Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:26 UTC on 2025-04-04. Successfully read inputs file ... Castro git describe: 25.04 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01479585 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.334133445 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.316821192 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.332244502 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.353313499 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.310731149 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.297861646 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297911332 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298659683 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297767818 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299465917 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007629115 seconds Ending run at 05:19:29 UTC on 2025-04-04. Run time = 3.587551487 Run time without initialization = 3.151965682 Average number of zones advanced per microsecond: 0.832 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.5857 ... 3.5871 ... 3.5881 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1514 2.2247 2.2820 63.60% Gravity::make_radial_gravity() 21 0.2882 0.2948 0.3062 8.53% DistributionMapping::LeastUsedCPUs() 1 3.274e-05 0.2357 0.2698 7.52% Amr::InitAmr() 1 0.0001844 0.03384 0.2693 7.50% check_for_negative_density() 10 0.03539 0.09308 0.1683 4.69% Castro::initData() 1 0.03783 0.07132 0.1049 2.92% Castro::estTimeStep() 21 0.02443 0.05913 0.09351 2.61% FabArray::ParallelCopy_finish() 41 0.03637 0.05037 0.09164 2.55% amrex::Copy() 193 0.05467 0.07224 0.08005 2.23% FabArray::setVal() 143 0.04075 0.05969 0.0658 1.83% Castro::normalize_species() 62 0.0451 0.04721 0.05336 1.49% Castro::reset_internal_energy(Fab) 1008 0.044 0.04561 0.04645 1.29% FabArray::ParallelCopy_nowait() 41 0.03194 0.0379 0.04053 1.13% FillPatchIterator::Initialize 41 0.02738 0.0313 0.0336 0.94% StateData::FillBoundary(geom) 41 0.02872 0.03142 0.03332 0.93% Gravity::interpolate_monopole_grav() 21 0.02621 0.02692 0.02776 0.77% Castro::construct_new_gravity_source() 10 0.019 0.02236 0.0246 0.69% Castro::computeTemp() 63 0.01743 0.01802 0.01839 0.51% Castro::initialize_do_advance() 10 0.01218 0.01508 0.01699 0.47% Castro::initialize_advance() 10 0.005448 0.01006 0.0137 0.38% Amr::writePlotFile() 2 0.007585 0.01045 0.01322 0.37% FabArray::Saxpy() 20 0.007775 0.01144 0.01317 0.37% VisMF::Write(FabArray) 2 0.008553 0.009853 0.01246 0.35% MultiFab::contains_nan() 20 0.009963 0.01093 0.01166 0.32% FabArray::setDomainBndry() 41 0.00735 0.009244 0.01065 0.30% Castro::construct_old_gravity_source() 10 0.005486 0.008598 0.009332 0.26% Castro::initMFs() 1 0.006616 0.006853 0.007316 0.20% Castro::construct_new_source() 50 0.00492 0.005657 0.005871 0.16% main() 1 0.003575 0.00443 0.004939 0.14% Gravity::get_new_grav_vector() 11 0.002889 0.003448 0.00384 0.11% Amr::coarseTimeStep() 10 0.001618 0.002067 0.002486 0.07% Gravity::get_old_grav_vector() 10 0.001847 0.002028 0.002403 0.07% AmrLevel::FillPatch() 41 0.0007688 0.001259 0.001964 0.05% Castro::finalize_do_advance() 10 0.0005367 0.001044 0.001644 0.05% Amr::timeStep() 10 0.0001296 0.0001926 0.0004265 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002758 0.0002878 0.0002949 0.01% Castro::do_advance_ctu() 10 0.0001439 0.0001675 0.0002027 0.01% Castro::clean_state() 62 0.0001372 0.0001579 0.0001781 0.00% FillPatchIterator::FillFromLevel0() 41 9.942e-05 0.0001088 0.0001405 0.00% StateDataPhysBCFunct::() 41 9.847e-05 0.000106 0.0001156 0.00% Castro::do_old_sources() 10 7.724e-05 9.18e-05 0.0001059 0.00% FabArray::ParallelCopy() 41 8.273e-05 9.031e-05 0.0001003 0.00% Castro::Castro() 1 5.975e-05 7.409e-05 9.105e-05 0.00% Amr::FinalizeInit() 1 3.452e-06 1.562e-05 8.981e-05 0.00% Castro::construct_old_source() 50 4.912e-05 6.759e-05 7.944e-05 0.00% Castro::do_new_sources() 10 5.072e-05 5.825e-05 7.752e-05 0.00% FillPatchSingleLevel 41 6.146e-05 6.583e-05 7.696e-05 0.00% Castro::apply_source_to_state() 20 4.346e-05 4.962e-05 5.955e-05 0.00% Amr::defBaseLevel() 1 3.997e-05 4.482e-05 5.252e-05 0.00% Castro::construct_old_gravity() 10 3.175e-05 4.238e-05 5.23e-05 0.00% Castro::advance() 10 4.298e-05 4.601e-05 5.053e-05 0.00% Castro::subcycle_advance_ctu() 10 3.746e-05 4.353e-05 4.917e-05 0.00% Castro::construct_new_gravity() 10 2.809e-05 3.42e-05 3.849e-05 0.00% Castro::expand_state() 10 2.063e-05 2.65e-05 3.706e-05 0.00% Castro::check_for_nan() 20 2.439e-05 2.774e-05 3.164e-05 0.00% Castro::post_init() 1 1.463e-05 1.629e-05 2.135e-05 0.00% Castro::post_timestep() 10 1.316e-05 1.623e-05 1.827e-05 0.00% Castro::computeNewDt() 9 9.007e-06 1.196e-05 1.802e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.978e-06 5.336e-06 7.943e-06 0.00% Amr::InitializeInit() 1 2.772e-06 3.647e-06 6.096e-06 0.00% Castro::computeInitialDt() 2 3.47e-06 4.021e-06 4.69e-06 0.00% Amr::init() 1 1.781e-06 2.136e-06 2.861e-06 0.00% Amr::initialInit() 1 1.72e-06 2.029e-06 2.547e-06 0.00% Other 258 0.01541 0.0172 0.01857 0.52% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.586 3.587 3.588 100.00% Amr::coarseTimeStep() 10 3.139 3.139 3.139 87.50% Amr::timeStep() 10 3.127 3.128 3.128 87.18% Castro::advance() 10 3.11 3.111 3.112 86.73% Castro::subcycle_advance_ctu() 10 3.04 3.046 3.06 85.28% Castro::do_advance_ctu() 10 3.04 3.046 3.06 85.28% Castro::construct_ctu_hydro_source() 10 2.337 2.339 2.342 65.28% Amr::init() 1 0.166 0.4016 0.4358 12.15% Amr::initialInit() 1 0.151 0.3866 0.4208 11.73% Amr::InitializeInit() 1 0.06011 0.3275 0.394 10.98% Amr::defBaseLevel() 1 0.0601 0.3275 0.394 10.98% Gravity::make_radial_gravity() 21 0.3034 0.3099 0.318 8.86% DistributionMapping::SFCProcessorMapDoIt() 1 4.145e-05 0.2357 0.2698 7.52% DistributionMapping::LeastUsedCPUs() 1 3.274e-05 0.2357 0.2698 7.52% Amr::InitAmr() 1 0.0001867 0.03384 0.2693 7.50% AmrLevel::FillPatch() 41 0.1762 0.1907 0.2157 6.01% Gravity::get_new_grav_vector() 11 0.2026 0.2042 0.2054 5.73% Castro::construct_old_gravity() 10 0.1801 0.1859 0.1933 5.39% Gravity::get_old_grav_vector() 10 0.1794 0.1853 0.1928 5.37% FillPatchIterator::Initialize 41 0.1482 0.1607 0.1911 5.33% Castro::construct_new_gravity() 10 0.1796 0.1812 0.182 5.07% check_for_negative_density() 10 0.03539 0.09308 0.1683 4.69% Castro::initialize_do_advance() 10 0.1471 0.1578 0.1645 4.58% FillPatchIterator::FillFromLevel0() 41 0.1057 0.1202 0.1557 4.34% FillPatchSingleLevel 41 0.1056 0.12 0.1556 4.34% FabArray::ParallelCopy() 41 0.07468 0.08846 0.1238 3.45% Castro::clean_state() 62 0.1148 0.1161 0.12 3.34% Castro::expand_state() 10 0.09757 0.1067 0.1184 3.30% Castro::initData() 1 0.04141 0.07513 0.1079 3.01% Castro::estTimeStep() 21 0.02443 0.05913 0.09351 2.61% Castro::do_old_sources() 10 0.08674 0.08915 0.0926 2.58% Amr::FinalizeInit() 1 0.02616 0.05909 0.09243 2.58% FabArray::ParallelCopy_finish() 41 0.03637 0.05037 0.09164 2.55% amrex::Copy() 193 0.05467 0.07224 0.08005 2.23% Castro::initialize_advance() 10 0.04813 0.06275 0.06787 1.89% Castro::computeInitialDt() 2 0.002077 0.03449 0.06772 1.89% Castro::do_new_sources() 10 0.05287 0.06092 0.06686 1.86% FabArray::setVal() 143 0.04075 0.05969 0.0658 1.83% Castro::computeTemp() 63 0.06172 0.06392 0.06508 1.81% Castro::normalize_species() 62 0.0451 0.04721 0.05336 1.49% Castro::reset_internal_energy(MultiFab) 63 0.0443 0.0459 0.04673 1.30% Castro::reset_internal_energy(Fab) 1008 0.044 0.04561 0.04645 1.29% FabArray::ParallelCopy_nowait() 41 0.03204 0.03799 0.04061 1.13% StateDataPhysBCFunct::() 41 0.02882 0.03153 0.03343 0.93% StateData::FillBoundary(geom) 41 0.02872 0.03142 0.03332 0.93% Castro::construct_new_source() 50 0.02392 0.02802 0.03048 0.85% Gravity::interpolate_monopole_grav() 21 0.02621 0.02692 0.02776 0.77% Castro::finalize_do_advance() 10 0.01182 0.0172 0.0252 0.70% Castro::construct_new_gravity_source() 10 0.019 0.02236 0.0246 0.69% Castro::post_init() 1 0.02369 0.02409 0.02418 0.67% Amr::writePlotFile() 2 0.02266 0.02277 0.02329 0.65% Castro::post_timestep() 10 0.01588 0.01616 0.0173 0.48% Castro::apply_source_to_state() 20 0.007825 0.01149 0.01322 0.37% FabArray::Saxpy() 20 0.007775 0.01144 0.01317 0.37% VisMF::Write(FabArray) 2 0.008553 0.009853 0.01246 0.35% Castro::check_for_nan() 20 0.00999 0.01096 0.01168 0.33% MultiFab::contains_nan() 20 0.009963 0.01093 0.01166 0.32% Castro::Castro() 1 0.01012 0.01094 0.01141 0.32% FabArray::setDomainBndry() 41 0.00735 0.009244 0.01065 0.30% Castro::construct_old_source() 50 0.005535 0.008665 0.009412 0.26% Castro::construct_old_gravity_source() 10 0.005486 0.008598 0.009332 0.26% Castro::computeNewDt() 9 0.008485 0.0085 0.008518 0.24% Castro::initMFs() 1 0.006616 0.006853 0.007316 0.20% Other 258 0.02469 0.02722 0.0292 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 41 B 65 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8011 KiB 8019 KiB 8022 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6263 KiB 6268 KiB 6271 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 6598 KiB 6604 KiB 6607 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4234 KiB 4241 KiB 4262 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 184 KiB 199 KiB 226 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2598 KiB 2601 KiB 2602 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 215 KiB 220 KiB 226 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 31 KiB 37 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 1875 KiB 1877 KiB 1878 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 72 KiB 73 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 66 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized