Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:25 UTC on 2025-04-22. Successfully read inputs file ... Castro git describe: 25.04-13-g17d0a8f7a AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-2-gd16f2b52 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015947812 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.374409868 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.36856697 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.383362408 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.392246856 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368977951 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.371646141 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.378320739 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.374916228 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.393785822 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.380155454 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01268698 seconds Ending run at 05:19:29 UTC on 2025-04-22. Run time = 4.001821585 Run time without initialization = 3.806778792 Average number of zones advanced per microsecond: 0.689 Average number of zones advanced per microsecond per rank: 0.086 TinyProfiler total time across processes [min...avg...max]: 3.9966 ... 4.0000 ... 4.0023 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2807 2.4928 2.7023 67.52% check_for_negative_density() 10 0.03171 0.2463 0.4623 11.55% Gravity::make_radial_gravity() 21 0.3027 0.3188 0.3357 8.39% Castro::estTimeStep() 21 0.02633 0.07983 0.1224 3.06% Castro::initData() 1 0.03877 0.07456 0.1214 3.03% amrex::Copy() 193 0.1017 0.1114 0.1206 3.01% FabArray::setVal() 143 0.09512 0.0964 0.09949 2.49% FabArray::ParallelCopy_nowait() 41 0.06009 0.06253 0.06563 1.64% FillPatchIterator::Initialize 41 0.04641 0.05255 0.05975 1.49% FabArray::ParallelCopy_finish() 41 0.04588 0.05394 0.05865 1.47% Castro::normalize_species() 62 0.04704 0.05018 0.0586 1.46% Castro::reset_internal_energy(Fab) 1008 0.0485 0.0507 0.05276 1.32% StateData::FillBoundary(geom) 41 0.03542 0.03874 0.04134 1.03% Castro::construct_new_gravity_source() 10 0.02915 0.03193 0.03533 0.88% Castro::initialize_do_advance() 10 0.02233 0.02598 0.02971 0.74% Gravity::interpolate_monopole_grav() 21 0.0267 0.02703 0.02778 0.69% Castro::computeTemp() 63 0.01886 0.02001 0.02095 0.52% FabArray::Saxpy() 20 0.01628 0.01841 0.02003 0.50% FabArray::setDomainBndry() 41 0.0157 0.01713 0.01836 0.46% Castro::initialize_advance() 10 0.01421 0.01573 0.01772 0.44% MultiFab::contains_nan() 20 0.01294 0.01464 0.01631 0.41% Castro::construct_old_gravity_source() 10 0.01445 0.01498 0.01546 0.39% VisMF::Write(FabArray) 2 0.009898 0.01166 0.0152 0.38% Amr::writePlotFile() 2 0.009058 0.01278 0.0148 0.37% Castro::initMFs() 1 0.006375 0.007588 0.009931 0.25% Castro::construct_new_source() 50 0.007506 0.008232 0.009092 0.23% StateData::define() 4 0.005256 0.006182 0.008118 0.20% main() 1 0.006579 0.00702 0.007341 0.18% Gravity::get_new_grav_vector() 11 0.003727 0.004803 0.005706 0.14% Gravity::get_old_grav_vector() 10 0.002705 0.002993 0.003245 0.08% Amr::coarseTimeStep() 10 0.0008713 0.002409 0.00324 0.08% Castro::finalize_do_advance() 10 0.001321 0.001378 0.001476 0.04% AmrLevel::FillPatch() 41 0.0009197 0.001057 0.001138 0.03% Amr::timeStep() 10 0.0001424 0.0002141 0.000482 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003094 0.0003263 0.0003623 0.01% Castro::clean_state() 62 0.0001805 0.0002056 0.000244 0.01% Castro::do_advance_ctu() 10 0.0001905 0.0002109 0.0002268 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001362 0.0001482 0.0001553 0.00% StateDataPhysBCFunct::() 41 0.0001199 0.0001331 0.0001512 0.00% Castro::do_old_sources() 10 9.682e-05 0.0001268 0.0001454 0.00% FabArray::ParallelCopy() 41 0.0001141 0.0001269 0.0001394 0.00% Castro::construct_old_source() 50 8.376e-05 0.0001004 0.0001181 0.00% Amr::FinalizeInit() 1 4.117e-06 1.773e-05 0.0001088 0.00% FillPatchSingleLevel 41 7.97e-05 8.913e-05 9.59e-05 0.00% Castro::apply_source_to_state() 20 5.443e-05 6.745e-05 8.842e-05 0.00% Castro::do_new_sources() 10 6.112e-05 7.304e-05 8.337e-05 0.00% Castro::subcycle_advance_ctu() 10 5.248e-05 6.626e-05 7.855e-05 0.00% Castro::advance() 10 5.444e-05 6.37e-05 7.599e-05 0.00% Castro::Castro() 1 4.694e-05 5.863e-05 7.282e-05 0.00% Castro::expand_state() 10 3.405e-05 4.674e-05 6.848e-05 0.00% Castro::construct_old_gravity() 10 4.504e-05 5.193e-05 6.717e-05 0.00% Castro::construct_new_gravity() 10 3.052e-05 3.737e-05 5.277e-05 0.00% Amr::defBaseLevel() 1 3.683e-05 4.21e-05 4.85e-05 0.00% Castro::check_for_nan() 20 2.865e-05 3.237e-05 3.812e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.926e-06 1.274e-05 2.297e-05 0.00% Castro::post_timestep() 10 1.368e-05 1.74e-05 2.2e-05 0.00% Castro::post_init() 1 1.318e-05 1.54e-05 1.906e-05 0.00% Castro::computeNewDt() 9 9.77e-06 1.094e-05 1.245e-05 0.00% Amr::InitializeInit() 1 2.754e-06 3.517e-06 6.688e-06 0.00% Castro::computeInitialDt() 2 3.374e-06 3.729e-06 4.255e-06 0.00% Amr::initialInit() 1 1.765e-06 2.194e-06 3.518e-06 0.00% Amr::init() 1 1.556e-06 2.089e-06 2.907e-06 0.00% Other 256 0.01179 0.01688 0.02018 0.50% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.997 4 4.002 100.00% Amr::coarseTimeStep() 10 3.787 3.787 3.787 94.62% Amr::timeStep() 10 3.773 3.774 3.775 94.33% Castro::advance() 10 3.757 3.757 3.757 93.88% Castro::subcycle_advance_ctu() 10 3.65 3.654 3.657 91.38% Castro::do_advance_ctu() 10 3.65 3.654 3.657 91.37% Castro::construct_ctu_hydro_source() 10 2.759 2.763 2.772 69.26% check_for_negative_density() 10 0.03171 0.2463 0.4623 11.55% Gravity::make_radial_gravity() 21 0.3242 0.341 0.3583 8.95% AmrLevel::FillPatch() 41 0.2507 0.2719 0.2896 7.24% Castro::initialize_do_advance() 10 0.2044 0.2227 0.2374 5.93% FillPatchIterator::Initialize 41 0.2113 0.2255 0.2364 5.91% Gravity::get_new_grav_vector() 11 0.2281 0.2298 0.2321 5.80% Castro::construct_old_gravity() 10 0.198 0.2086 0.2223 5.56% Gravity::get_old_grav_vector() 10 0.1971 0.2078 0.2216 5.54% Castro::construct_new_gravity() 10 0.2058 0.2072 0.209 5.22% Amr::init() 1 0.1898 0.193 0.1947 4.86% Amr::initialInit() 1 0.1737 0.1769 0.1786 4.46% Castro::expand_state() 10 0.1336 0.1528 0.1696 4.24% FillPatchIterator::FillFromLevel0() 41 0.1492 0.1558 0.1603 4.01% FillPatchSingleLevel 41 0.149 0.1557 0.1602 4.00% Amr::InitializeInit() 1 0.06276 0.09914 0.1472 3.68% Amr::defBaseLevel() 1 0.06276 0.09913 0.1472 3.68% Castro::clean_state() 62 0.1221 0.1276 0.1369 3.42% Castro::do_old_sources() 10 0.1281 0.1333 0.1366 3.41% Castro::initData() 1 0.04273 0.07844 0.125 3.12% FabArray::ParallelCopy() 41 0.1076 0.1167 0.1228 3.07% Castro::estTimeStep() 21 0.02633 0.07983 0.1224 3.06% amrex::Copy() 193 0.1017 0.1114 0.1206 3.01% Amr::FinalizeInit() 1 0.02647 0.07772 0.1159 2.89% Castro::initialize_advance() 10 0.09464 0.09804 0.1021 2.55% FabArray::setVal() 143 0.09512 0.0964 0.09949 2.49% Castro::computeInitialDt() 2 0.002169 0.05342 0.09154 2.29% Castro::do_new_sources() 10 0.07562 0.07988 0.08505 2.13% Castro::computeTemp() 63 0.06768 0.07103 0.07323 1.83% FabArray::ParallelCopy_nowait() 41 0.0602 0.06265 0.06574 1.64% FabArray::ParallelCopy_finish() 41 0.04588 0.05394 0.05865 1.47% Castro::normalize_species() 62 0.04704 0.05018 0.0586 1.46% Castro::reset_internal_energy(MultiFab) 63 0.04882 0.05102 0.05309 1.33% Castro::reset_internal_energy(Fab) 1008 0.0485 0.0507 0.05276 1.32% Castro::construct_new_source() 50 0.03665 0.04017 0.04412 1.10% StateDataPhysBCFunct::() 41 0.03554 0.03887 0.04147 1.04% StateData::FillBoundary(geom) 41 0.03542 0.03874 0.04134 1.03% Castro::construct_new_gravity_source() 10 0.02915 0.03193 0.03533 0.88% Amr::writePlotFile() 2 0.02882 0.02888 0.02915 0.73% Gravity::interpolate_monopole_grav() 21 0.0267 0.02703 0.02778 0.69% Castro::post_init() 1 0.02335 0.0237 0.02395 0.60% Castro::finalize_do_advance() 10 0.01171 0.01832 0.02278 0.57% Castro::apply_source_to_state() 20 0.01633 0.01848 0.02012 0.50% FabArray::Saxpy() 20 0.01628 0.01841 0.02003 0.50% FabArray::setDomainBndry() 41 0.0157 0.01713 0.01836 0.46% Castro::post_timestep() 10 0.01583 0.0166 0.01798 0.45% Castro::check_for_nan() 20 0.01298 0.01468 0.01634 0.41% MultiFab::contains_nan() 20 0.01294 0.01464 0.01631 0.41% Castro::construct_old_source() 50 0.01454 0.01509 0.01558 0.39% Castro::construct_old_gravity_source() 10 0.01445 0.01498 0.01546 0.39% VisMF::Write(FabArray) 2 0.009898 0.01166 0.0152 0.38% Castro::Castro() 1 0.00971 0.01122 0.01399 0.35% Castro::initMFs() 1 0.006375 0.007588 0.009931 0.25% Castro::computeNewDt() 9 0.009451 0.00947 0.00949 0.24% AmrLevel::AmrLevel(dm) 1 0.005265 0.006195 0.008141 0.20% StateData::define() 4 0.005256 0.006182 0.008118 0.20% Other 256 0.01823 0.02704 0.03276 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8663 KiB 8666 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6780 KiB 6789 KiB 6795 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7125 KiB 7135 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4563 KiB 4569 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 234 KiB 259 KiB 280 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2817 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 206 KiB 217 KiB 228 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 45 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 66 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized