Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:43 UTC on 2025-04-23. Successfully read inputs file ... Castro git describe: 25.04-13-g17d0a8f7a AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-3-g7289474a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020205685 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.427513787 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.394065179 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.381996695 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.389617465 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.3737981 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.369850154 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.373032019 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.370516574 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.374093611 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.373750251 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012706389 seconds Ending run at 05:18:47 UTC on 2025-04-23. Run time = 4.034575503 Run time without initialization = 3.848636201 Average number of zones advanced per microsecond: 0.681 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.0335 ... 4.0342 ... 4.0346 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3607 2.5571 2.7388 67.88% check_for_negative_density() 10 0.006014 0.1919 0.3938 9.76% Gravity::make_radial_gravity() 21 0.2891 0.306 0.3257 8.07% amrex::Copy() 193 0.1045 0.122 0.1357 3.36% FabArray::setVal() 143 0.0965 0.1048 0.1092 2.71% Castro::initData() 1 0.03938 0.07216 0.1029 2.55% FabArray::ParallelCopy_finish() 41 0.05616 0.06605 0.09354 2.32% Castro::estTimeStep() 21 0.02413 0.05774 0.08616 2.14% FabArray::ParallelCopy_nowait() 41 0.05918 0.06566 0.07056 1.75% FillPatchIterator::Initialize 41 0.04704 0.0564 0.06305 1.56% Castro::normalize_species() 62 0.04955 0.054 0.05962 1.48% Castro::reset_internal_energy(Fab) 1008 0.04782 0.05194 0.0538 1.33% StateData::FillBoundary(geom) 41 0.03705 0.04091 0.0473 1.17% Castro::construct_new_gravity_source() 10 0.02948 0.03256 0.03538 0.88% Castro::initialize_do_advance() 10 0.02388 0.02718 0.03042 0.75% Gravity::interpolate_monopole_grav() 21 0.02664 0.02692 0.02729 0.68% Castro::computeTemp() 63 0.01869 0.02047 0.02204 0.55% FabArray::Saxpy() 20 0.01837 0.02031 0.02192 0.54% FabArray::setDomainBndry() 41 0.01703 0.01906 0.02027 0.50% Amr::writePlotFile() 2 0.01062 0.01492 0.01939 0.48% Castro::initialize_advance() 10 0.01545 0.01687 0.01756 0.44% Castro::construct_old_gravity_source() 10 0.01512 0.01661 0.0172 0.43% VisMF::Write(FabArray) 2 0.009479 0.01285 0.01686 0.42% MultiFab::contains_nan() 20 0.01289 0.01493 0.01621 0.40% Castro::initMFs() 1 0.008865 0.009065 0.009946 0.25% Castro::construct_new_source() 50 0.007461 0.008684 0.009854 0.24% Castro::enforce_min_density() 62 0.006781 0.007428 0.00782 0.19% main() 1 0.006669 0.007014 0.007231 0.18% Gravity::get_new_grav_vector() 11 0.004236 0.005507 0.006406 0.16% Amr::coarseTimeStep() 10 0.001034 0.002538 0.004655 0.12% Gravity::get_old_grav_vector() 10 0.002671 0.003215 0.003624 0.09% Castro::finalize_do_advance() 10 0.001268 0.001294 0.00133 0.03% AmrLevel::FillPatch() 41 0.000974 0.001058 0.00116 0.03% Castro::reset_internal_energy(MultiFab) 63 0.000337 0.0003487 0.0003663 0.01% Amr::timeStep() 10 0.0001242 0.0001947 0.0003386 0.01% Castro::do_advance_ctu() 10 0.0001838 0.0002149 0.0002671 0.01% Castro::clean_state() 62 0.0001972 0.0002201 0.0002456 0.01% Castro::do_old_sources() 10 9.177e-05 0.0001337 0.0001648 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001422 0.0001492 0.000163 0.00% Castro::Castro() 1 0.0001135 0.0001303 0.0001509 0.00% FabArray::ParallelCopy() 41 0.0001159 0.0001273 0.0001456 0.00% StateDataPhysBCFunct::() 41 0.000124 0.0001354 0.000143 0.00% Castro::construct_old_source() 50 8.64e-05 0.0001047 0.0001192 0.00% Amr::FinalizeInit() 1 4.931e-06 1.919e-05 0.000106 0.00% FillPatchSingleLevel 41 8.556e-05 9.442e-05 0.0001007 0.00% Castro::do_new_sources() 10 6.844e-05 7.782e-05 9.864e-05 0.00% Castro::subcycle_advance_ctu() 10 5.691e-05 6.543e-05 8.808e-05 0.00% Castro::apply_source_to_state() 20 5.654e-05 7.336e-05 8.616e-05 0.00% Castro::expand_state() 10 3.897e-05 5.104e-05 7.998e-05 0.00% Castro::advance() 10 5.342e-05 6.348e-05 7.252e-05 0.00% Amr::defBaseLevel() 1 4.169e-05 5.467e-05 6.933e-05 0.00% Castro::construct_old_gravity() 10 4.23e-05 4.834e-05 5.514e-05 0.00% Castro::construct_new_gravity() 10 3.218e-05 3.779e-05 4.467e-05 0.00% Castro::check_for_nan() 20 2.992e-05 3.408e-05 4.043e-05 0.00% Castro::post_timestep() 10 1.442e-05 2.148e-05 3.296e-05 0.00% Castro::post_init() 1 1.596e-05 1.952e-05 3.235e-05 0.00% Amr::initialInit() 1 1.74e-06 5.284e-06 2.717e-05 0.00% Castro::computeNewDt() 9 9.784e-06 1.061e-05 1.228e-05 0.00% Castro::computeInitialDt() 2 4.378e-06 5.418e-06 5.97e-06 0.00% Amr::InitializeInit() 1 2.198e-06 3.768e-06 5.147e-06 0.00% Amr::init() 1 2.122e-06 2.625e-06 3.448e-06 0.00% Other 199 0.01384 0.01655 0.01892 0.47% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.033 4.034 4.035 100.00% Amr::coarseTimeStep() 10 3.829 3.829 3.829 94.90% Amr::timeStep() 10 3.814 3.816 3.818 94.63% Castro::advance() 10 3.798 3.799 3.799 94.17% Castro::subcycle_advance_ctu() 10 3.685 3.69 3.7 91.70% Castro::do_advance_ctu() 10 3.685 3.69 3.7 91.70% Castro::construct_ctu_hydro_source() 10 2.766 2.773 2.779 68.88% check_for_negative_density() 10 0.006014 0.1919 0.3938 9.76% Gravity::make_radial_gravity() 21 0.3149 0.3315 0.3506 8.69% AmrLevel::FillPatch() 41 0.2767 0.2995 0.3198 7.93% FillPatchIterator::Initialize 41 0.2348 0.2487 0.26 6.44% Castro::initialize_do_advance() 10 0.2259 0.2409 0.2523 6.25% Gravity::get_new_grav_vector() 11 0.2294 0.232 0.2345 5.81% Castro::construct_old_gravity() 10 0.1938 0.2053 0.2201 5.45% Gravity::get_old_grav_vector() 10 0.1927 0.2044 0.2193 5.43% Castro::construct_new_gravity() 10 0.2013 0.2039 0.2062 5.11% FillPatchIterator::FillFromLevel0() 41 0.165 0.1732 0.1922 4.76% FillPatchSingleLevel 41 0.1649 0.1731 0.192 4.76% Amr::init() 1 0.1847 0.1854 0.1856 4.60% Castro::expand_state() 10 0.1488 0.1677 0.1821 4.51% Amr::initialInit() 1 0.1644 0.165 0.1652 4.09% FabArray::ParallelCopy() 41 0.1253 0.132 0.153 3.79% Castro::do_old_sources() 10 0.1435 0.1451 0.1473 3.65% Castro::clean_state() 62 0.1265 0.1335 0.1398 3.47% amrex::Copy() 193 0.1045 0.122 0.1357 3.36% Amr::InitializeInit() 1 0.06924 0.1022 0.133 3.30% Amr::defBaseLevel() 1 0.06924 0.1022 0.133 3.30% FabArray::setVal() 143 0.0965 0.1048 0.1092 2.71% Castro::initialize_advance() 10 0.09395 0.1041 0.1086 2.69% Castro::initData() 1 0.0447 0.07722 0.1083 2.68% Amr::FinalizeInit() 1 0.03216 0.06281 0.09583 2.38% FabArray::ParallelCopy_finish() 41 0.05616 0.06605 0.09354 2.32% Castro::do_new_sources() 10 0.07681 0.08198 0.08656 2.15% Castro::estTimeStep() 21 0.02413 0.05774 0.08616 2.14% Castro::computeTemp() 63 0.06684 0.07276 0.07618 1.89% FabArray::ParallelCopy_nowait() 41 0.0593 0.06578 0.07066 1.75% Castro::computeInitialDt() 2 0.002287 0.03292 0.06591 1.63% Castro::normalize_species() 62 0.04955 0.054 0.05962 1.48% Castro::reset_internal_energy(MultiFab) 63 0.04816 0.05229 0.05414 1.34% Castro::reset_internal_energy(Fab) 1008 0.04782 0.05194 0.0538 1.33% StateDataPhysBCFunct::() 41 0.03718 0.04105 0.04744 1.18% StateData::FillBoundary(geom) 41 0.03705 0.04091 0.0473 1.17% Castro::construct_new_source() 50 0.03694 0.04125 0.04524 1.12% Castro::construct_new_gravity_source() 10 0.02948 0.03256 0.03538 0.88% Amr::writePlotFile() 2 0.03313 0.03319 0.03326 0.82% Castro::post_init() 1 0.02906 0.02928 0.02949 0.73% Gravity::interpolate_monopole_grav() 21 0.02664 0.02692 0.02729 0.68% Castro::finalize_do_advance() 10 0.01144 0.01749 0.02411 0.60% Castro::apply_source_to_state() 20 0.01843 0.02038 0.02201 0.55% FabArray::Saxpy() 20 0.01837 0.02031 0.02192 0.54% FabArray::setDomainBndry() 41 0.01703 0.01906 0.02027 0.50% Castro::post_timestep() 10 0.01585 0.01745 0.01859 0.46% Castro::Castro() 1 0.01639 0.01683 0.01799 0.45% Castro::construct_old_source() 50 0.01522 0.01671 0.0173 0.43% Castro::construct_old_gravity_source() 10 0.01512 0.01661 0.0172 0.43% VisMF::Write(FabArray) 2 0.009479 0.01285 0.01686 0.42% Castro::check_for_nan() 20 0.01293 0.01497 0.01624 0.40% MultiFab::contains_nan() 20 0.01289 0.01493 0.01621 0.40% Castro::initMFs() 1 0.008865 0.009065 0.009946 0.25% Castro::computeNewDt() 9 0.00863 0.008642 0.008664 0.21% Castro::enforce_min_density() 62 0.006781 0.007428 0.00782 0.19% Other 199 0.02688 0.03133 0.03472 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 29 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8665 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6798 KiB 6803 KiB 6808 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4569 KiB 4583 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 257 KiB 282 KiB 303 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 20 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2822 KiB 2824 KiB 2825 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 199 KiB 209 KiB 221 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 47 KiB 50 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 65 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized