Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:26 UTC on 2025-04-21. Successfully read inputs file ... Castro git describe: 25.04-13-g17d0a8f7a AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-2-gd16f2b52 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014602933 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.336972609 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.334495422 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.310748241 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312346563 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.354521596 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304768062 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293534517 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29596129 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296128612 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29585758 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007655415 seconds Ending run at 05:19:29 UTC on 2025-04-21. Run time = 3.322917114 Run time without initialization = 3.147406609 Average number of zones advanced per microsecond: 0.833 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3217 ... 3.3223 ... 3.3229 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1714 2.2168 2.2517 67.76% Gravity::make_radial_gravity() 21 0.2908 0.2974 0.3099 9.33% Castro::initData() 1 0.03761 0.07215 0.1111 3.34% check_for_negative_density() 10 0.03767 0.06995 0.1093 3.29% Castro::estTimeStep() 21 0.03036 0.06776 0.1045 3.15% FabArray::ParallelCopy_finish() 41 0.0368 0.04938 0.08845 2.66% amrex::Copy() 193 0.06186 0.07781 0.08663 2.61% FabArray::setVal() 143 0.05477 0.06575 0.07105 2.14% Castro::normalize_species() 62 0.04607 0.04717 0.05185 1.56% Castro::reset_internal_energy(Fab) 1008 0.04394 0.04578 0.04833 1.45% FabArray::ParallelCopy_nowait() 41 0.03598 0.04129 0.04793 1.44% FillPatchIterator::Initialize 41 0.02733 0.03206 0.03444 1.04% StateData::FillBoundary(geom) 41 0.03056 0.03203 0.03439 1.03% Gravity::interpolate_monopole_grav() 21 0.02651 0.02696 0.02734 0.82% Castro::construct_new_gravity_source() 10 0.02322 0.0246 0.02669 0.80% Castro::computeTemp() 63 0.0175 0.01802 0.01862 0.56% Castro::initialize_do_advance() 10 0.01149 0.0163 0.01739 0.52% Castro::initialize_advance() 10 0.005307 0.01083 0.01424 0.43% FabArray::Saxpy() 20 0.01046 0.01241 0.01365 0.41% Amr::writePlotFile() 2 0.007414 0.01016 0.01248 0.38% MultiFab::contains_nan() 20 0.01048 0.01135 0.01235 0.37% VisMF::Write(FabArray) 2 0.008734 0.009753 0.01235 0.37% FabArray::setDomainBndry() 41 0.007178 0.00961 0.01112 0.33% Castro::construct_old_gravity_source() 10 0.006979 0.009569 0.01016 0.31% Castro::initMFs() 1 0.006824 0.007121 0.008201 0.25% Castro::construct_new_source() 50 0.005794 0.006058 0.006268 0.19% main() 1 0.003468 0.00387 0.004034 0.12% Gravity::get_new_grav_vector() 11 0.002818 0.003428 0.003792 0.11% Amr::coarseTimeStep() 10 0.001591 0.00235 0.002758 0.08% Gravity::get_old_grav_vector() 10 0.001751 0.002078 0.002548 0.08% Castro::finalize_do_advance() 10 0.0004711 0.001191 0.001717 0.05% AmrLevel::FillPatch() 41 0.0007072 0.001014 0.001145 0.03% Amr::timeStep() 10 0.0001368 0.0001841 0.0004021 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002703 0.0002937 0.0003075 0.01% Castro::do_advance_ctu() 10 0.000133 0.0001608 0.0002021 0.01% Castro::clean_state() 62 0.0001457 0.0001595 0.0001803 0.01% StateDataPhysBCFunct::() 41 9.511e-05 0.000106 0.0001174 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001018 0.0001061 0.0001116 0.00% Castro::Castro() 1 5.277e-05 8.362e-05 0.0001088 0.00% FabArray::ParallelCopy() 41 8.443e-05 9.221e-05 0.0001035 0.00% Castro::do_old_sources() 10 7.326e-05 9.196e-05 0.0001022 0.00% Amr::FinalizeInit() 1 3.724e-06 1.644e-05 9.988e-05 0.00% Amr::defBaseLevel() 1 3.857e-05 5.101e-05 8.187e-05 0.00% Castro::construct_old_source() 50 4.718e-05 6.538e-05 7.409e-05 0.00% Castro::do_new_sources() 10 5.049e-05 6.22e-05 7.25e-05 0.00% FillPatchSingleLevel 41 6.177e-05 6.58e-05 7.175e-05 0.00% Castro::advance() 10 3.925e-05 5.212e-05 6.73e-05 0.00% Castro::apply_source_to_state() 20 4.055e-05 4.602e-05 5.554e-05 0.00% Castro::subcycle_advance_ctu() 10 4.139e-05 5.035e-05 5.485e-05 0.00% Castro::construct_old_gravity() 10 3.428e-05 3.957e-05 4.72e-05 0.00% Castro::construct_new_gravity() 10 2.7e-05 3.295e-05 3.975e-05 0.00% Castro::expand_state() 10 2.414e-05 2.835e-05 3.154e-05 0.00% Castro::check_for_nan() 20 2.347e-05 2.696e-05 3.046e-05 0.00% Castro::post_init() 1 1.501e-05 1.63e-05 1.91e-05 0.00% Castro::post_timestep() 10 1.315e-05 1.556e-05 1.722e-05 0.00% Castro::computeNewDt() 9 9.683e-06 1.035e-05 1.097e-05 0.00% Amr::InitializeInit() 1 2.777e-06 3.431e-06 5.614e-06 0.00% Castro::computeInitialDt() 2 3.098e-06 3.774e-06 4.278e-06 0.00% Amr::initialInit() 1 1.76e-06 2.143e-06 2.516e-06 0.00% Amr::init() 1 1.704e-06 1.953e-06 2.206e-06 0.00% Other 261 0.01597 0.01844 0.02056 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.322 3.322 3.323 100.00% Amr::coarseTimeStep() 10 3.136 3.136 3.136 94.37% Amr::timeStep() 10 3.123 3.124 3.124 94.03% Castro::advance() 10 3.107 3.107 3.108 93.53% Castro::subcycle_advance_ctu() 10 3.031 3.036 3.049 91.76% Castro::do_advance_ctu() 10 3.031 3.036 3.049 91.76% Castro::construct_ctu_hydro_source() 10 2.302 2.308 2.311 69.56% Gravity::make_radial_gravity() 21 0.3073 0.3134 0.3218 9.68% AmrLevel::FillPatch() 41 0.1825 0.1967 0.2155 6.49% Gravity::get_new_grav_vector() 11 0.2077 0.2088 0.21 6.32% Castro::construct_old_gravity() 10 0.1817 0.1852 0.1929 5.81% Gravity::get_old_grav_vector() 10 0.181 0.1846 0.1922 5.78% FillPatchIterator::Initialize 41 0.1506 0.1648 0.1911 5.75% Castro::construct_new_gravity() 10 0.1854 0.1862 0.1868 5.62% Amr::init() 1 0.1744 0.1747 0.1753 5.27% Castro::initialize_do_advance() 10 0.1574 0.1613 0.1675 5.04% Amr::initialInit() 1 0.1596 0.1599 0.1606 4.83% FillPatchIterator::FillFromLevel0() 41 0.1094 0.1232 0.1566 4.71% FillPatchSingleLevel 41 0.1093 0.1231 0.1565 4.71% Amr::InitializeInit() 1 0.05905 0.09361 0.1333 4.01% Amr::defBaseLevel() 1 0.05904 0.0936 0.1333 4.01% FabArray::ParallelCopy() 41 0.07746 0.09085 0.1246 3.75% Castro::expand_state() 10 0.1025 0.1082 0.1205 3.63% Castro::clean_state() 62 0.1136 0.1166 0.1197 3.60% Castro::initData() 1 0.04098 0.07589 0.1146 3.45% check_for_negative_density() 10 0.03767 0.06995 0.1093 3.29% Castro::do_old_sources() 10 0.0903 0.09659 0.1051 3.16% Castro::estTimeStep() 21 0.03036 0.06776 0.1045 3.15% Amr::FinalizeInit() 1 0.02654 0.06632 0.1007 3.03% FabArray::ParallelCopy_finish() 41 0.0368 0.04938 0.08845 2.66% amrex::Copy() 193 0.06186 0.07781 0.08663 2.61% Castro::computeInitialDt() 2 0.002146 0.04204 0.07637 2.30% Castro::initialize_advance() 10 0.05424 0.06839 0.07316 2.20% FabArray::setVal() 143 0.05477 0.06575 0.07105 2.14% Castro::do_new_sources() 10 0.0606 0.06391 0.0696 2.09% Castro::computeTemp() 63 0.06182 0.0641 0.06725 2.02% Castro::normalize_species() 62 0.04607 0.04717 0.05185 1.56% Castro::reset_internal_energy(MultiFab) 63 0.04424 0.04607 0.04863 1.46% Castro::reset_internal_energy(Fab) 1008 0.04394 0.04578 0.04833 1.45% FabArray::ParallelCopy_nowait() 41 0.03607 0.04138 0.04801 1.44% StateDataPhysBCFunct::() 41 0.03067 0.03214 0.03449 1.04% StateData::FillBoundary(geom) 41 0.03056 0.03203 0.03439 1.03% Castro::construct_new_source() 50 0.02902 0.03066 0.03296 0.99% Gravity::interpolate_monopole_grav() 21 0.02651 0.02696 0.02734 0.82% Castro::construct_new_gravity_source() 10 0.02322 0.0246 0.02669 0.80% Castro::post_init() 1 0.02352 0.02379 0.02393 0.72% Amr::writePlotFile() 2 0.02241 0.02251 0.02293 0.69% Castro::finalize_do_advance() 10 0.01283 0.01825 0.02222 0.67% Castro::post_timestep() 10 0.01548 0.01604 0.01677 0.50% Castro::apply_source_to_state() 20 0.01051 0.01246 0.01371 0.41% FabArray::Saxpy() 20 0.01046 0.01241 0.01365 0.41% Castro::check_for_nan() 20 0.01051 0.01138 0.01238 0.37% MultiFab::contains_nan() 20 0.01048 0.01135 0.01235 0.37% VisMF::Write(FabArray) 2 0.008734 0.009753 0.01235 0.37% Castro::Castro() 1 0.01076 0.01136 0.01233 0.37% FabArray::setDomainBndry() 41 0.007178 0.00961 0.01112 0.33% Castro::construct_old_source() 50 0.007026 0.009634 0.01023 0.31% Castro::construct_old_gravity_source() 10 0.006979 0.009569 0.01016 0.31% Castro::computeNewDt() 9 0.008655 0.008668 0.008678 0.26% Castro::initMFs() 1 0.006824 0.007121 0.008201 0.25% Other 261 0.02607 0.02953 0.03299 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6755 KiB 6761 KiB 6763 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4557 KiB 4565 KiB 4586 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 222 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2802 KiB 2805 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 240 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized