06337 0.09562 0.1228 3.44% Castro::clean_state() 62 0.1158 0.1192 0.1226 3.43% Castro::do_old_sources() 10 0.1036 0.1113 0.1162 3.25% Castro::initData() 1 0.04568 0.07796 0.1056 2.96% amrex::Copy() 193 0.08521 0.08898 0.09841 2.76% FabArray::ParallelCopy_finish() 41 0.06882 0.08047 0.09429 2.64% Castro::estTimeStep() 21 0.02938 0.05783 0.0922 2.58% Amr::FinalizeInit() 1 0.03007 0.0568 0.08957 2.51% Castro::initialize_advance() 10 0.07028 0.07542 0.08431 2.36% FabArray::setVal() 143 0.06784 0.07273 0.08246 2.31% Castro::do_new_sources() 10 0.0657 0.06742 0.0703 1.97% Castro::computeTemp() 63 0.06359 0.067 0.06965 1.95% Castro::computeInitialDt() 2 0.002271 0.02911 0.06203 1.74% Castro::reset_internal_energy(MultiFab) 63 0.04597 0.04826 0.05025 1.41% Castro::reset_internal_energy(Fab) 1008 0.04567 0.04795 0.04992 1.40% Castro::normalize_species() 62 0.04591 0.0466 0.04727 1.32% FabArray::ParallelCopy_nowait() 41 0.04338 0.04556 0.04723 1.32% StateDataPhysBCFunct::() 41 0.03254 0.03473 0.03724 1.04% StateData::FillBoundary(geom) 41 0.0324 0.0346 0.03711 1.04% Castro::construct_new_source() 50 0.03108 0.03204 0.03335 0.93% Gravity::interpolate_monopole_grav() 21 0.02723 0.02763 0.02928 0.82% Castro::post_init() 1 0.02685 0.02724 0.02778 0.78% Castro::construct_new_gravity_source() 10 0.02435 0.02522 0.02619 0.73% Amr::writePlotFile() 2 0.0246 0.02497 0.02541 0.71% Castro::finalize_do_advance() 10 0.01337 0.01656 0.01856 0.52% Castro::post_timestep() 10 0.01571 0.01602 0.01625 0.46% Castro::apply_source_to_state() 20 0.01314 0.01475 0.01587 0.44% FabArray::Saxpy() 20 0.01309 0.0147 0.01582 0.44% Castro::check_for_nan() 20 0.01075 0.01235 0.01577 0.44% MultiFab::contains_nan() 20 0.01073 0.01232 0.01573 0.44% Castro::computeNewDt() 9 0.01283 0.01344 0.01554 0.44% VisMF::Write(FabArray) 2 0.009442 0.01016 0.01355 0.38% FabArray::setDomainBndry() 41 0.00931 0.01151 0.01259 0.35% Castro::Castro() 1 0.01013 0.01094 0.01195 0.33% Castro::construct_old_source() 50 0.009194 0.01056 0.01147 0.32% Castro::construct_old_gravity_source() 10 0.009122 0.01048 0.01138 0.32% Castro::initMFs() 1 0.006497 0.007166 0.008364 0.23% Other 261 0.02694 0.03148 0.03558 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6791 KiB 6796 KiB 6798 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4572 KiB 4584 KiB 4591 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 234 KiB 260 KiB 272 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 231 KiB 233 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 48 KiB 55 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized