Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:21:18 UTC on 2025-04-10. Successfully read inputs file ... Castro git describe: 25.04-3-g0c748eb69 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-1-g59d2f09f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014358152 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344112987 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338008864 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319689869 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.324809017 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.38269783 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310505396 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305183261 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298356812 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301984738 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.312221808 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008314356 seconds Ending run at 05:21:22 UTC on 2025-04-10. Run time = 3.429931775 Run time without initialization = 3.250478939 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4290 ... 3.4294 ... 3.4300 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1845 2.2213 2.3153 67.50% Gravity::make_radial_gravity() 21 0.3149 0.3208 0.3347 9.76% check_for_negative_density() 10 0.02844 0.1259 0.1643 4.79% Castro::initData() 1 0.0373 0.07312 0.1158 3.38% Castro::estTimeStep() 21 0.03153 0.07323 0.111 3.24% FabArray::ParallelCopy_finish() 41 0.04654 0.06386 0.1004 2.93% amrex::Copy() 193 0.06649 0.07999 0.09251 2.70% FabArray::setVal() 143 0.05701 0.06659 0.07361 2.15% Castro::reset_internal_energy(Fab) 1008 0.04316 0.0463 0.04938 1.44% Castro::normalize_species() 62 0.0456 0.04651 0.04833 1.41% FabArray::ParallelCopy_nowait() 41 0.03484 0.04027 0.04242 1.24% StateData::FillBoundary(geom) 41 0.0297 0.03346 0.03829 1.12% FillPatchIterator::Initialize 41 0.02778 0.03267 0.03514 1.02% Gravity::interpolate_monopole_grav() 21 0.02709 0.02761 0.02897 0.84% Castro::construct_new_gravity_source() 10 0.0223 0.02378 0.02663 0.78% Castro::computeTemp() 63 0.01754 0.01823 0.01948 0.57% Castro::initialize_do_advance() 10 0.01174 0.01642 0.01789 0.52% Castro::initialize_advance() 10 0.00539 0.01073 0.01354 0.39% FabArray::Saxpy() 20 0.01025 0.01202 0.01344 0.39% Amr::writePlotFile() 2 0.008091 0.0108 0.01303 0.38% MultiFab::contains_nan() 20 0.01015 0.01114 0.01227 0.36% VisMF::Write(FabArray) 2 0.008599 0.009613 0.01206 0.35% FabArray::setDomainBndry() 41 0.008159 0.00975 0.01091 0.32% Castro::construct_old_gravity_source() 10 0.006496 0.00877 0.009466 0.28% Castro::initMFs() 1 0.006532 0.00704 0.008236 0.24% Castro::construct_new_source() 50 0.005698 0.005997 0.00637 0.19% main() 1 0.003611 0.003958 0.004147 0.12% Gravity::get_new_grav_vector() 11 0.00292 0.003461 0.003755 0.11% Gravity::get_old_grav_vector() 10 0.001779 0.00203 0.002242 0.07% Amr::coarseTimeStep() 10 0.001159 0.001552 0.00208 0.06% Castro::finalize_do_advance() 10 0.000545 0.00112 0.001258 0.04% AmrLevel::FillPatch() 41 0.0007205 0.001001 0.001081 0.03% Amr::timeStep() 10 0.0001369 0.0001923 0.0004048 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002836 0.000314 0.0003536 0.01% Castro::clean_state() 62 0.0001433 0.0001599 0.0001791 0.01% Castro::do_advance_ctu() 10 0.0001456 0.000158 0.0001694 0.00% StateDataPhysBCFunct::() 41 0.0001002 0.0001095 0.0001207 0.00% FillPatchIterator::FillFromLevel0() 41 9.9e-05 0.0001058 0.000113 0.00% FabArray::ParallelCopy() 41 8.331e-05 9.293e-05 0.0001016 0.00% Castro::do_old_sources() 10 7.452e-05 8.83e-05 9.665e-05 0.00% Castro::Castro() 1 4.429e-05 6.961e-05 8.423e-05 0.00% Castro::construct_old_source() 50 4.996e-05 6.543e-05 7.846e-05 0.00% FillPatchSingleLevel 41 5.943e-05 6.48e-05 7.297e-05 0.00% Castro::do_new_sources() 10 5.115e-05 6.047e-05 7.02e-05 0.00% Amr::FinalizeInit() 1 3.362e-06 1.22e-05 6.748e-05 0.00% Castro::advance() 10 4.754e-05 5.383e-05 6.181e-05 0.00% Castro::apply_source_to_state() 20 4.549e-05 5.029e-05 6.026e-05 0.00% Castro::subcycle_advance_ctu() 10 4.424e-05 4.978e-05 5.339e-05 0.00% Amr::defBaseLevel() 1 4.188e-05 4.641e-05 5.201e-05 0.00% Castro::construct_old_gravity() 10 3.123e-05 3.692e-05 4.575e-05 0.00% Castro::construct_new_gravity() 10 2.941e-05 3.274e-05 3.986e-05 0.00% Castro::check_for_nan() 20 2.551e-05 2.807e-05 3.628e-05 0.00% Castro::post_timestep() 10 1.346e-05 1.928e-05 3.593e-05 0.00% Castro::expand_state() 10 2.163e-05 2.556e-05 2.867e-05 0.00% Castro::post_init() 1 1.425e-05 1.551e-05 1.83e-05 0.00% Castro::computeNewDt() 9 9.682e-06 1.049e-05 1.184e-05 0.00% Amr::InitializeInit() 1 2.535e-06 3.405e-06 5.794e-06 0.00% Castro::computeInitialDt() 2 3.282e-06 3.918e-06 4.583e-06 0.00% Amr::init() 1 1.666e-06 2.294e-06 2.925e-06 0.00% Amr::initialInit() 1 1.412e-06 1.825e-06 2.345e-06 0.00% Other 261 0.01606 0.01852 0.02093 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.429 3.429 3.43 100.00% Amr::coarseTimeStep() 10 3.238 3.238 3.238 94.41% Amr::timeStep() 10 3.226 3.226 3.226 94.07% Castro::advance() 10 3.209 3.21 3.21 93.60% Castro::subcycle_advance_ctu() 10 3.132 3.138 3.153 91.92% Castro::do_advance_ctu() 10 3.132 3.138 3.153 91.92% Castro::construct_ctu_hydro_source() 10 2.366 2.369 2.371 69.14% Gravity::make_radial_gravity() 21 0.3311 0.3369 0.348 10.14% AmrLevel::FillPatch() 41 0.1923 0.2115 0.2265 6.60% Castro::construct_old_gravity() 10 0.2057 0.2101 0.2202 6.42% Gravity::get_old_grav_vector() 10 0.2051 0.2095 0.2195 6.40% Gravity::get_new_grav_vector() 11 0.212 0.2135 0.2153 6.28% FillPatchIterator::Initialize 41 0.1627 0.1805 0.2019 5.89% Castro::construct_new_gravity() 10 0.19 0.1912 0.1926 5.62% Amr::init() 1 0.1783 0.1787 0.1793 5.23% Castro::initialize_do_advance() 10 0.1592 0.1648 0.1696 4.94% FillPatchIterator::FillFromLevel0() 41 0.1244 0.1381 0.1654 4.82% FillPatchSingleLevel 41 0.1243 0.1379 0.1653 4.82% Amr::initialInit() 1 0.1635 0.1641 0.1648 4.80% check_for_negative_density() 10 0.02844 0.1259 0.1643 4.79% Amr::InitializeInit() 1 0.05798 0.09433 0.1377 4.01% Amr::defBaseLevel() 1 0.05797 0.09433 0.1377 4.01% FabArray::ParallelCopy() 41 0.08776 0.1043 0.1354 3.95% Castro::clean_state() 62 0.113 0.1167 0.1236 3.60% Castro::expand_state() 10 0.1051 0.1115 0.1219 3.56% Castro::initData() 1 0.04105 0.07692 0.1193 3.48% Castro::estTimeStep() 21 0.03153 0.07323 0.111 3.24% Castro::do_old_sources() 10 0.09703 0.1035 0.1075 3.13% Amr::FinalizeInit() 1 0.02615 0.06972 0.1056 3.08% FabArray::ParallelCopy_finish() 41 0.04654 0.06386 0.1004 2.93% amrex::Copy() 193 0.06649 0.07999 0.09251 2.70% Castro::computeInitialDt() 2 0.002132 0.04572 0.08169 2.38% Castro::initialize_advance() 10 0.05324 0.06833 0.07503 2.19% FabArray::setVal() 143 0.05701 0.06659 0.07361 2.15% Castro::computeTemp() 63 0.06101 0.06484 0.06922 2.02% Castro::do_new_sources() 10 0.05769 0.06245 0.06921 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04347 0.04661 0.04973 1.45% Castro::reset_internal_energy(Fab) 1008 0.04316 0.0463 0.04938 1.44% Castro::normalize_species() 62 0.0456 0.04651 0.04833 1.41% FabArray::ParallelCopy_nowait() 41 0.03493 0.04036 0.04251 1.24% StateDataPhysBCFunct::() 41 0.0298 0.03357 0.03842 1.12% StateData::FillBoundary(geom) 41 0.0297 0.03346 0.03829 1.12% Castro::construct_new_source() 50 0.02826 0.02977 0.033 0.96% Gravity::interpolate_monopole_grav() 21 0.02709 0.02761 0.02897 0.84% Castro::construct_new_gravity_source() 10 0.0223 0.02378 0.02663 0.78% Castro::post_init() 1 0.02326 0.0235 0.02364 0.69% Amr::writePlotFile() 2 0.02291 0.02307 0.02346 0.68% Castro::finalize_do_advance() 10 0.01292 0.01925 0.02332 0.68% Castro::post_timestep() 10 0.01524 0.01594 0.01645 0.48% Castro::apply_source_to_state() 20 0.0103 0.01207 0.01349 0.39% FabArray::Saxpy() 20 0.01025 0.01202 0.01344 0.39% Castro::check_for_nan() 20 0.01017 0.01117 0.01229 0.36% MultiFab::contains_nan() 20 0.01015 0.01114 0.01227 0.36% VisMF::Write(FabArray) 2 0.008599 0.009613 0.01206 0.35% Castro::Castro() 1 0.01036 0.01099 0.01185 0.35% FabArray::setDomainBndry() 41 0.008159 0.00975 0.01091 0.32% Castro::construct_old_source() 50 0.006546 0.008835 0.009535 0.28% Castro::construct_old_gravity_source() 10 0.006496 0.00877 0.009466 0.28% Castro::computeNewDt() 9 0.009353 0.009389 0.00942 0.27% Castro::initMFs() 1 0.006532 0.00704 0.008236 0.24% Other 261 0.02616 0.02975 0.0335 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6759 KiB 6764 KiB 6768 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4562 KiB 4572 KiB 4594 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 228 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2804 KiB 2807 KiB 2808 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 246 KiB 250 KiB 259 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 44 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 76 KiB 78 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized