Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:36 UTC on 2025-04-11. Successfully read inputs file ... Castro git describe: 25.04-6-g4f98ff10d AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-1-g59d2f09f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015269163 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.362094892 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329815551 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.32663006 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32208097 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37747438 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.301856945 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295070498 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295375044 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29637699 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296835962 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007507007 seconds Ending run at 05:19:39 UTC on 2025-04-11. Run time = 3.399733901 Run time without initialization = 3.215502035 Average number of zones advanced per microsecond: 0.815 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3987 ... 3.3993 ... 3.3998 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1236 2.2276 2.2663 66.66% Gravity::make_radial_gravity() 21 0.2843 0.3013 0.3223 9.48% check_for_negative_density() 10 0.0548 0.09439 0.2008 5.90% Castro::initData() 1 0.03739 0.07356 0.1183 3.48% Castro::estTimeStep() 21 0.02364 0.07378 0.1131 3.33% amrex::Copy() 193 0.07116 0.08236 0.09432 2.77% FabArray::ParallelCopy_finish() 41 0.03951 0.0643 0.08781 2.58% FabArray::setVal() 143 0.06328 0.07008 0.07527 2.21% Castro::reset_internal_energy(Fab) 1008 0.04494 0.04681 0.04925 1.45% Castro::normalize_species() 62 0.04497 0.04677 0.04857 1.43% FabArray::ParallelCopy_nowait() 41 0.03587 0.04155 0.04368 1.28% FillPatchIterator::Initialize 41 0.02843 0.03376 0.03955 1.16% StateData::FillBoundary(geom) 41 0.0288 0.03261 0.03555 1.05% Gravity::interpolate_monopole_grav() 21 0.02634 0.02674 0.02701 0.79% Castro::construct_new_gravity_source() 10 0.02195 0.02402 0.02602 0.77% Castro::initialize_do_advance() 10 0.01186 0.01768 0.02488 0.73% Castro::computeTemp() 63 0.01777 0.0185 0.01911 0.56% Castro::initialize_advance() 10 0.01097 0.01239 0.01433 0.42% MultiFab::contains_nan() 20 0.011 0.01208 0.01408 0.41% FabArray::Saxpy() 20 0.01048 0.01235 0.01311 0.39% VisMF::Write(FabArray) 2 0.009238 0.009638 0.01178 0.35% FabArray::setDomainBndry() 41 0.007432 0.009984 0.01122 0.33% Amr::writePlotFile() 2 0.00846 0.0104 0.01094 0.32% Castro::construct_old_gravity_source() 10 0.006491 0.008954 0.009577 0.28% Castro::initMFs() 1 0.00643 0.006996 0.008541 0.25% Castro::construct_new_source() 50 0.005607 0.006314 0.006675 0.20% Gravity::get_new_grav_vector() 11 0.002824 0.003435 0.003929 0.12% main() 1 0.003759 0.003826 0.003911 0.12% Amr::coarseTimeStep() 10 0.001453 0.002402 0.003184 0.09% Gravity::get_old_grav_vector() 10 0.001492 0.002134 0.002646 0.08% Castro::finalize_do_advance() 10 0.0005447 0.001084 0.001195 0.04% AmrLevel::FillPatch() 41 0.0007386 0.0008144 0.0009009 0.03% Amr::timeStep() 10 0.000137 0.0001828 0.0003674 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002782 0.0003047 0.0003294 0.01% Castro::do_advance_ctu() 10 0.0001505 0.000166 0.0001896 0.01% Castro::clean_state() 62 0.0001379 0.0001577 0.0001679 0.00% StateDataPhysBCFunct::() 41 0.0001008 0.0001232 0.0001614 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001017 0.0001116 0.0001263 0.00% FabArray::ParallelCopy() 41 8.587e-05 9.56e-05 0.0001092 0.00% Castro::do_old_sources() 10 8.081e-05 9.424e-05 0.0001052 0.00% Castro::Castro() 1 4.574e-05 7.353e-05 9.272e-05 0.00% Amr::FinalizeInit() 1 3.576e-06 1.503e-05 8.147e-05 0.00% Castro::construct_old_source() 50 5.629e-05 6.45e-05 7.527e-05 0.00% FillPatchSingleLevel 41 6.476e-05 6.833e-05 7.42e-05 0.00% Castro::do_new_sources() 10 5.494e-05 6.241e-05 6.702e-05 0.00% Castro::subcycle_advance_ctu() 10 4.296e-05 4.99e-05 6.29e-05 0.00% Castro::construct_old_gravity() 10 3.988e-05 4.688e-05 6.14e-05 0.00% Castro::expand_state() 10 2.193e-05 3.144e-05 5.997e-05 0.00% Castro::advance() 10 4.724e-05 5.088e-05 5.526e-05 0.00% Castro::apply_source_to_state() 20 3.998e-05 4.588e-05 5.073e-05 0.00% Amr::defBaseLevel() 1 3.561e-05 3.937e-05 4.281e-05 0.00% Castro::construct_new_gravity() 10 3.063e-05 3.32e-05 4.058e-05 0.00% Castro::check_for_nan() 20 2.562e-05 2.956e-05 3.346e-05 0.00% Castro::post_timestep() 10 1.351e-05 1.659e-05 1.999e-05 0.00% Castro::post_init() 1 1.469e-05 1.712e-05 1.973e-05 0.00% Castro::computeNewDt() 9 9.353e-06 1.039e-05 1.306e-05 0.00% Amr::InitializeInit() 1 2.539e-06 3.767e-06 6.819e-06 0.00% Amr::init() 1 1.593e-06 2.546e-06 5.257e-06 0.00% Castro::computeInitialDt() 2 3.446e-06 3.917e-06 4.709e-06 0.00% Amr::initialInit() 1 1.727e-06 2.027e-06 2.311e-06 0.00% Other 261 0.01528 0.01875 0.02085 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.399 3.399 3.4 100.00% Amr::coarseTimeStep() 10 3.204 3.204 3.204 94.25% Amr::timeStep() 10 3.191 3.192 3.193 93.92% Castro::advance() 10 3.175 3.176 3.176 93.41% Castro::subcycle_advance_ctu() 10 3.096 3.099 3.105 91.33% Castro::do_advance_ctu() 10 3.096 3.099 3.105 91.33% Castro::construct_ctu_hydro_source() 10 2.342 2.344 2.346 69.01% Gravity::make_radial_gravity() 21 0.301 0.3177 0.3362 9.89% AmrLevel::FillPatch() 41 0.1999 0.2163 0.224 6.59% Castro::construct_old_gravity() 10 0.1802 0.1946 0.2111 6.21% Gravity::get_old_grav_vector() 10 0.1791 0.1938 0.2105 6.19% Gravity::get_new_grav_vector() 11 0.2067 0.2085 0.2095 6.16% check_for_negative_density() 10 0.0548 0.09439 0.2008 5.90% Castro::initialize_do_advance() 10 0.1688 0.1784 0.1906 5.61% FillPatchIterator::Initialize 41 0.1659 0.1827 0.1893 5.57% Castro::construct_new_gravity() 10 0.1842 0.1853 0.1859 5.47% Amr::init() 1 0.1827 0.1835 0.184 5.41% Amr::initialInit() 1 0.1673 0.1681 0.1691 4.97% FillPatchIterator::FillFromLevel0() 41 0.1159 0.139 0.153 4.50% FillPatchSingleLevel 41 0.1158 0.1388 0.1528 4.50% Amr::InitializeInit() 1 0.05878 0.09509 0.1406 4.13% Amr::defBaseLevel() 1 0.05878 0.09508 0.1406 4.13% Castro::expand_state() 10 0.112 0.1235 0.1348 3.97% FabArray::ParallelCopy() 41 0.08337 0.106 0.1239 3.64% Castro::initData() 1 0.04128 0.07751 0.1222 3.59% Castro::clean_state() 62 0.1133 0.1176 0.122 3.59% Castro::estTimeStep() 21 0.02364 0.07378 0.1131 3.33% Amr::FinalizeInit() 1 0.02695 0.07303 0.1097 3.23% Castro::do_old_sources() 10 0.09605 0.09838 0.101 2.97% amrex::Copy() 193 0.07116 0.08236 0.09432 2.77% FabArray::ParallelCopy_finish() 41 0.03951 0.0643 0.08781 2.58% Castro::computeInitialDt() 2 0.002209 0.04819 0.085 2.50% Castro::initialize_advance() 10 0.06646 0.07327 0.07598 2.23% FabArray::setVal() 143 0.06328 0.07008 0.07527 2.21% Castro::do_new_sources() 10 0.05715 0.06416 0.06951 2.04% Castro::computeTemp() 63 0.06299 0.06561 0.06866 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04522 0.04711 0.04955 1.46% Castro::reset_internal_energy(Fab) 1008 0.04494 0.04681 0.04925 1.45% Castro::normalize_species() 62 0.04497 0.04677 0.04857 1.43% FabArray::ParallelCopy_nowait() 41 0.03598 0.04164 0.04378 1.29% StateDataPhysBCFunct::() 41 0.0289 0.03274 0.03567 1.05% StateData::FillBoundary(geom) 41 0.0288 0.03261 0.03555 1.05% Castro::construct_new_source() 50 0.02756 0.03033 0.03264 0.96% Gravity::interpolate_monopole_grav() 21 0.02634 0.02674 0.02701 0.79% Castro::construct_new_gravity_source() 10 0.02195 0.02402 0.02602 0.77% Castro::post_init() 1 0.02392 0.02421 0.02487 0.73% Castro::finalize_do_advance() 10 0.01276 0.01807 0.02444 0.72% Amr::writePlotFile() 2 0.0224 0.02297 0.02316 0.68% Castro::post_timestep() 10 0.01553 0.01626 0.01703 0.50% Castro::check_for_nan() 20 0.01103 0.01211 0.01411 0.41% MultiFab::contains_nan() 20 0.011 0.01208 0.01408 0.41% Castro::apply_source_to_state() 20 0.01052 0.01239 0.01316 0.39% FabArray::Saxpy() 20 0.01048 0.01235 0.01311 0.39% Castro::Castro() 1 0.01034 0.01106 0.01199 0.35% VisMF::Write(FabArray) 2 0.009238 0.009638 0.01178 0.35% FabArray::setDomainBndry() 41 0.007432 0.009984 0.01122 0.33% Castro::construct_old_source() 50 0.006547 0.009019 0.009647 0.28% Castro::construct_old_gravity_source() 10 0.006491 0.008954 0.009577 0.28% Castro::computeNewDt() 9 0.008588 0.008617 0.008634 0.25% Castro::initMFs() 1 0.00643 0.006996 0.008541 0.25% Other 261 0.02545 0.03032 0.03391 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 37 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6746 KiB 6749 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4550 KiB 4554 KiB 4560 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 221 KiB 242 KiB 255 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2798 KiB 2801 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 238 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 49 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 73 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized