Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:59 UTC on 2025-04-03. Successfully read inputs file ... Castro git describe: 25.04 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014943158 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360922235 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.349979545 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.320217133 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.355373932 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.337046689 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.29828217 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295614849 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.294269895 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295375134 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296471555 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007582351 seconds Ending run at 05:19:02 UTC on 2025-04-03. Run time = 3.433150127 Run time without initialization = 3.251080314 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4310 ... 3.4324 ... 3.4333 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1652 2.2082 2.2434 65.34% Gravity::make_radial_gravity() 21 0.2961 0.3009 0.3078 8.97% check_for_negative_density() 10 0.07602 0.1143 0.1593 4.64% Castro::estTimeStep() 21 0.03076 0.06843 0.1095 3.19% Castro::initData() 1 0.03862 0.07314 0.1061 3.09% FabArray::setVal() 143 0.06554 0.07839 0.0873 2.54% amrex::Copy() 193 0.075 0.07749 0.07951 2.32% FabArray::ParallelCopy_finish() 41 0.04327 0.05614 0.07099 2.07% Castro::reset_internal_energy(Fab) 1008 0.04213 0.04604 0.04792 1.40% Castro::normalize_species() 62 0.04574 0.04659 0.04752 1.38% Amr::writePlotFile() 2 0.04229 0.04492 0.04559 1.33% FabArray::ParallelCopy_nowait() 41 0.03766 0.0399 0.042 1.22% FillPatchIterator::Initialize 41 0.0326 0.0351 0.03787 1.10% StateData::FillBoundary(geom) 41 0.02976 0.03309 0.03657 1.07% Castro::construct_new_gravity_source() 10 0.02058 0.0237 0.02762 0.80% Gravity::interpolate_monopole_grav() 21 0.02667 0.02691 0.02726 0.79% Castro::initialize_do_advance() 10 0.01682 0.01924 0.0213 0.62% Castro::computeTemp() 63 0.01747 0.01813 0.01867 0.54% FabArray::Saxpy() 20 0.01049 0.01184 0.01306 0.38% Castro::initialize_advance() 10 0.009787 0.01138 0.01302 0.38% VisMF::Write(FabArray) 2 0.009484 0.009986 0.01251 0.36% Castro::initMFs() 1 0.008809 0.009758 0.01199 0.35% MultiFab::contains_nan() 20 0.01063 0.01119 0.01162 0.34% FabArray::setDomainBndry() 41 0.008483 0.009744 0.01046 0.30% Castro::construct_old_gravity_source() 10 0.007874 0.009132 0.009566 0.28% Amr::coarseTimeStep() 10 0.001357 0.00585 0.007585 0.22% Castro::construct_new_source() 50 0.005453 0.005786 0.005989 0.17% main() 1 0.004105 0.004446 0.00472 0.14% Gravity::get_new_grav_vector() 11 0.003007 0.003509 0.003828 0.11% Gravity::get_old_grav_vector() 10 0.001756 0.002117 0.002497 0.07% Castro::finalize_do_advance() 10 0.001317 0.001794 0.002355 0.07% AmrLevel::FillPatch() 41 0.001168 0.001636 0.002315 0.07% Castro::Castro() 1 5.657e-05 0.0001804 0.0007944 0.02% Amr::timeStep() 10 0.0001434 0.0001863 0.0004049 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002855 0.0002971 0.0003175 0.01% Castro::do_advance_ctu() 10 0.0001344 0.000156 0.0001988 0.01% Castro::clean_state() 62 0.0001502 0.0001602 0.0001763 0.01% StateDataPhysBCFunct::() 41 9.79e-05 0.0001125 0.0001387 0.00% FillPatchIterator::FillFromLevel0() 41 9.043e-05 0.0001031 0.0001279 0.00% FabArray::ParallelCopy() 41 8.51e-05 9.207e-05 9.904e-05 0.00% Castro::do_old_sources() 10 7.759e-05 8.643e-05 9.782e-05 0.00% Castro::construct_old_source() 50 5.712e-05 6.684e-05 8.667e-05 0.00% Amr::FinalizeInit() 1 4.222e-06 1.485e-05 8.342e-05 0.00% FillPatchSingleLevel 41 5.871e-05 6.459e-05 7.167e-05 0.00% Castro::subcycle_advance_ctu() 10 4.352e-05 5.141e-05 7.07e-05 0.00% Castro::do_new_sources() 10 5.482e-05 6.302e-05 6.94e-05 0.00% Castro::apply_source_to_state() 20 3.612e-05 4.209e-05 5.941e-05 0.00% Amr::defBaseLevel() 1 3.931e-05 4.628e-05 5.705e-05 0.00% Castro::advance() 10 4.281e-05 4.709e-05 5.62e-05 0.00% Castro::construct_old_gravity() 10 3.172e-05 3.907e-05 4.69e-05 0.00% Castro::post_timestep() 10 1.376e-05 2.316e-05 4.42e-05 0.00% Castro::expand_state() 10 2.064e-05 2.498e-05 4.255e-05 0.00% Castro::construct_new_gravity() 10 2.801e-05 3.381e-05 3.662e-05 0.00% Castro::check_for_nan() 20 2.552e-05 2.771e-05 3.13e-05 0.00% Castro::post_init() 1 1.473e-05 1.827e-05 2.67e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.743e-06 1.199e-05 1.612e-05 0.00% Castro::computeNewDt() 9 9.454e-06 1.031e-05 1.102e-05 0.00% Amr::InitializeInit() 1 2.436e-06 3.161e-06 5.112e-06 0.00% Castro::computeInitialDt() 2 3.297e-06 4.321e-06 5.046e-06 0.00% Amr::init() 1 1.78e-06 2.247e-06 3.56e-06 0.00% Amr::initialInit() 1 1.922e-06 2.153e-06 2.947e-06 0.00% Other 260 0.01827 0.02163 0.02414 0.70% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.431 3.432 3.433 100.00% Amr::coarseTimeStep() 10 3.204 3.204 3.204 93.32% Amr::timeStep() 10 3.187 3.188 3.193 92.99% Castro::advance() 10 3.17 3.172 3.174 92.44% Castro::subcycle_advance_ctu() 10 3.086 3.092 3.1 90.28% Castro::do_advance_ctu() 10 3.086 3.092 3.099 90.28% Castro::construct_ctu_hydro_source() 10 2.341 2.344 2.346 68.33% Gravity::make_radial_gravity() 21 0.3126 0.3166 0.323 9.41% Gravity::get_new_grav_vector() 11 0.2123 0.2159 0.22 6.41% AmrLevel::FillPatch() 41 0.1937 0.2066 0.2125 6.19% Castro::construct_new_gravity() 10 0.1864 0.1898 0.194 5.65% Castro::construct_old_gravity() 10 0.1841 0.1881 0.1923 5.60% Gravity::get_old_grav_vector() 10 0.183 0.1872 0.1916 5.58% FillPatchIterator::Initialize 41 0.1608 0.1744 0.1827 5.32% Amr::init() 1 0.1799 0.1812 0.1819 5.30% Castro::initialize_do_advance() 10 0.1659 0.1701 0.177 5.15% Amr::initialInit() 1 0.1647 0.166 0.1666 4.85% check_for_negative_density() 10 0.07602 0.1143 0.1593 4.64% FillPatchIterator::FillFromLevel0() 41 0.1151 0.1296 0.1416 4.12% FillPatchSingleLevel 41 0.115 0.1295 0.1415 4.12% Amr::InitializeInit() 1 0.06875 0.1033 0.1356 3.95% Amr::defBaseLevel() 1 0.06874 0.1033 0.1356 3.95% Castro::expand_state() 10 0.1081 0.1139 0.1227 3.57% Castro::clean_state() 62 0.1117 0.1162 0.1198 3.49% Castro::initData() 1 0.04363 0.07805 0.1109 3.23% Castro::estTimeStep() 21 0.03076 0.06843 0.1095 3.19% FabArray::ParallelCopy() 41 0.08373 0.09622 0.1088 3.17% Castro::do_old_sources() 10 0.08859 0.09361 0.0985 2.87% Amr::FinalizeInit() 1 0.02996 0.06266 0.09787 2.85% FabArray::setVal() 143 0.06554 0.07839 0.0873 2.54% Castro::initialize_advance() 10 0.06901 0.07636 0.08237 2.40% amrex::Copy() 193 0.075 0.07749 0.07951 2.32% Castro::do_new_sources() 10 0.05979 0.06482 0.07161 2.09% FabArray::ParallelCopy_finish() 41 0.04327 0.05614 0.07099 2.07% Castro::computeInitialDt() 2 0.002216 0.03501 0.07011 2.04% Castro::computeTemp() 63 0.05989 0.06446 0.06689 1.95% Amr::writePlotFile() 2 0.05751 0.05762 0.05778 1.68% Castro::reset_internal_energy(MultiFab) 63 0.04242 0.04634 0.04822 1.40% Castro::reset_internal_energy(Fab) 1008 0.04213 0.04604 0.04792 1.40% Castro::normalize_species() 62 0.04574 0.04659 0.04752 1.38% FabArray::ParallelCopy_nowait() 41 0.03775 0.03999 0.04209 1.23% StateDataPhysBCFunct::() 41 0.02986 0.0332 0.03667 1.07% StateData::FillBoundary(geom) 41 0.02976 0.03309 0.03657 1.07% Castro::finalize_do_advance() 10 0.01623 0.02646 0.03505 1.02% Castro::construct_new_source() 50 0.02604 0.02949 0.03348 0.98% Castro::construct_new_gravity_source() 10 0.02058 0.0237 0.02762 0.80% Castro::post_init() 1 0.02686 0.02704 0.02728 0.79% Gravity::interpolate_monopole_grav() 21 0.02667 0.02691 0.02726 0.79% Castro::post_timestep() 10 0.0156 0.01626 0.0189 0.55% Castro::Castro() 1 0.01575 0.01638 0.01778 0.52% Castro::apply_source_to_state() 20 0.01055 0.01189 0.0131 0.38% FabArray::Saxpy() 20 0.01049 0.01184 0.01306 0.38% VisMF::Write(FabArray) 2 0.009484 0.009986 0.01251 0.36% Castro::initMFs() 1 0.008809 0.009758 0.01199 0.35% Castro::check_for_nan() 20 0.01066 0.01121 0.01164 0.34% MultiFab::contains_nan() 20 0.01063 0.01119 0.01162 0.34% FabArray::setDomainBndry() 41 0.008483 0.009744 0.01046 0.30% Castro::construct_old_source() 50 0.007931 0.009199 0.009627 0.28% Castro::construct_old_gravity_source() 10 0.007874 0.009132 0.009566 0.28% Castro::computeNewDt() 9 0.008747 0.008764 0.008782 0.26% AmrLevel::AmrLevel(dm) 1 0.007216 0.007534 0.008246 0.24% Other 260 0.0226 0.02837 0.03311 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8649 KiB 8659 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6749 KiB 6756 KiB 6761 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7127 KiB 7137 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4490 KiB 4498 KiB 4512 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 210 KiB 223 KiB 234 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2767 KiB 2771 KiB 2773 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 235 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 42 KiB 50 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized