Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:24 UTC on 2025-04-08. Successfully read inputs file ... Castro git describe: 25.04 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01664472 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360439468 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.351182278 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.351669392 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.369437668 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.322449321 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.301351936 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301760285 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301320427 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.304311131 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300910384 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007592273 seconds Ending run at 05:19:28 UTC on 2025-04-08. Run time = 3.481499644 Run time without initialization = 3.27805463 Average number of zones advanced per microsecond: 0.800 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4732 ... 3.4779 ... 3.4815 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1481 2.2945 2.3793 68.34% Gravity::make_radial_gravity() 21 0.2946 0.3036 0.3148 9.04% check_for_negative_density() 10 0.03528 0.1215 0.2729 7.84% Castro::initData() 1 0.03724 0.08006 0.1192 3.42% Castro::estTimeStep() 21 0.02328 0.06879 0.1144 3.29% amrex::Copy() 193 0.06457 0.07496 0.08005 2.30% FabArray::ParallelCopy_finish() 41 0.04135 0.04945 0.07099 2.04% FabArray::setVal() 143 0.05327 0.06597 0.0704 2.02% Castro::normalize_species() 62 0.04535 0.04701 0.04931 1.42% Castro::reset_internal_energy(Fab) 1008 0.04538 0.04698 0.04795 1.38% FabArray::ParallelCopy_nowait() 41 0.03428 0.03922 0.04133 1.19% StateData::FillBoundary(geom) 41 0.02856 0.03282 0.03545 1.02% FillPatchIterator::Initialize 41 0.02938 0.03259 0.03458 0.99% Gravity::interpolate_monopole_grav() 21 0.02659 0.02713 0.02758 0.79% Castro::construct_new_gravity_source() 10 0.02231 0.02391 0.02584 0.74% Castro::initialize_do_advance() 10 0.01503 0.0168 0.01938 0.56% Castro::computeTemp() 63 0.01828 0.01845 0.01889 0.54% VisMF::Write(FabArray) 2 0.009577 0.01056 0.01402 0.40% Castro::initialize_advance() 10 0.009784 0.01154 0.01363 0.39% FabArray::Saxpy() 20 0.01068 0.01156 0.01242 0.36% Castro::initMFs() 1 0.00913 0.01055 0.01204 0.35% Amr::writePlotFile() 2 0.007582 0.01102 0.01196 0.34% MultiFab::contains_nan() 20 0.0106 0.0109 0.01142 0.33% StateData::define() 4 0.006323 0.008811 0.01105 0.32% FabArray::setDomainBndry() 41 0.007646 0.009451 0.01032 0.30% Castro::construct_old_gravity_source() 10 0.005679 0.009266 0.01007 0.29% Castro::construct_new_source() 50 0.005046 0.005683 0.005888 0.17% Gravity::get_new_grav_vector() 11 0.003726 0.004326 0.005678 0.16% main() 1 0.00361 0.004594 0.00498 0.14% Amr::coarseTimeStep() 10 0.001664 0.002131 0.002844 0.08% Gravity::get_old_grav_vector() 10 0.001606 0.002044 0.00249 0.07% AmrLevel::FillPatch() 41 0.0008335 0.001355 0.001836 0.05% Castro::finalize_do_advance() 10 0.0006148 0.001199 0.001565 0.04% Amr::timeStep() 10 0.0001338 0.0001859 0.0004217 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002848 0.0002983 0.0003072 0.01% Castro::clean_state() 62 0.0001465 0.0001783 0.0001986 0.01% Castro::do_advance_ctu() 10 0.0001517 0.0001709 0.0001922 0.01% Amr::defBaseLevel() 1 4.132e-05 6.7e-05 0.0001307 0.00% StateDataPhysBCFunct::() 41 9.761e-05 0.00011 0.0001219 0.00% FillPatchIterator::FillFromLevel0() 41 9.073e-05 0.0001023 0.0001152 0.00% Castro::Castro() 1 5.485e-05 7.426e-05 0.0001043 0.00% Castro::do_old_sources() 10 7.817e-05 8.761e-05 9.455e-05 0.00% FabArray::ParallelCopy() 41 8.671e-05 8.905e-05 9.133e-05 0.00% Castro::construct_old_source() 50 4.953e-05 6.427e-05 8.013e-05 0.00% Amr::FinalizeInit() 1 4.313e-06 1.447e-05 7.904e-05 0.00% FillPatchSingleLevel 41 5.808e-05 6.407e-05 6.963e-05 0.00% Castro::do_new_sources() 10 5.407e-05 5.843e-05 6.45e-05 0.00% Castro::advance() 10 3.956e-05 4.569e-05 5.136e-05 0.00% Castro::construct_old_gravity() 10 3.839e-05 4.188e-05 4.792e-05 0.00% Castro::apply_source_to_state() 20 3.655e-05 4.37e-05 4.681e-05 0.00% Castro::subcycle_advance_ctu() 10 3.628e-05 4.139e-05 4.54e-05 0.00% Castro::construct_new_gravity() 10 3.133e-05 3.429e-05 3.862e-05 0.00% Castro::expand_state() 10 2.105e-05 2.553e-05 3.007e-05 0.00% Castro::check_for_nan() 20 2.481e-05 2.732e-05 2.841e-05 0.00% Castro::post_init() 1 1.455e-05 1.731e-05 2.514e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.867e-06 1.477e-05 2.128e-05 0.00% Castro::post_timestep() 10 1.444e-05 1.595e-05 1.841e-05 0.00% Castro::computeNewDt() 9 1.013e-05 1.092e-05 1.274e-05 0.00% Amr::InitializeInit() 1 2.85e-06 3.914e-06 8.259e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.139e-06 5.33e-06 6.873e-06 0.00% Castro::computeInitialDt() 2 3.978e-06 4.255e-06 4.482e-06 0.00% Amr::init() 1 1.994e-06 2.386e-06 2.699e-06 0.00% Amr::initialInit() 1 1.659e-06 1.976e-06 2.21e-06 0.00% Other 255 0.01111 0.01722 0.0224 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.473 3.478 3.482 100.00% Amr::coarseTimeStep() 10 3.266 3.266 3.266 93.80% Amr::timeStep() 10 3.253 3.254 3.254 93.47% Castro::advance() 10 3.237 3.238 3.238 93.01% Castro::subcycle_advance_ctu() 10 3.164 3.166 3.169 91.02% Castro::do_advance_ctu() 10 3.164 3.166 3.169 91.02% Castro::construct_ctu_hydro_source() 10 2.436 2.439 2.445 70.24% Gravity::make_radial_gravity() 21 0.3104 0.3197 0.3292 9.46% check_for_negative_density() 10 0.03528 0.1215 0.2729 7.84% Gravity::get_new_grav_vector() 11 0.2136 0.2158 0.2181 6.26% Amr::init() 1 0.196 0.1997 0.2031 5.83% AmrLevel::FillPatch() 41 0.1836 0.1944 0.1993 5.72% Castro::construct_new_gravity() 10 0.1901 0.1922 0.1942 5.58% Castro::construct_old_gravity() 10 0.1819 0.1855 0.194 5.57% Gravity::get_old_grav_vector() 10 0.1812 0.1849 0.1934 5.56% Amr::initialInit() 1 0.1794 0.183 0.1864 5.35% FillPatchIterator::Initialize 41 0.1551 0.164 0.1722 4.95% Castro::initialize_do_advance() 10 0.1546 0.1612 0.1645 4.73% Amr::InitializeInit() 1 0.06726 0.1123 0.1527 4.39% Amr::defBaseLevel() 1 0.06725 0.1123 0.1527 4.39% FillPatchIterator::FillFromLevel0() 41 0.1169 0.122 0.1343 3.86% FillPatchSingleLevel 41 0.1168 0.1219 0.1342 3.85% Castro::initData() 1 0.04071 0.08396 0.123 3.53% Castro::clean_state() 62 0.1152 0.118 0.1221 3.51% Amr::FinalizeInit() 1 0.02774 0.07069 0.1174 3.37% Castro::estTimeStep() 21 0.02328 0.06879 0.1144 3.29% Castro::expand_state() 10 0.1004 0.108 0.1107 3.18% FabArray::ParallelCopy() 41 0.0814 0.08886 0.1055 3.03% Castro::do_old_sources() 10 0.09004 0.09297 0.09643 2.77% Castro::computeInitialDt() 2 0.002203 0.04528 0.0921 2.65% amrex::Copy() 193 0.06457 0.07496 0.08005 2.30% FabArray::ParallelCopy_finish() 41 0.04135 0.04945 0.07099 2.04% FabArray::setVal() 143 0.05327 0.06597 0.0704 2.02% Castro::initialize_advance() 10 0.06499 0.06857 0.07031 2.02% Castro::computeTemp() 63 0.06395 0.06573 0.06715 1.93% Castro::do_new_sources() 10 0.05642 0.06417 0.06597 1.89% Castro::normalize_species() 62 0.04535 0.04701 0.04931 1.42% Castro::reset_internal_energy(MultiFab) 63 0.04567 0.04728 0.04826 1.39% Castro::reset_internal_energy(Fab) 1008 0.04538 0.04698 0.04795 1.38% FabArray::ParallelCopy_nowait() 41 0.03438 0.03932 0.04142 1.19% StateDataPhysBCFunct::() 41 0.02868 0.03293 0.03557 1.02% StateData::FillBoundary(geom) 41 0.02856 0.03282 0.03545 1.02% Castro::construct_new_source() 50 0.02735 0.02959 0.0313 0.90% Gravity::interpolate_monopole_grav() 21 0.02659 0.02713 0.02758 0.79% Castro::construct_new_gravity_source() 10 0.02231 0.02391 0.02584 0.74% Castro::post_init() 1 0.02458 0.02481 0.02507 0.72% Amr::writePlotFile() 2 0.0243 0.02444 0.02461 0.71% Castro::finalize_do_advance() 10 0.01418 0.01623 0.02387 0.69% Castro::Castro() 1 0.01345 0.01567 0.01792 0.51% Castro::post_timestep() 10 0.01576 0.01603 0.01662 0.48% VisMF::Write(FabArray) 2 0.009577 0.01056 0.01402 0.40% Castro::apply_source_to_state() 20 0.01073 0.0116 0.01247 0.36% FabArray::Saxpy() 20 0.01068 0.01156 0.01242 0.36% Castro::initMFs() 1 0.00913 0.01055 0.01204 0.35% Castro::check_for_nan() 20 0.01063 0.01093 0.01145 0.33% MultiFab::contains_nan() 20 0.0106 0.0109 0.01142 0.33% AmrLevel::AmrLevel(dm) 1 0.006333 0.008825 0.01107 0.32% StateData::define() 4 0.006323 0.008811 0.01105 0.32% FabArray::setDomainBndry() 41 0.007646 0.009451 0.01032 0.30% Castro::construct_old_source() 50 0.005728 0.00933 0.01014 0.29% Castro::construct_old_gravity_source() 10 0.005679 0.009266 0.01007 0.29% Castro::computeNewDt() 9 0.008466 0.008487 0.008505 0.24% DistributionMapping::SFCProcessorMapDoIt() 1 3.831e-05 0.003763 0.007151 0.21% Other 255 0.01552 0.02213 0.02808 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 46 B 87 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8632 KiB 8647 KiB 8653 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6718 KiB 6723 KiB 6732 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7125 KiB 7132 KiB 7138 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4541 KiB 4547 KiB 4553 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 195 KiB 210 KiB 215 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2789 KiB 2792 KiB 2795 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 234 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 39 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2022 KiB 2025 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized