Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:10 UTC on 2025-04-07. Successfully read inputs file ... Castro git describe: 25.04 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017356879 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.376968636 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.36962035 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.380135738 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.39387046 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371467947 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.34962519 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.316650685 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.313229584 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.332983413 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.35606121 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00805745 seconds Ending run at 05:20:14 UTC on 2025-04-07. Run time = 3.753597318 Run time without initialization = 3.574043467 Average number of zones advanced per microsecond: 0.733 Average number of zones advanced per microsecond per rank: 0.092 TinyProfiler total time across processes [min...avg...max]: 3.7476 ... 3.7507 ... 3.7537 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3757 2.4637 2.5343 67.52% Gravity::make_radial_gravity() 21 0.3074 0.3157 0.332 8.84% check_for_negative_density() 10 0.08146 0.1523 0.2424 6.46% FabArray::ParallelCopy_finish() 41 0.04258 0.06064 0.1057 2.82% Castro::initData() 1 0.04824 0.08085 0.1039 2.77% amrex::Copy() 193 0.07329 0.09278 0.1022 2.72% FabArray::setVal() 143 0.07274 0.08002 0.09066 2.42% Castro::estTimeStep() 21 0.02441 0.05058 0.08264 2.20% Castro::normalize_species() 62 0.0473 0.04971 0.05531 1.47% Castro::reset_internal_energy(Fab) 1008 0.04755 0.0509 0.05262 1.40% FabArray::ParallelCopy_nowait() 41 0.04135 0.04699 0.04883 1.30% StateData::FillBoundary(geom) 41 0.03157 0.03523 0.03947 1.05% FillPatchIterator::Initialize 41 0.0306 0.036 0.0385 1.03% Castro::construct_new_gravity_source() 10 0.02432 0.02744 0.0298 0.79% Gravity::interpolate_monopole_grav() 21 0.0268 0.0274 0.02787 0.74% Castro::initialize_do_advance() 10 0.01439 0.01837 0.02151 0.57% Castro::computeTemp() 63 0.01898 0.02015 0.02065 0.55% FabArray::Saxpy() 20 0.0115 0.01494 0.01606 0.43% Amr::writePlotFile() 2 0.008535 0.0119 0.01576 0.42% Castro::initialize_advance() 10 0.006361 0.01189 0.0145 0.39% MultiFab::contains_nan() 20 0.01211 0.01308 0.01381 0.37% VisMF::Write(FabArray) 2 0.008663 0.0108 0.0138 0.37% FabArray::setDomainBndry() 41 0.009233 0.01185 0.01371 0.37% Castro::construct_old_gravity_source() 10 0.007501 0.0105 0.01169 0.31% Castro::initMFs() 1 0.006812 0.009152 0.01145 0.30% StateData::define() 4 0.005689 0.007267 0.008793 0.23% Castro::construct_new_source() 50 0.005984 0.007057 0.007517 0.20% Gravity::get_new_grav_vector() 11 0.003543 0.003981 0.004861 0.13% main() 1 0.003061 0.004119 0.004833 0.13% Amr::coarseTimeStep() 10 0.001585 0.002384 0.003284 0.09% Gravity::get_old_grav_vector() 10 0.002004 0.002457 0.00297 0.08% Castro::finalize_do_advance() 10 0.0005466 0.001129 0.001273 0.03% AmrLevel::FillPatch() 41 0.0007658 0.0009951 0.001078 0.03% Amr::timeStep() 10 0.0001641 0.0002079 0.0003721 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000318 0.0003279 0.0003424 0.01% Castro::do_advance_ctu() 10 0.0001506 0.0001991 0.000233 0.01% Castro::clean_state() 62 0.0001609 0.0001846 0.0002041 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001072 0.0001261 0.0001482 0.00% StateDataPhysBCFunct::() 41 0.0001133 0.0001253 0.0001416 0.00% Castro::do_old_sources() 10 7.571e-05 0.0001079 0.0001283 0.00% FabArray::ParallelCopy() 41 9.089e-05 0.000107 0.0001196 0.00% Castro::Castro() 1 7.602e-05 8.887e-05 0.0001069 0.00% Castro::construct_old_source() 50 5.01e-05 7.405e-05 8.861e-05 0.00% Amr::FinalizeInit() 1 4.336e-06 1.599e-05 8.295e-05 0.00% FillPatchSingleLevel 41 6.689e-05 7.415e-05 8.169e-05 0.00% Castro::do_new_sources() 10 5.714e-05 7.137e-05 8.057e-05 0.00% Castro::apply_source_to_state() 20 3.932e-05 5.73e-05 7.564e-05 0.00% Castro::advance() 10 4.483e-05 5.48e-05 6.133e-05 0.00% Castro::subcycle_advance_ctu() 10 5.214e-05 5.586e-05 5.8e-05 0.00% Castro::construct_old_gravity() 10 3.86e-05 4.872e-05 5.779e-05 0.00% Amr::defBaseLevel() 1 3.762e-05 4.687e-05 5.396e-05 0.00% Castro::construct_new_gravity() 10 3.15e-05 3.889e-05 4.301e-05 0.00% Castro::check_for_nan() 20 2.882e-05 3.216e-05 3.618e-05 0.00% Castro::expand_state() 10 2.637e-05 3.017e-05 3.548e-05 0.00% Castro::post_timestep() 10 1.493e-05 2.011e-05 2.662e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.019e-05 1.714e-05 2.421e-05 0.00% Castro::post_init() 1 1.392e-05 1.805e-05 2.012e-05 0.00% Castro::computeNewDt() 9 1.049e-05 1.3e-05 1.622e-05 0.00% Amr::InitializeInit() 1 2.45e-06 3.938e-06 7.808e-06 0.00% Amr::init() 1 2.02e-06 2.993e-06 6.278e-06 0.00% Castro::computeInitialDt() 2 4.104e-06 4.71e-06 5.402e-06 0.00% Amr::initialInit() 1 1.564e-06 2.328e-06 2.942e-06 0.00% Other 256 0.01094 0.0163 0.02053 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.748 3.751 3.754 100.00% Amr::coarseTimeStep() 10 3.561 3.561 3.561 94.87% Amr::timeStep() 10 3.547 3.548 3.549 94.55% Castro::advance() 10 3.531 3.531 3.532 94.08% Castro::subcycle_advance_ctu() 10 3.44 3.448 3.46 92.19% Castro::do_advance_ctu() 10 3.439 3.448 3.46 92.19% Castro::construct_ctu_hydro_source() 10 2.637 2.64 2.643 70.41% Gravity::make_radial_gravity() 21 0.3279 0.3344 0.3466 9.23% AmrLevel::FillPatch() 41 0.2138 0.2294 0.2522 6.72% check_for_negative_density() 10 0.08146 0.1523 0.2424 6.46% Gravity::get_new_grav_vector() 11 0.225 0.2265 0.2275 6.06% FillPatchIterator::Initialize 41 0.1761 0.1913 0.2214 5.90% Castro::construct_old_gravity() 10 0.1958 0.2012 0.2103 5.60% Gravity::get_old_grav_vector() 10 0.1949 0.2003 0.2095 5.58% Castro::construct_new_gravity() 10 0.1988 0.1999 0.2011 5.36% Castro::initialize_do_advance() 10 0.1774 0.1852 0.1914 5.10% FillPatchIterator::FillFromLevel0() 41 0.1253 0.1434 0.1816 4.84% FillPatchSingleLevel 41 0.1252 0.1433 0.1815 4.83% Amr::init() 1 0.1744 0.1769 0.1793 4.78% Amr::initialInit() 1 0.1565 0.1591 0.1617 4.31% FabArray::ParallelCopy() 41 0.09022 0.1078 0.1472 3.92% Castro::expand_state() 10 0.1168 0.1264 0.1369 3.65% Castro::clean_state() 62 0.1204 0.1268 0.1319 3.51% Amr::InitializeInit() 1 0.0789 0.1094 0.1303 3.47% Amr::defBaseLevel() 1 0.07889 0.1094 0.1303 3.47% Castro::do_old_sources() 10 0.1037 0.1077 0.1112 2.96% Castro::initData() 1 0.05277 0.08552 0.1086 2.89% FabArray::ParallelCopy_finish() 41 0.04258 0.06064 0.1057 2.82% amrex::Copy() 193 0.07329 0.09278 0.1022 2.72% FabArray::setVal() 143 0.07274 0.08002 0.09066 2.42% Castro::initialize_advance() 10 0.06574 0.07877 0.0873 2.33% Castro::estTimeStep() 21 0.02441 0.05058 0.08264 2.20% Castro::do_new_sources() 10 0.06763 0.07473 0.08256 2.20% Amr::FinalizeInit() 1 0.03091 0.04965 0.07784 2.07% Castro::computeTemp() 63 0.06685 0.07138 0.07344 1.96% Castro::normalize_species() 62 0.0473 0.04971 0.05531 1.47% Castro::reset_internal_energy(MultiFab) 63 0.04788 0.05123 0.05295 1.41% Castro::reset_internal_energy(Fab) 1008 0.04755 0.0509 0.05262 1.40% Castro::computeInitialDt() 2 0.002501 0.02123 0.04953 1.32% FabArray::ParallelCopy_nowait() 41 0.04145 0.0471 0.04893 1.30% StateDataPhysBCFunct::() 41 0.03171 0.03535 0.03961 1.06% StateData::FillBoundary(geom) 41 0.03157 0.03523 0.03947 1.05% Castro::construct_new_source() 50 0.03031 0.0345 0.03691 0.98% Castro::construct_new_gravity_source() 10 0.02432 0.02744 0.0298 0.79% Castro::post_init() 1 0.0277 0.02795 0.02833 0.75% Castro::finalize_do_advance() 10 0.01317 0.02138 0.02792 0.74% Gravity::interpolate_monopole_grav() 21 0.0268 0.0274 0.02787 0.74% Amr::writePlotFile() 2 0.02565 0.02596 0.02646 0.70% Castro::post_timestep() 10 0.01635 0.01689 0.01803 0.48% Castro::Castro() 1 0.01094 0.01404 0.01703 0.45% Castro::apply_source_to_state() 20 0.01154 0.015 0.01612 0.43% FabArray::Saxpy() 20 0.0115 0.01494 0.01606 0.43% Castro::check_for_nan() 20 0.01213 0.01311 0.01384 0.37% MultiFab::contains_nan() 20 0.01211 0.01308 0.01381 0.37% VisMF::Write(FabArray) 2 0.008663 0.0108 0.0138 0.37% FabArray::setDomainBndry() 41 0.009233 0.01185 0.01371 0.37% Castro::construct_old_source() 50 0.007551 0.01057 0.01177 0.31% Castro::construct_old_gravity_source() 10 0.007501 0.0105 0.01169 0.31% Castro::initMFs() 1 0.006812 0.009152 0.01145 0.30% Castro::computeNewDt() 9 0.009094 0.009118 0.009137 0.24% AmrLevel::AmrLevel(dm) 1 0.005702 0.007284 0.008817 0.23% StateData::define() 4 0.005689 0.007267 0.008793 0.23% Other 256 0.01656 0.02516 0.03242 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8650 KiB 8661 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6793 KiB 6797 KiB 6806 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7136 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4578 KiB 4592 KiB 4612 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 229 KiB 252 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2822 KiB 2823 KiB 2825 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 227 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 44 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized