Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:14 UTC on 2025-04-14. Successfully read inputs file ... Castro git describe: 25.04-7-g5d64e9801 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-1-g59d2f09f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014380703 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.334365991 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337360309 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314842344 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312427517 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356322219 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308271285 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296550788 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299917884 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298444608 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30187932 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007488363 seconds Ending run at 05:19:18 UTC on 2025-04-14. Run time = 3.341808721 Run time without initialization = 3.172350393 Average number of zones advanced per microsecond: 0.826 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3415 ... 3.3417 ... 3.3418 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1841 2.2227 2.2802 68.23% Gravity::make_radial_gravity() 21 0.2855 0.2926 0.307 9.19% check_for_negative_density() 10 0.02256 0.09601 0.1383 4.14% Castro::initData() 1 0.03717 0.0728 0.1062 3.18% Castro::estTimeStep() 21 0.02431 0.06133 0.1003 3.00% amrex::Copy() 193 0.06391 0.07949 0.09317 2.79% FabArray::ParallelCopy_finish() 41 0.03519 0.04685 0.08673 2.60% FabArray::setVal() 143 0.05511 0.06595 0.07073 2.12% Castro::reset_internal_energy(Fab) 1008 0.04393 0.04579 0.04792 1.43% Castro::normalize_species() 62 0.04524 0.04656 0.04768 1.43% FabArray::ParallelCopy_nowait() 41 0.03565 0.04093 0.04273 1.28% StateData::FillBoundary(geom) 41 0.02914 0.0328 0.03989 1.19% FillPatchIterator::Initialize 41 0.02773 0.03216 0.03429 1.03% Gravity::interpolate_monopole_grav() 21 0.02641 0.02674 0.02694 0.81% Castro::construct_new_gravity_source() 10 0.02274 0.02421 0.02635 0.79% Castro::computeTemp() 63 0.0175 0.01812 0.01886 0.56% Castro::initialize_do_advance() 10 0.0118 0.01603 0.01782 0.53% Castro::initialize_advance() 10 0.005299 0.01069 0.01385 0.41% FabArray::Saxpy() 20 0.01048 0.01249 0.01358 0.41% VisMF::Write(FabArray) 2 0.009199 0.009712 0.01278 0.38% MultiFab::contains_nan() 20 0.01018 0.01115 0.01241 0.37% FabArray::setDomainBndry() 41 0.007503 0.009667 0.01078 0.32% Castro::construct_old_gravity_source() 10 0.007118 0.009716 0.01031 0.31% Amr::writePlotFile() 2 0.007386 0.009281 0.009653 0.29% Castro::initMFs() 1 0.00676 0.007515 0.007805 0.23% Castro::construct_new_source() 50 0.005635 0.006092 0.006455 0.19% main() 1 0.003655 0.003891 0.004005 0.12% Gravity::get_new_grav_vector() 11 0.002693 0.003519 0.003946 0.12% Gravity::get_old_grav_vector() 10 0.001568 0.002078 0.002456 0.07% Amr::coarseTimeStep() 10 0.0006076 0.001809 0.002396 0.07% Castro::finalize_do_advance() 10 0.000489 0.001087 0.001255 0.04% AmrLevel::FillPatch() 41 0.000717 0.001013 0.001147 0.03% Amr::timeStep() 10 0.0001525 0.0001862 0.0003516 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002768 0.0002911 0.0003096 0.01% Castro::do_advance_ctu() 10 0.0001411 0.0001655 0.0001949 0.01% Castro::clean_state() 62 0.0001519 0.0001659 0.0001773 0.01% FillPatchIterator::FillFromLevel0() 41 9.321e-05 0.0001077 0.0001429 0.00% StateDataPhysBCFunct::() 41 8.889e-05 0.0001024 0.0001301 0.00% Castro::do_old_sources() 10 7.871e-05 9.632e-05 0.0001154 0.00% FabArray::ParallelCopy() 41 8.589e-05 9.233e-05 0.0001019 0.00% Castro::Castro() 1 5.769e-05 7.497e-05 9.624e-05 0.00% Castro::construct_old_source() 50 4.975e-05 6.819e-05 8.472e-05 0.00% Amr::FinalizeInit() 1 3.09e-06 1.529e-05 8.402e-05 0.00% FillPatchSingleLevel 41 5.98e-05 6.651e-05 7.887e-05 0.00% Amr::defBaseLevel() 1 4.43e-05 6.213e-05 7.577e-05 0.00% Castro::do_new_sources() 10 5.385e-05 5.97e-05 6.585e-05 0.00% Castro::advance() 10 4.32e-05 5.347e-05 6.401e-05 0.00% Castro::apply_source_to_state() 20 3.955e-05 4.908e-05 5.491e-05 0.00% Castro::subcycle_advance_ctu() 10 4.495e-05 5.004e-05 5.458e-05 0.00% Castro::construct_old_gravity() 10 3.287e-05 4.156e-05 5.186e-05 0.00% Castro::construct_new_gravity() 10 2.736e-05 3.309e-05 4.183e-05 0.00% Castro::expand_state() 10 2.083e-05 2.601e-05 3.057e-05 0.00% Castro::check_for_nan() 20 2.528e-05 2.747e-05 2.961e-05 0.00% Castro::post_timestep() 10 1.501e-05 1.811e-05 2.559e-05 0.00% Castro::post_init() 1 1.373e-05 1.608e-05 1.967e-05 0.00% Castro::computeNewDt() 9 9.064e-06 1.081e-05 1.338e-05 0.00% Amr::InitializeInit() 1 2.74e-06 3.849e-06 7.283e-06 0.00% Amr::init() 1 1.784e-06 2.549e-06 5.375e-06 0.00% Castro::computeInitialDt() 2 3.63e-06 4.096e-06 4.992e-06 0.00% Amr::initialInit() 1 1.673e-06 2.111e-06 2.736e-06 0.00% Other 261 0.01549 0.01899 0.02043 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.342 3.342 3.342 100.00% Amr::coarseTimeStep() 10 3.161 3.161 3.161 94.59% Amr::timeStep() 10 3.149 3.15 3.151 94.28% Castro::advance() 10 3.133 3.133 3.134 93.77% Castro::subcycle_advance_ctu() 10 3.056 3.062 3.078 92.10% Castro::do_advance_ctu() 10 3.056 3.062 3.078 92.10% Castro::construct_ctu_hydro_source() 10 2.325 2.34 2.344 70.15% Gravity::make_radial_gravity() 21 0.302 0.309 0.3202 9.58% AmrLevel::FillPatch() 41 0.1787 0.196 0.2121 6.35% Gravity::get_new_grav_vector() 11 0.2038 0.2061 0.2084 6.24% Castro::construct_old_gravity() 10 0.1795 0.1836 0.1928 5.77% Gravity::get_old_grav_vector() 10 0.1787 0.1829 0.1921 5.75% FillPatchIterator::Initialize 41 0.1481 0.1629 0.1872 5.60% Castro::construct_new_gravity() 10 0.1827 0.184 0.1855 5.55% Amr::init() 1 0.1688 0.169 0.1691 5.06% Castro::initialize_do_advance() 10 0.1548 0.1609 0.1682 5.03% Amr::initialInit() 1 0.1543 0.155 0.1551 4.64% FillPatchIterator::FillFromLevel0() 41 0.1104 0.121 0.152 4.55% FillPatchSingleLevel 41 0.1103 0.1209 0.1519 4.54% check_for_negative_density() 10 0.02256 0.09601 0.1383 4.14% Amr::InitializeInit() 1 0.0595 0.09502 0.129 3.86% Amr::defBaseLevel() 1 0.0595 0.09502 0.129 3.86% FabArray::ParallelCopy() 41 0.07702 0.08796 0.1226 3.67% Castro::clean_state() 62 0.1123 0.116 0.1201 3.59% Castro::expand_state() 10 0.1002 0.1083 0.1193 3.57% Castro::initData() 1 0.04114 0.07657 0.1098 3.29% Castro::do_old_sources() 10 0.09065 0.09588 0.1078 3.23% Castro::estTimeStep() 21 0.02431 0.06133 0.1003 3.00% Amr::FinalizeInit() 1 0.02612 0.05993 0.09551 2.86% amrex::Copy() 193 0.06391 0.07949 0.09317 2.79% FabArray::ParallelCopy_finish() 41 0.03519 0.04685 0.08673 2.60% Castro::initialize_advance() 10 0.05148 0.06836 0.07363 2.20% Castro::computeInitialDt() 2 0.002076 0.03598 0.0715 2.14% FabArray::setVal() 143 0.05511 0.06595 0.07073 2.12% Castro::do_new_sources() 10 0.06047 0.06366 0.06934 2.07% Castro::computeTemp() 63 0.06178 0.0642 0.06708 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04421 0.04608 0.04823 1.44% Castro::reset_internal_energy(Fab) 1008 0.04393 0.04579 0.04792 1.43% Castro::normalize_species() 62 0.04524 0.04656 0.04768 1.43% FabArray::ParallelCopy_nowait() 41 0.03575 0.04102 0.04281 1.28% StateDataPhysBCFunct::() 41 0.02924 0.0329 0.04002 1.20% StateData::FillBoundary(geom) 41 0.02914 0.0328 0.03989 1.19% Castro::construct_new_source() 50 0.02873 0.0303 0.03277 0.98% Gravity::interpolate_monopole_grav() 21 0.02641 0.02674 0.02694 0.81% Castro::construct_new_gravity_source() 10 0.02274 0.02421 0.02635 0.79% Castro::post_init() 1 0.02293 0.02341 0.02358 0.71% Amr::writePlotFile() 2 0.02155 0.02165 0.0221 0.66% Castro::finalize_do_advance() 10 0.01226 0.01792 0.02156 0.65% Castro::post_timestep() 10 0.01549 0.01598 0.01686 0.50% Castro::apply_source_to_state() 20 0.01052 0.01254 0.01364 0.41% FabArray::Saxpy() 20 0.01048 0.01249 0.01358 0.41% VisMF::Write(FabArray) 2 0.009199 0.009712 0.01278 0.38% Castro::check_for_nan() 20 0.0102 0.01118 0.01244 0.37% Castro::Castro() 1 0.009587 0.01177 0.01244 0.37% MultiFab::contains_nan() 20 0.01018 0.01115 0.01241 0.37% FabArray::setDomainBndry() 41 0.007503 0.009667 0.01078 0.32% Castro::construct_old_source() 50 0.007167 0.009784 0.01037 0.31% Castro::construct_old_gravity_source() 10 0.007118 0.009716 0.01031 0.31% Castro::computeNewDt() 9 0.008507 0.008526 0.008554 0.26% Castro::initMFs() 1 0.00676 0.007515 0.007805 0.23% Other 261 0.02609 0.03046 0.03236 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 44 B 62 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6771 KiB 6775 KiB 6776 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4569 KiB 4577 KiB 4597 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 201 KiB 220 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2808 KiB 2812 KiB 2813 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 235 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized