Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:31 UTC on 2025-04-18. Successfully read inputs file ... Castro git describe: 25.04-12-gd67aeb8b9 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-2-gd16f2b52 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017765552 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348658335 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.336166692 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314419416 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309347578 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.348941852 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300890001 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.291732628 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293359711 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.292441778 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.292391608 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007904261 seconds Ending run at 05:18:35 UTC on 2025-04-18. Run time = 3.316536508 Run time without initialization = 3.142188688 Average number of zones advanced per microsecond: 0.834 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3143 ... 3.3152 ... 3.3166 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1649 2.2140 2.2539 67.96% Gravity::make_radial_gravity() 21 0.2979 0.3052 0.3144 9.48% check_for_negative_density() 10 0.01887 0.06411 0.1184 3.57% Castro::initData() 1 0.04224 0.07391 0.1011 3.05% Castro::estTimeStep() 21 0.0345 0.0596 0.08623 2.60% amrex::Copy() 193 0.06502 0.07285 0.07784 2.35% FabArray::setVal() 143 0.05727 0.06324 0.06948 2.09% FabArray::ParallelCopy_finish() 41 0.0424 0.04829 0.06041 1.82% Castro::normalize_species() 62 0.04499 0.04625 0.04743 1.43% Castro::reset_internal_energy(Fab) 1008 0.04147 0.04483 0.04643 1.40% FabArray::ParallelCopy_nowait() 41 0.03628 0.04037 0.0423 1.28% StateData::FillBoundary(geom) 41 0.03043 0.03365 0.03786 1.14% FillPatchIterator::Initialize 41 0.02876 0.03427 0.03678 1.11% Gravity::interpolate_monopole_grav() 21 0.02659 0.02695 0.02734 0.82% Castro::construct_new_gravity_source() 10 0.02111 0.02281 0.02685 0.81% Castro::computeTemp() 63 0.01655 0.01793 0.01849 0.56% Castro::initialize_do_advance() 10 0.01497 0.01678 0.01833 0.55% Castro::initialize_advance() 10 0.01053 0.01244 0.01474 0.44% VisMF::Write(FabArray) 2 0.009925 0.01066 0.0142 0.43% Amr::writePlotFile() 2 0.008976 0.01242 0.01336 0.40% FabArray::Saxpy() 20 0.01055 0.01133 0.01211 0.37% MultiFab::contains_nan() 20 0.01082 0.01132 0.01211 0.37% FabArray::setDomainBndry() 41 0.007715 0.01047 0.01199 0.36% Castro::initMFs() 1 0.007928 0.009171 0.0119 0.36% Castro::construct_old_gravity_source() 10 0.007226 0.00885 0.009431 0.28% Castro::construct_new_source() 50 0.005279 0.0056 0.005896 0.18% main() 1 0.00425 0.004867 0.005417 0.16% Gravity::get_new_grav_vector() 11 0.002829 0.003404 0.003767 0.11% Amr::coarseTimeStep() 10 0.001679 0.00256 0.003705 0.11% Gravity::get_old_grav_vector() 10 0.001744 0.002119 0.002793 0.08% AmrLevel::FillPatch() 41 0.0008138 0.001171 0.001755 0.05% Castro::finalize_do_advance() 10 0.0005303 0.000912 0.001081 0.03% Amr::timeStep() 10 0.0001396 0.0001822 0.0003761 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002759 0.0002914 0.0003274 0.01% Castro::clean_state() 62 0.0001496 0.0001601 0.000172 0.01% Castro::do_advance_ctu() 10 0.0001455 0.000158 0.0001709 0.01% StateDataPhysBCFunct::() 41 9.541e-05 0.0001035 0.0001154 0.00% FillPatchIterator::FillFromLevel0() 41 9.456e-05 9.978e-05 0.0001059 0.00% FabArray::ParallelCopy() 41 8.481e-05 8.942e-05 0.0001015 0.00% Castro::do_old_sources() 10 7.341e-05 8.398e-05 9.053e-05 0.00% Castro::Castro() 1 4.713e-05 6.606e-05 8.145e-05 0.00% Amr::FinalizeInit() 1 3.9e-06 1.345e-05 7.522e-05 0.00% FillPatchSingleLevel 41 6.076e-05 6.424e-05 6.999e-05 0.00% Amr::defBaseLevel() 1 4.525e-05 5.456e-05 6.929e-05 0.00% Castro::construct_old_source() 50 5.188e-05 5.973e-05 6.843e-05 0.00% Castro::advance() 10 4.31e-05 5.101e-05 5.993e-05 0.00% Castro::do_new_sources() 10 4.896e-05 5.359e-05 5.967e-05 0.00% Castro::apply_source_to_state() 20 4.009e-05 4.377e-05 5.797e-05 0.00% Castro::subcycle_advance_ctu() 10 4.2e-05 4.629e-05 5.47e-05 0.00% Castro::construct_old_gravity() 10 3.47e-05 3.904e-05 4.876e-05 0.00% Castro::check_for_nan() 20 2.264e-05 2.855e-05 3.887e-05 0.00% Castro::construct_new_gravity() 10 3.125e-05 3.313e-05 3.746e-05 0.00% Castro::expand_state() 10 2.007e-05 2.45e-05 2.804e-05 0.00% Castro::post_init() 1 1.45e-05 1.721e-05 2.664e-05 0.00% Castro::post_timestep() 10 1.372e-05 1.531e-05 1.718e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.014e-05 1.274e-05 1.711e-05 0.00% Castro::computeNewDt() 9 9.701e-06 1.058e-05 1.167e-05 0.00% Amr::InitializeInit() 1 2.688e-06 4.49e-06 7.615e-06 0.00% Castro::computeInitialDt() 2 3.898e-06 4.435e-06 5.972e-06 0.00% Amr::initialInit() 1 1.526e-06 2.007e-06 2.68e-06 0.00% Amr::init() 1 1.514e-06 2.085e-06 2.621e-06 0.00% Other 260 0.01721 0.02112 0.02492 0.75% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.314 3.315 3.317 100.00% Amr::coarseTimeStep() 10 3.129 3.129 3.129 94.34% Amr::timeStep() 10 3.114 3.115 3.116 93.96% Castro::advance() 10 3.099 3.099 3.1 93.46% Castro::subcycle_advance_ctu() 10 3.024 3.026 3.03 91.37% Castro::do_advance_ctu() 10 3.024 3.026 3.03 91.36% Castro::construct_ctu_hydro_source() 10 2.292 2.299 2.305 69.50% Gravity::make_radial_gravity() 21 0.3124 0.3201 0.3285 9.90% Gravity::get_new_grav_vector() 11 0.2126 0.2139 0.2156 6.50% AmrLevel::FillPatch() 41 0.1892 0.1972 0.2105 6.35% Castro::construct_old_gravity() 10 0.182 0.1872 0.1933 5.83% Gravity::get_old_grav_vector() 10 0.1813 0.1866 0.1927 5.81% Castro::construct_new_gravity() 10 0.1874 0.1884 0.1898 5.72% FillPatchIterator::Initialize 41 0.1617 0.1675 0.1763 5.32% Amr::init() 1 0.172 0.1731 0.174 5.25% Castro::initialize_do_advance() 10 0.158 0.1645 0.1679 5.06% Amr::initialInit() 1 0.1545 0.1553 0.1564 4.72% FillPatchIterator::FillFromLevel0() 41 0.1171 0.1228 0.1291 3.89% FillPatchSingleLevel 41 0.117 0.1227 0.129 3.89% Amr::InitializeInit() 1 0.06728 0.09939 0.1266 3.82% Amr::defBaseLevel() 1 0.06728 0.09938 0.1266 3.82% check_for_negative_density() 10 0.01887 0.06411 0.1184 3.57% Castro::clean_state() 62 0.1088 0.1144 0.1175 3.54% Castro::expand_state() 10 0.1058 0.1114 0.1167 3.52% Castro::initData() 1 0.04598 0.07791 0.1054 3.18% FabArray::ParallelCopy() 41 0.08454 0.08884 0.09687 2.92% Castro::do_old_sources() 10 0.08672 0.0906 0.09593 2.89% Amr::FinalizeInit() 1 0.02951 0.05587 0.0872 2.63% Castro::estTimeStep() 21 0.0345 0.0596 0.08623 2.60% amrex::Copy() 193 0.06502 0.07285 0.07784 2.35% Castro::initialize_advance() 10 0.06606 0.06989 0.07266 2.19% FabArray::setVal() 143 0.05727 0.06324 0.06948 2.09% Castro::computeTemp() 63 0.05842 0.06306 0.06511 1.96% Castro::do_new_sources() 10 0.05566 0.06033 0.06327 1.91% Castro::computeInitialDt() 2 0.003387 0.02959 0.06061 1.83% FabArray::ParallelCopy_finish() 41 0.0424 0.04829 0.06041 1.82% Castro::normalize_species() 62 0.04499 0.04625 0.04743 1.43% Castro::reset_internal_energy(MultiFab) 63 0.04174 0.04513 0.04673 1.41% Castro::reset_internal_energy(Fab) 1008 0.04147 0.04483 0.04643 1.40% FabArray::ParallelCopy_nowait() 41 0.03637 0.04046 0.04238 1.28% StateDataPhysBCFunct::() 41 0.03053 0.03375 0.03797 1.14% StateData::FillBoundary(geom) 41 0.03043 0.03365 0.03786 1.14% Castro::construct_new_source() 50 0.02639 0.02841 0.03275 0.99% Gravity::interpolate_monopole_grav() 21 0.02659 0.02695 0.02734 0.82% Castro::post_init() 1 0.02649 0.0267 0.02698 0.81% Castro::construct_new_gravity_source() 10 0.02111 0.02281 0.02685 0.81% Amr::writePlotFile() 2 0.02548 0.02579 0.02604 0.79% Castro::finalize_do_advance() 10 0.01737 0.02188 0.02596 0.78% Castro::post_timestep() 10 0.01464 0.01574 0.01626 0.49% Castro::Castro() 1 0.01233 0.01334 0.01539 0.46% VisMF::Write(FabArray) 2 0.009925 0.01066 0.0142 0.43% Castro::apply_source_to_state() 20 0.01059 0.01137 0.01217 0.37% Castro::check_for_nan() 20 0.01084 0.01135 0.01213 0.37% FabArray::Saxpy() 20 0.01055 0.01133 0.01211 0.37% MultiFab::contains_nan() 20 0.01082 0.01132 0.01211 0.37% FabArray::setDomainBndry() 41 0.007715 0.01047 0.01199 0.36% Castro::initMFs() 1 0.007928 0.009171 0.0119 0.36% Castro::construct_old_source() 50 0.007278 0.00891 0.009493 0.29% Castro::construct_old_gravity_source() 10 0.007226 0.00885 0.009431 0.28% Castro::computeNewDt() 9 0.009034 0.009051 0.009064 0.27% AmrLevel::AmrLevel(dm) 1 0.006444 0.006944 0.007877 0.24% Other 260 0.02162 0.02697 0.03222 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8645 KiB 8660 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6751 KiB 6757 KiB 6759 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7136 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4560 KiB 4563 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 225 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 239 KiB 245 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 41 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized