Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:53 UTC on 2025-04-15. Successfully read inputs file ... Castro git describe: 25.04-7-g5d64e9801 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-1-g59d2f09f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014419255 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337761744 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335818093 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316216212 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314070553 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357234008 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305258175 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295089151 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297627158 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300421641 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302122096 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007484591 seconds Ending run at 05:18:56 UTC on 2025-04-15. Run time = 3.338148376 Run time without initialization = 3.174335895 Average number of zones advanced per microsecond: 0.826 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3367 ... 3.3376 ... 3.3383 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1880 2.2255 2.2780 68.24% Gravity::make_radial_gravity() 21 0.2913 0.3002 0.3102 9.29% check_for_negative_density() 10 0.02024 0.07603 0.1168 3.50% Castro::initData() 1 0.03701 0.06979 0.1006 3.01% Castro::estTimeStep() 21 0.02554 0.06202 0.0999 2.99% FabArray::ParallelCopy_finish() 41 0.0368 0.04773 0.08672 2.60% amrex::Copy() 193 0.06242 0.07732 0.08543 2.56% FabArray::setVal() 143 0.05659 0.06773 0.07308 2.19% Castro::normalize_species() 62 0.0455 0.05256 0.06523 1.95% Castro::reset_internal_energy(Fab) 1008 0.04137 0.04662 0.04911 1.47% FabArray::ParallelCopy_nowait() 41 0.03624 0.04071 0.04353 1.30% StateData::FillBoundary(geom) 41 0.0301 0.03232 0.03581 1.07% FillPatchIterator::Initialize 41 0.0283 0.03171 0.03355 1.01% Gravity::interpolate_monopole_grav() 21 0.02638 0.02665 0.02702 0.81% Castro::construct_new_gravity_source() 10 0.02262 0.02461 0.02684 0.80% Castro::computeTemp() 63 0.01744 0.0185 0.01947 0.58% Castro::initialize_do_advance() 10 0.01193 0.0166 0.01803 0.54% FabArray::Saxpy() 20 0.01032 0.01254 0.0137 0.41% Castro::initialize_advance() 10 0.005312 0.01074 0.01318 0.39% MultiFab::contains_nan() 20 0.01034 0.01162 0.01281 0.38% VisMF::Write(FabArray) 2 0.008766 0.009486 0.01192 0.36% Amr::writePlotFile() 2 0.00726 0.00984 0.01174 0.35% FabArray::setDomainBndry() 41 0.007683 0.009363 0.01142 0.34% Castro::construct_old_gravity_source() 10 0.007018 0.009532 0.01042 0.31% Castro::enforce_min_density() 62 0.005626 0.006073 0.006689 0.20% Castro::construct_new_source() 50 0.005679 0.006061 0.006316 0.19% Amr::coarseTimeStep() 10 0.001005 0.003724 0.006048 0.18% main() 1 0.003348 0.004191 0.004814 0.14% Gravity::get_new_grav_vector() 11 0.002663 0.003246 0.003839 0.12% Gravity::get_old_grav_vector() 10 0.001628 0.00212 0.002667 0.08% Castro::finalize_do_advance() 10 0.000565 0.001124 0.001274 0.04% AmrLevel::FillPatch() 41 0.0007605 0.0009546 0.001093 0.03% Amr::timeStep() 10 0.000138 0.0001891 0.0003882 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002801 0.000306 0.0003434 0.01% Castro::clean_state() 62 0.0001545 0.0001752 0.0002107 0.01% Castro::do_advance_ctu() 10 0.0001673 0.0001828 0.0001967 0.01% Castro::do_old_sources() 10 8.647e-05 0.000104 0.000138 0.00% FillPatchIterator::FillFromLevel0() 41 9.91e-05 0.0001097 0.000118 0.00% StateDataPhysBCFunct::() 41 9.936e-05 0.0001052 0.0001174 0.00% FabArray::ParallelCopy() 41 8.506e-05 9.583e-05 0.0001083 0.00% Castro::Castro() 1 8.177e-05 8.996e-05 9.851e-05 0.00% Amr::FinalizeInit() 1 3.593e-06 1.676e-05 9.464e-05 0.00% Castro::construct_old_source() 50 5.793e-05 7.397e-05 8.528e-05 0.00% Amr::defBaseLevel() 1 3.903e-05 5.609e-05 7.926e-05 0.00% FillPatchSingleLevel 41 6.346e-05 7.03e-05 7.605e-05 0.00% Castro::do_new_sources() 10 6.062e-05 6.509e-05 6.904e-05 0.00% Castro::advance() 10 4.51e-05 5.606e-05 6.579e-05 0.00% Castro::subcycle_advance_ctu() 10 4.146e-05 5.179e-05 5.923e-05 0.00% Castro::construct_old_gravity() 10 3.614e-05 4.437e-05 5.707e-05 0.00% Castro::apply_source_to_state() 20 3.951e-05 4.693e-05 5.567e-05 0.00% Castro::construct_new_gravity() 10 3.037e-05 3.65e-05 4.411e-05 0.00% Castro::expand_state() 10 2.35e-05 2.811e-05 3.496e-05 0.00% Castro::check_for_nan() 20 2.55e-05 2.93e-05 3.337e-05 0.00% Castro::post_init() 1 1.466e-05 1.57e-05 1.836e-05 0.00% Castro::post_timestep() 10 1.305e-05 1.572e-05 1.726e-05 0.00% Castro::computeNewDt() 9 8.805e-06 9.903e-06 1.114e-05 0.00% Amr::InitializeInit() 1 2.549e-06 4.295e-06 1.086e-05 0.00% Castro::computeInitialDt() 2 2.992e-06 3.497e-06 3.827e-06 0.00% Amr::init() 1 1.561e-06 1.971e-06 3.013e-06 0.00% Amr::initialInit() 1 1.533e-06 1.868e-06 2.755e-06 0.00% Other 200 0.01669 0.01838 0.01946 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.337 3.338 3.338 100.00% Amr::coarseTimeStep() 10 3.162 3.162 3.162 94.72% Amr::timeStep() 10 3.146 3.148 3.151 94.38% Castro::advance() 10 3.13 3.131 3.131 93.79% Castro::subcycle_advance_ctu() 10 3.05 3.057 3.073 92.05% Castro::do_advance_ctu() 10 3.05 3.057 3.073 92.05% Castro::construct_ctu_hydro_source() 10 2.32 2.324 2.327 69.71% Gravity::make_radial_gravity() 21 0.3063 0.3152 0.3226 9.66% AmrLevel::FillPatch() 41 0.1828 0.194 0.2162 6.48% Gravity::get_new_grav_vector() 11 0.2046 0.2082 0.2118 6.35% Castro::construct_old_gravity() 10 0.1814 0.1873 0.193 5.78% Gravity::get_old_grav_vector() 10 0.1805 0.1866 0.1923 5.76% FillPatchIterator::Initialize 41 0.1518 0.1623 0.1918 5.75% Castro::construct_new_gravity() 10 0.1822 0.1859 0.1887 5.65% Castro::initialize_do_advance() 10 0.1566 0.1617 0.1724 5.17% Amr::init() 1 0.163 0.1634 0.1635 4.90% FillPatchIterator::FillFromLevel0() 41 0.11 0.1212 0.1558 4.67% FillPatchSingleLevel 41 0.1099 0.1211 0.1557 4.66% Amr::initialInit() 1 0.1485 0.1488 0.149 4.46% Castro::clean_state() 62 0.1099 0.1234 0.1376 4.12% FabArray::ParallelCopy() 41 0.07959 0.08863 0.1232 3.69% Castro::expand_state() 10 0.1014 0.1079 0.123 3.68% Amr::InitializeInit() 1 0.05825 0.09137 0.1225 3.67% Amr::defBaseLevel() 1 0.05824 0.09136 0.1225 3.67% check_for_negative_density() 10 0.02024 0.07603 0.1168 3.50% Castro::initData() 1 0.04084 0.07401 0.1052 3.15% Castro::estTimeStep() 21 0.02554 0.06202 0.0999 2.99% Castro::do_old_sources() 10 0.0924 0.09573 0.09769 2.93% Amr::FinalizeInit() 1 0.02651 0.05745 0.09074 2.72% FabArray::ParallelCopy_finish() 41 0.0368 0.04773 0.08672 2.60% amrex::Copy() 193 0.06242 0.07732 0.08543 2.56% Castro::initialize_advance() 10 0.05388 0.07048 0.07699 2.31% FabArray::setVal() 143 0.05659 0.06773 0.07308 2.19% Castro::do_new_sources() 10 0.06057 0.0655 0.07157 2.14% Castro::computeTemp() 63 0.0591 0.06543 0.06889 2.06% Castro::computeInitialDt() 2 0.002235 0.03326 0.06647 1.99% Castro::normalize_species() 62 0.0455 0.05256 0.06523 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04167 0.04693 0.04942 1.48% Castro::reset_internal_energy(Fab) 1008 0.04137 0.04662 0.04911 1.47% FabArray::ParallelCopy_nowait() 41 0.03634 0.04081 0.04362 1.31% StateDataPhysBCFunct::() 41 0.0302 0.03243 0.03593 1.08% StateData::FillBoundary(geom) 41 0.0301 0.03232 0.03581 1.07% Castro::construct_new_source() 50 0.02867 0.03067 0.03309 0.99% Gravity::interpolate_monopole_grav() 21 0.02638 0.02665 0.02702 0.81% Castro::construct_new_gravity_source() 10 0.02262 0.02461 0.02684 0.80% Castro::finalize_do_advance() 10 0.01435 0.02072 0.02548 0.76% Castro::post_init() 1 0.02333 0.02354 0.02385 0.71% Amr::writePlotFile() 2 0.02207 0.02217 0.02251 0.67% Castro::post_timestep() 10 0.01501 0.01718 0.01992 0.60% Castro::apply_source_to_state() 20 0.01036 0.01259 0.01375 0.41% FabArray::Saxpy() 20 0.01032 0.01254 0.0137 0.41% Castro::check_for_nan() 20 0.01037 0.01165 0.01284 0.38% MultiFab::contains_nan() 20 0.01034 0.01162 0.01281 0.38% VisMF::Write(FabArray) 2 0.008766 0.009486 0.01192 0.36% Castro::Castro() 1 0.01138 0.01149 0.01165 0.35% FabArray::setDomainBndry() 41 0.007683 0.009363 0.01142 0.34% Castro::construct_old_source() 50 0.007076 0.009606 0.01049 0.31% Castro::construct_old_gravity_source() 10 0.007018 0.009532 0.01042 0.31% Castro::computeNewDt() 9 0.009166 0.009174 0.009187 0.28% Castro::enforce_min_density() 62 0.005626 0.006073 0.006689 0.20% Other 200 0.02668 0.02924 0.03114 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6778 KiB 6784 KiB 6789 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4565 KiB 4575 KiB 4601 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 219 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2810 KiB 2813 KiB 2813 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 240 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 40 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized