Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:39:00 UTC on 2025-04-17. Successfully read inputs file ... Castro git describe: 25.04-12-gd67aeb8b9 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-2-gd16f2b52 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015598229 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349443086 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325925359 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322983305 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.319721855 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.381350735 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304848583 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.292993204 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293806498 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.293733604 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.294100339 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007987269 seconds Ending run at 05:39:03 UTC on 2025-04-17. Run time = 3.369127126 Run time without initialization = 3.192092756 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3672 ... 3.3684 ... 3.3692 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1707 2.2180 2.2731 67.47% Gravity::make_radial_gravity() 21 0.2913 0.2983 0.3058 9.08% check_for_negative_density() 10 0.02312 0.07627 0.1234 3.66% Castro::initData() 1 0.03708 0.07154 0.111 3.29% Castro::estTimeStep() 21 0.02426 0.06697 0.1052 3.12% amrex::Copy() 193 0.08147 0.08585 0.09168 2.72% FabArray::setVal() 143 0.06817 0.07123 0.07626 2.26% FabArray::ParallelCopy_finish() 41 0.03728 0.05803 0.06885 2.04% Castro::normalize_species() 62 0.04492 0.047 0.05509 1.63% Castro::reset_internal_energy(Fab) 1008 0.04265 0.04688 0.05132 1.52% FabArray::ParallelCopy_nowait() 41 0.03875 0.04276 0.04566 1.36% StateData::FillBoundary(geom) 41 0.02998 0.0337 0.0407 1.21% FillPatchIterator::Initialize 41 0.02957 0.03511 0.03918 1.16% Gravity::interpolate_monopole_grav() 21 0.02653 0.02684 0.02758 0.82% Castro::construct_new_gravity_source() 10 0.02354 0.02517 0.02727 0.81% Castro::computeTemp() 63 0.01753 0.01821 0.01907 0.57% Castro::initialize_do_advance() 10 0.01705 0.01815 0.01861 0.55% Castro::initialize_advance() 10 0.01045 0.01257 0.01505 0.45% FabArray::Saxpy() 20 0.01208 0.01357 0.0145 0.43% VisMF::Write(FabArray) 2 0.009346 0.009923 0.01262 0.37% MultiFab::contains_nan() 20 0.01093 0.01168 0.01256 0.37% FabArray::setDomainBndry() 41 0.007666 0.01069 0.01202 0.36% Amr::writePlotFile() 2 0.008246 0.01084 0.0114 0.34% Castro::construct_old_gravity_source() 10 0.01021 0.01057 0.01085 0.32% Castro::initMFs() 1 0.006519 0.006893 0.008428 0.25% Castro::construct_new_source() 50 0.006053 0.006263 0.006486 0.19% main() 1 0.003847 0.004083 0.004629 0.14% Gravity::get_new_grav_vector() 11 0.003321 0.003775 0.004086 0.12% Gravity::get_old_grav_vector() 10 0.001729 0.00216 0.002588 0.08% Amr::coarseTimeStep() 10 0.0007599 0.001795 0.002394 0.07% Castro::finalize_do_advance() 10 0.001225 0.001283 0.001415 0.04% AmrLevel::FillPatch() 41 0.0009607 0.001081 0.001188 0.04% Amr::timeStep() 10 0.0001321 0.0001856 0.0003753 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002759 0.0002952 0.0003366 0.01% Castro::do_advance_ctu() 10 0.0001504 0.0001814 0.0002245 0.01% Castro::clean_state() 62 0.0001467 0.000166 0.0001885 0.01% StateDataPhysBCFunct::() 41 0.0001018 0.0001196 0.0001485 0.00% FillPatchIterator::FillFromLevel0() 41 9.482e-05 0.0001039 0.0001239 0.00% Castro::do_old_sources() 10 8.075e-05 0.0001012 0.0001222 0.00% Amr::FinalizeInit() 1 4.47e-06 1.848e-05 0.0001134 0.00% Castro::Castro() 1 5.359e-05 8.426e-05 9.939e-05 0.00% FabArray::ParallelCopy() 41 8.712e-05 9.16e-05 9.616e-05 0.00% Castro::construct_old_source() 50 6.072e-05 7.273e-05 9.384e-05 0.00% FillPatchSingleLevel 41 5.946e-05 6.814e-05 7.64e-05 0.00% Castro::do_new_sources() 10 5.375e-05 6.059e-05 6.835e-05 0.00% Amr::defBaseLevel() 1 3.709e-05 4.311e-05 5.631e-05 0.00% Castro::apply_source_to_state() 20 4.246e-05 4.836e-05 5.583e-05 0.00% Castro::advance() 10 4.54e-05 5.006e-05 5.479e-05 0.00% Castro::subcycle_advance_ctu() 10 4.169e-05 4.939e-05 5.227e-05 0.00% Castro::construct_old_gravity() 10 3.832e-05 4.19e-05 4.721e-05 0.00% Castro::construct_new_gravity() 10 2.752e-05 3.475e-05 4.371e-05 0.00% Castro::check_for_nan() 20 2.413e-05 2.785e-05 3.132e-05 0.00% Castro::expand_state() 10 2.101e-05 2.576e-05 2.941e-05 0.00% Castro::post_init() 1 1.51e-05 1.767e-05 2.258e-05 0.00% Castro::post_timestep() 10 1.422e-05 1.639e-05 1.898e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.78e-06 1.083e-05 1.235e-05 0.00% Castro::computeNewDt() 9 9.372e-06 1.048e-05 1.185e-05 0.00% Amr::InitializeInit() 1 2.516e-06 3.371e-06 7.15e-06 0.00% Castro::computeInitialDt() 2 3.525e-06 3.965e-06 4.448e-06 0.00% Amr::initialInit() 1 1.454e-06 2.119e-06 2.886e-06 0.00% Amr::init() 1 1.913e-06 2.407e-06 2.663e-06 0.00% Other 260 0.01619 0.01924 0.02095 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.367 3.368 3.369 100.00% Amr::coarseTimeStep() 10 3.18 3.18 3.18 94.37% Amr::timeStep() 10 3.167 3.168 3.169 94.06% Castro::advance() 10 3.152 3.152 3.152 93.56% Castro::subcycle_advance_ctu() 10 3.072 3.075 3.077 91.33% Castro::do_advance_ctu() 10 3.072 3.075 3.077 91.33% Castro::construct_ctu_hydro_source() 10 2.31 2.316 2.32 68.87% Gravity::make_radial_gravity() 21 0.3089 0.3158 0.3222 9.56% AmrLevel::FillPatch() 41 0.205 0.2168 0.2324 6.90% Gravity::get_new_grav_vector() 11 0.2093 0.2114 0.2125 6.31% FillPatchIterator::Initialize 41 0.1665 0.1807 0.1951 5.79% Castro::construct_old_gravity() 10 0.1833 0.188 0.1936 5.75% Gravity::get_old_grav_vector() 10 0.1826 0.1873 0.1928 5.72% Castro::construct_new_gravity() 10 0.1872 0.1881 0.1894 5.62% Amr::init() 1 0.1755 0.1764 0.1767 5.24% Castro::initialize_do_advance() 10 0.1594 0.167 0.1705 5.06% Amr::initialInit() 1 0.1598 0.1608 0.1611 4.78% FillPatchIterator::FillFromLevel0() 41 0.1164 0.135 0.1466 4.35% FillPatchSingleLevel 41 0.1163 0.1349 0.1465 4.35% Amr::InitializeInit() 1 0.05905 0.09322 0.1326 3.94% Amr::defBaseLevel() 1 0.05904 0.09322 0.1326 3.94% Castro::clean_state() 62 0.1113 0.1178 0.1297 3.85% Castro::do_old_sources() 10 0.1116 0.1166 0.1236 3.67% check_for_negative_density() 10 0.02312 0.07627 0.1234 3.66% Castro::expand_state() 10 0.1037 0.1109 0.1154 3.43% Castro::initData() 1 0.04095 0.07536 0.1143 3.39% FabArray::ParallelCopy() 41 0.08312 0.101 0.1078 3.20% Castro::estTimeStep() 21 0.02426 0.06697 0.1052 3.12% Amr::FinalizeInit() 1 0.02721 0.06756 0.102 3.03% amrex::Copy() 193 0.08147 0.08585 0.09168 2.72% Castro::initialize_advance() 10 0.07155 0.07396 0.07692 2.28% Castro::computeInitialDt() 2 0.002154 0.0425 0.07686 2.28% FabArray::setVal() 143 0.06817 0.07123 0.07626 2.26% Castro::computeTemp() 63 0.06045 0.06539 0.07008 2.08% Castro::do_new_sources() 10 0.0619 0.06554 0.06943 2.06% FabArray::ParallelCopy_finish() 41 0.03728 0.05803 0.06885 2.04% Castro::normalize_species() 62 0.04492 0.047 0.05509 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04293 0.04718 0.05165 1.53% Castro::reset_internal_energy(Fab) 1008 0.04265 0.04688 0.05132 1.52% FabArray::ParallelCopy_nowait() 41 0.03886 0.04285 0.04575 1.36% StateDataPhysBCFunct::() 41 0.03012 0.03381 0.04081 1.21% StateData::FillBoundary(geom) 41 0.02998 0.0337 0.0407 1.21% Castro::construct_new_source() 50 0.0296 0.03143 0.03375 1.00% Gravity::interpolate_monopole_grav() 21 0.02653 0.02684 0.02758 0.82% Castro::construct_new_gravity_source() 10 0.02354 0.02517 0.02727 0.81% Castro::post_init() 1 0.02387 0.02456 0.02476 0.73% Amr::writePlotFile() 2 0.02364 0.02374 0.02386 0.71% Castro::finalize_do_advance() 10 0.01258 0.01704 0.02092 0.62% Castro::post_timestep() 10 0.01514 0.01577 0.01657 0.49% Castro::apply_source_to_state() 20 0.01213 0.01362 0.01456 0.43% FabArray::Saxpy() 20 0.01208 0.01357 0.0145 0.43% VisMF::Write(FabArray) 2 0.009346 0.009923 0.01262 0.37% Castro::check_for_nan() 20 0.01096 0.0117 0.01259 0.37% MultiFab::contains_nan() 20 0.01093 0.01168 0.01256 0.37% FabArray::setDomainBndry() 41 0.007666 0.01069 0.01202 0.36% Castro::Castro() 1 0.0104 0.01103 0.01199 0.36% Castro::construct_old_source() 50 0.01027 0.01064 0.01092 0.32% Castro::construct_old_gravity_source() 10 0.01021 0.01057 0.01085 0.32% Castro::computeNewDt() 9 0.008703 0.008722 0.008733 0.26% Castro::initMFs() 1 0.006519 0.006893 0.008428 0.25% AmrLevel::AmrLevel(dm) 1 0.005516 0.005772 0.006257 0.19% Other 260 0.02082 0.02516 0.02776 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6754 KiB 6760 KiB 6762 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4553 KiB 4559 KiB 4563 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 228 KiB 238 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 239 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized