Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:16 UTC on 2025-04-09. Successfully read inputs file ... Castro git describe: 25.04 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01555327 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.363322597 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.364820887 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.343225004 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.389302951 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.351899563 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.388401198 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.337168271 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.343763723 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.333755836 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.351439078 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00943644 seconds Ending run at 05:20:20 UTC on 2025-04-09. Run time = 3.7694584 Run time without initialization = 3.582114151 Average number of zones advanced per microsecond: 0.732 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.7678 ... 3.7684 ... 3.7695 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2775 2.3913 2.5157 66.74% check_for_negative_density() 10 0.1021 0.2216 0.3339 8.86% Gravity::make_radial_gravity() 21 0.3015 0.3109 0.3188 8.46% Castro::estTimeStep() 21 0.03687 0.08769 0.1331 3.53% Castro::initData() 1 0.03827 0.07624 0.12 3.18% amrex::Copy() 193 0.08653 0.09071 0.09802 2.60% FabArray::setVal() 143 0.07127 0.07749 0.08493 2.25% FabArray::ParallelCopy_finish() 41 0.05382 0.06262 0.07186 1.91% Castro::reset_internal_energy(Fab) 1008 0.0444 0.04864 0.05233 1.39% FabArray::ParallelCopy_nowait() 41 0.0472 0.04858 0.04979 1.32% Castro::normalize_species() 62 0.04647 0.04751 0.04878 1.29% StateData::FillBoundary(geom) 41 0.03339 0.03628 0.04139 1.10% FillPatchIterator::Initialize 41 0.03237 0.03651 0.03869 1.03% Castro::construct_new_gravity_source() 10 0.02537 0.02788 0.03027 0.80% Gravity::interpolate_monopole_grav() 21 0.02713 0.02753 0.02788 0.74% Castro::computeTemp() 63 0.01828 0.0193 0.02027 0.54% Castro::initialize_do_advance() 10 0.01672 0.01886 0.02012 0.53% FabArray::Saxpy() 20 0.0142 0.01535 0.0164 0.44% MultiFab::contains_nan() 20 0.01155 0.01305 0.01477 0.39% FabArray::setDomainBndry() 41 0.01006 0.01242 0.01467 0.39% VisMF::Write(FabArray) 2 0.00986 0.01054 0.01367 0.36% Castro::initialize_advance() 10 0.01104 0.01195 0.01356 0.36% Amr::writePlotFile() 2 0.008217 0.01136 0.01244 0.33% Castro::construct_old_gravity_source() 10 0.009857 0.01084 0.01163 0.31% Castro::initMFs() 1 0.006815 0.007421 0.008061 0.21% Castro::construct_new_source() 50 0.006457 0.006675 0.00684 0.18% Gravity::get_new_grav_vector() 11 0.003739 0.004505 0.005935 0.16% main() 1 0.004132 0.004537 0.005126 0.14% Amr::coarseTimeStep() 10 0.001906 0.003055 0.004086 0.11% Gravity::get_old_grav_vector() 10 0.001877 0.002414 0.002871 0.08% Castro::finalize_do_advance() 10 0.001348 0.00149 0.001949 0.05% AmrLevel::FillPatch() 41 0.001161 0.001307 0.001435 0.04% Amr::timeStep() 10 0.0001696 0.0002219 0.0004288 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002854 0.0003272 0.0003869 0.01% Castro::do_advance_ctu() 10 0.0001748 0.0002032 0.0002633 0.01% Castro::clean_state() 62 0.0001586 0.000201 0.0002518 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001157 0.0001287 0.0001449 0.00% StateDataPhysBCFunct::() 41 0.0001136 0.0001285 0.0001449 0.00% Castro::do_old_sources() 10 9.469e-05 0.000115 0.0001299 0.00% FabArray::ParallelCopy() 41 9.844e-05 0.0001105 0.0001295 0.00% Amr::FinalizeInit() 1 4.677e-06 1.903e-05 0.0001133 0.00% Castro::construct_old_source() 50 6.176e-05 8.649e-05 9.712e-05 0.00% Castro::do_new_sources() 10 5.758e-05 7.271e-05 9.149e-05 0.00% FillPatchSingleLevel 41 7.118e-05 7.95e-05 8.931e-05 0.00% Castro::Castro() 1 5.921e-05 7.03e-05 8.434e-05 0.00% Castro::advance() 10 5.077e-05 6.321e-05 7.392e-05 0.00% Castro::construct_old_gravity() 10 4.73e-05 5.42e-05 6.556e-05 0.00% Castro::apply_source_to_state() 20 4.931e-05 5.724e-05 6.492e-05 0.00% Castro::subcycle_advance_ctu() 10 5.395e-05 6.085e-05 6.466e-05 0.00% Castro::construct_new_gravity() 10 3.1e-05 4.289e-05 5.851e-05 0.00% Amr::defBaseLevel() 1 4.52e-05 5.139e-05 5.757e-05 0.00% Castro::check_for_nan() 20 2.972e-05 3.401e-05 4.468e-05 0.00% Castro::expand_state() 10 2.611e-05 3.078e-05 3.367e-05 0.00% Castro::post_init() 1 1.589e-05 1.947e-05 2.566e-05 0.00% Castro::post_timestep() 10 1.859e-05 2.043e-05 2.194e-05 0.00% Castro::computeNewDt() 9 1.007e-05 1.328e-05 1.585e-05 0.00% Amr::InitializeInit() 1 2.715e-06 3.688e-06 5.582e-06 0.00% Castro::computeInitialDt() 2 3.597e-06 4.292e-06 4.948e-06 0.00% Amr::init() 1 1.8e-06 2.363e-06 3.457e-06 0.00% Amr::initialInit() 1 1.281e-06 2.062e-06 2.852e-06 0.00% Other 261 0.01693 0.01975 0.02189 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.768 3.768 3.769 100.00% Amr::coarseTimeStep() 10 3.568 3.568 3.568 94.64% Amr::timeStep() 10 3.553 3.555 3.556 94.33% Castro::advance() 10 3.537 3.538 3.539 93.89% Castro::subcycle_advance_ctu() 10 3.451 3.457 3.463 91.86% Castro::do_advance_ctu() 10 3.451 3.457 3.463 91.86% Castro::construct_ctu_hydro_source() 10 2.63 2.636 2.643 70.12% Gravity::make_radial_gravity() 21 0.3214 0.3301 0.3391 9.00% check_for_negative_density() 10 0.1021 0.2216 0.3339 8.86% AmrLevel::FillPatch() 41 0.2219 0.2348 0.2457 6.52% Gravity::get_new_grav_vector() 11 0.2228 0.2262 0.2288 6.07% FillPatchIterator::Initialize 41 0.1876 0.197 0.2061 5.47% Castro::construct_new_gravity() 10 0.1998 0.2025 0.2047 5.43% Castro::construct_old_gravity() 10 0.1909 0.1974 0.2025 5.37% Gravity::get_old_grav_vector() 10 0.1901 0.1966 0.2019 5.36% Castro::initialize_do_advance() 10 0.1791 0.1876 0.195 5.17% Amr::init() 1 0.1862 0.1865 0.1872 4.97% Amr::initialInit() 1 0.1704 0.1708 0.1716 4.55% FillPatchIterator::FillFromLevel0() 41 0.1424 0.148 0.1547 4.10% FillPatchSingleLevel 41 0.1423 0.1479 0.1545 4.10% Amr::InitializeInit() 1 0.05957 0.09814 0.1426 3.78% Amr::defBaseLevel() 1 0.05957 0.09814 0.1426 3.78% Castro::expand_state() 10 0.1212 0.1293 0.1371 3.64% Castro::estTimeStep() 21 0.03687 0.08769 0.1331 3.53% Castro::clean_state() 62 0.116 0.1217 0.1267 3.36% Castro::initData() 1 0.04231 0.08011 0.1238 3.28% FabArray::ParallelCopy() 41 0.1037 0.1114 0.1195 3.17% Castro::do_old_sources() 10 0.1023 0.1085 0.1137 3.02% Amr::FinalizeInit() 1 0.02803 0.07271 0.1111 2.95% amrex::Copy() 193 0.08653 0.09071 0.09802 2.60% Castro::computeInitialDt() 2 0.002255 0.04701 0.08536 2.26% FabArray::setVal() 143 0.07127 0.07749 0.08493 2.25% Castro::initialize_advance() 10 0.07097 0.07686 0.08297 2.20% Castro::do_new_sources() 10 0.06806 0.0741 0.08088 2.15% Castro::computeTemp() 63 0.06297 0.06826 0.07298 1.94% FabArray::ParallelCopy_finish() 41 0.05382 0.06262 0.07186 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04469 0.04896 0.05271 1.40% Castro::reset_internal_energy(Fab) 1008 0.0444 0.04864 0.05233 1.39% FabArray::ParallelCopy_nowait() 41 0.0473 0.04869 0.04989 1.32% Castro::normalize_species() 62 0.04647 0.04751 0.04878 1.29% StateDataPhysBCFunct::() 41 0.03354 0.03641 0.04151 1.10% StateData::FillBoundary(geom) 41 0.03339 0.03628 0.04139 1.10% Castro::finalize_do_advance() 10 0.02565 0.03327 0.04049 1.07% Castro::construct_new_source() 50 0.03221 0.03456 0.03705 0.98% Castro::construct_new_gravity_source() 10 0.02537 0.02788 0.03027 0.80% Gravity::interpolate_monopole_grav() 21 0.02713 0.02753 0.02788 0.74% Amr::writePlotFile() 2 0.02507 0.02516 0.02537 0.67% Castro::post_init() 1 0.02476 0.02504 0.0252 0.67% Castro::post_timestep() 10 0.01556 0.01618 0.01677 0.44% Castro::apply_source_to_state() 20 0.01426 0.01541 0.01647 0.44% FabArray::Saxpy() 20 0.0142 0.01535 0.0164 0.44% Castro::check_for_nan() 20 0.01158 0.01308 0.01481 0.39% MultiFab::contains_nan() 20 0.01155 0.01305 0.01477 0.39% FabArray::setDomainBndry() 41 0.01006 0.01242 0.01467 0.39% VisMF::Write(FabArray) 2 0.00986 0.01054 0.01367 0.36% Castro::Castro() 1 0.01006 0.01152 0.01244 0.33% Castro::construct_old_source() 50 0.009919 0.01093 0.01172 0.31% Castro::construct_old_gravity_source() 10 0.009857 0.01084 0.01163 0.31% Castro::computeNewDt() 9 0.008894 0.008917 0.008943 0.24% Castro::initMFs() 1 0.006815 0.007421 0.008061 0.21% Other 261 0.02792 0.03202 0.03599 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8672 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6775 KiB 6782 KiB 6784 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4574 KiB 4582 KiB 4587 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 221 KiB 233 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 217 KiB 223 KiB 229 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 45 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 67 KiB 68 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized