Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:20 UTC on 2025-04-16. Successfully read inputs file ... Castro git describe: 25.04-12-gd67aeb8b9 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-2-gd16f2b52 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.021682585 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.424387233 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.394233827 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.390053704 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.391009156 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.377002976 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.375332607 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.376287867 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.375448317 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.374836547 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.380484099 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012600856 seconds Ending run at 05:19:25 UTC on 2025-04-16. Run time = 4.091945789 Run time without initialization = 3.879282527 Average number of zones advanced per microsecond: 0.676 Average number of zones advanced per microsecond per rank: 0.084 TinyProfiler total time across processes [min...avg...max]: 4.0846 ... 4.0882 ... 4.0920 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2780 2.5237 2.7651 67.57% check_for_negative_density() 10 0.004573 0.2535 0.5053 12.35% Gravity::make_radial_gravity() 21 0.2937 0.313 0.3372 8.24% amrex::Copy() 193 0.0936 0.1184 0.1345 3.29% Castro::initData() 1 0.05379 0.07922 0.1136 2.78% FabArray::setVal() 143 0.09145 0.1018 0.1083 2.65% Castro::estTimeStep() 21 0.02317 0.06898 0.09914 2.42% FabArray::ParallelCopy_finish() 41 0.0559 0.06769 0.0963 2.35% FabArray::ParallelCopy_nowait() 41 0.05514 0.06447 0.07021 1.72% FillPatchIterator::Initialize 41 0.04738 0.05688 0.06314 1.54% Castro::normalize_species() 62 0.04727 0.05225 0.05625 1.37% Castro::reset_internal_energy(Fab) 1008 0.0474 0.05145 0.05539 1.35% StateData::FillBoundary(geom) 41 0.03543 0.04114 0.04963 1.21% Castro::construct_new_gravity_source() 10 0.02886 0.0324 0.03716 0.91% Castro::initialize_do_advance() 10 0.02445 0.0267 0.03026 0.74% Gravity::interpolate_monopole_grav() 21 0.02652 0.02686 0.02723 0.67% Castro::computeTemp() 63 0.01966 0.02053 0.02159 0.53% FabArray::setDomainBndry() 41 0.01723 0.01923 0.02124 0.52% Amr::writePlotFile() 2 0.01157 0.01605 0.02106 0.51% FabArray::Saxpy() 20 0.01719 0.01972 0.02093 0.51% Castro::initialize_advance() 10 0.01658 0.0172 0.0179 0.44% VisMF::Write(FabArray) 2 0.01111 0.01374 0.01789 0.44% Castro::construct_old_gravity_source() 10 0.01544 0.01672 0.01739 0.42% MultiFab::contains_nan() 20 0.01332 0.01466 0.01573 0.38% Castro::initMFs() 1 0.008787 0.01157 0.0139 0.34% StateData::define() 4 0.007071 0.009086 0.01064 0.26% Castro::construct_new_source() 50 0.007328 0.008218 0.009067 0.22% main() 1 0.006542 0.007005 0.007191 0.18% Gravity::get_new_grav_vector() 11 0.004291 0.005479 0.006418 0.16% Amr::coarseTimeStep() 10 0.001975 0.003013 0.003981 0.10% Gravity::get_old_grav_vector() 10 0.002793 0.002995 0.00328 0.08% Castro::finalize_do_advance() 10 0.001245 0.001294 0.001325 0.03% AmrLevel::FillPatch() 41 0.001031 0.001171 0.001293 0.03% Amr::timeStep() 10 0.0001543 0.0002268 0.0004992 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003278 0.0003624 0.000416 0.01% Castro::do_advance_ctu() 10 0.0002164 0.000244 0.0002806 0.01% Castro::clean_state() 62 0.000197 0.0002213 0.0002366 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001487 0.0001634 0.0001771 0.00% Castro::do_old_sources() 10 0.0001313 0.0001517 0.0001716 0.00% StateDataPhysBCFunct::() 41 0.0001315 0.0001498 0.0001698 0.00% FabArray::ParallelCopy() 41 0.0001366 0.0001444 0.0001526 0.00% Castro::construct_old_source() 50 8.82e-05 0.0001136 0.0001341 0.00% Castro::Castro() 1 5.867e-05 9.038e-05 0.0001274 0.00% FillPatchSingleLevel 41 9.429e-05 0.0001007 0.0001126 0.00% Castro::do_new_sources() 10 7.424e-05 8.335e-05 9.613e-05 0.00% Castro::advance() 10 5.429e-05 6.677e-05 9.354e-05 0.00% Castro::apply_source_to_state() 20 5.791e-05 7.361e-05 8.435e-05 0.00% Castro::subcycle_advance_ctu() 10 5.94e-05 6.972e-05 8.417e-05 0.00% Amr::FinalizeInit() 1 4.446e-06 1.497e-05 7.952e-05 0.00% Castro::construct_new_gravity() 10 3.212e-05 4.597e-05 7.122e-05 0.00% Castro::expand_state() 10 3.968e-05 5.257e-05 7.103e-05 0.00% Amr::defBaseLevel() 1 4.512e-05 5.71e-05 6.59e-05 0.00% Castro::construct_old_gravity() 10 4.792e-05 5.395e-05 6.014e-05 0.00% Castro::check_for_nan() 20 3.155e-05 3.564e-05 3.897e-05 0.00% Castro::computeNewDt() 9 9.73e-06 1.309e-05 2.819e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.037e-05 2.06e-05 2.68e-05 0.00% Castro::post_timestep() 10 1.657e-05 2.016e-05 2.458e-05 0.00% Castro::post_init() 1 1.507e-05 1.744e-05 2.113e-05 0.00% Amr::InitializeInit() 1 3.128e-06 4.622e-06 8.06e-06 0.00% Amr::init() 1 2.095e-06 3.039e-06 7.163e-06 0.00% Castro::computeInitialDt() 2 4.247e-06 5.106e-06 5.766e-06 0.00% Amr::initialInit() 1 2.053e-06 2.402e-06 2.975e-06 0.00% Other 256 0.01323 0.01947 0.02507 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.085 4.088 4.092 100.00% Amr::coarseTimeStep() 10 3.86 3.86 3.86 94.32% Amr::timeStep() 10 3.846 3.847 3.848 94.03% Castro::advance() 10 3.828 3.829 3.83 93.60% Castro::subcycle_advance_ctu() 10 3.715 3.72 3.726 91.06% Castro::do_advance_ctu() 10 3.715 3.72 3.726 91.06% Castro::construct_ctu_hydro_source() 10 2.793 2.801 2.809 68.65% check_for_negative_density() 10 0.004573 0.2535 0.5053 12.35% Gravity::make_radial_gravity() 21 0.3191 0.3364 0.3581 8.75% AmrLevel::FillPatch() 41 0.279 0.3005 0.3225 7.88% FillPatchIterator::Initialize 41 0.2384 0.2501 0.263 6.43% Castro::initialize_do_advance() 10 0.2252 0.2397 0.2542 6.21% Gravity::get_new_grav_vector() 11 0.2336 0.2351 0.2369 5.79% Castro::construct_old_gravity() 10 0.1951 0.2074 0.2231 5.45% Gravity::get_old_grav_vector() 10 0.1941 0.2065 0.2223 5.43% Amr::init() 1 0.2054 0.2086 0.2123 5.19% Castro::construct_new_gravity() 10 0.2035 0.2051 0.2068 5.05% FillPatchIterator::FillFromLevel0() 41 0.1662 0.174 0.1902 4.65% Amr::initialInit() 1 0.1831 0.1863 0.1901 4.64% FillPatchSingleLevel 41 0.1661 0.1738 0.19 4.64% Castro::expand_state() 10 0.1501 0.1674 0.1844 4.51% FabArray::ParallelCopy() 41 0.1244 0.1324 0.1517 3.71% Amr::InitializeInit() 1 0.08952 0.1132 0.1511 3.69% Amr::defBaseLevel() 1 0.08952 0.1132 0.1511 3.69% Castro::do_old_sources() 10 0.1411 0.1449 0.1485 3.63% Castro::clean_state() 62 0.1286 0.1311 0.1364 3.33% amrex::Copy() 193 0.0936 0.1184 0.1345 3.29% Castro::initData() 1 0.05851 0.08364 0.118 2.88% Castro::initialize_advance() 10 0.09802 0.1043 0.1093 2.67% FabArray::setVal() 143 0.09145 0.1018 0.1083 2.65% Castro::estTimeStep() 21 0.02317 0.06898 0.09914 2.42% FabArray::ParallelCopy_finish() 41 0.0559 0.06769 0.0963 2.35% Amr::FinalizeInit() 1 0.03429 0.0731 0.09615 2.35% Castro::do_new_sources() 10 0.07337 0.08016 0.08548 2.09% Castro::computeTemp() 63 0.06747 0.07235 0.07677 1.88% FabArray::ParallelCopy_nowait() 41 0.05527 0.0646 0.07034 1.72% Castro::computeInitialDt() 2 0.002378 0.04125 0.06485 1.58% Castro::normalize_species() 62 0.04727 0.05225 0.05625 1.37% Castro::reset_internal_energy(MultiFab) 63 0.04773 0.05181 0.05576 1.36% Castro::reset_internal_energy(Fab) 1008 0.0474 0.05145 0.05539 1.35% StateDataPhysBCFunct::() 41 0.03556 0.04128 0.04979 1.22% StateData::FillBoundary(geom) 41 0.03543 0.04114 0.04963 1.21% Castro::construct_new_source() 50 0.03654 0.04062 0.04579 1.12% Castro::construct_new_gravity_source() 10 0.02886 0.0324 0.03716 0.91% Amr::writePlotFile() 2 0.03453 0.03494 0.03551 0.87% Castro::post_init() 1 0.03061 0.03122 0.03159 0.77% Castro::finalize_do_advance() 10 0.01334 0.02027 0.02995 0.73% Gravity::interpolate_monopole_grav() 21 0.02652 0.02686 0.02723 0.67% FabArray::setDomainBndry() 41 0.01723 0.01923 0.02124 0.52% Castro::apply_source_to_state() 20 0.01725 0.01979 0.02101 0.51% FabArray::Saxpy() 20 0.01719 0.01972 0.02093 0.51% Castro::Castro() 1 0.01365 0.01718 0.02044 0.50% VisMF::Write(FabArray) 2 0.01111 0.01374 0.01789 0.44% Castro::post_timestep() 10 0.01616 0.01695 0.01779 0.43% Castro::construct_old_source() 50 0.01553 0.01683 0.0175 0.43% Castro::construct_old_gravity_source() 10 0.01544 0.01672 0.01739 0.42% Castro::check_for_nan() 20 0.01335 0.0147 0.01577 0.39% MultiFab::contains_nan() 20 0.01332 0.01466 0.01573 0.38% Castro::initMFs() 1 0.008787 0.01157 0.0139 0.34% AmrLevel::AmrLevel(dm) 1 0.007081 0.009107 0.01067 0.26% StateData::define() 4 0.007071 0.009086 0.01064 0.26% Castro::computeNewDt() 9 0.008742 0.008778 0.008803 0.22% Other 256 0.01883 0.02959 0.03991 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 37 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8640 KiB 8653 KiB 8659 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6761 KiB 6766 KiB 6773 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7134 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4538 KiB 4546 KiB 4551 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 255 KiB 278 KiB 302 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 21 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2809 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 199 KiB 209 KiB 223 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 47 KiB 49 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2026 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 64 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized