Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:41 UTC on 2025-04-24. Successfully read inputs file ... Castro git describe: 25.04-15-ge3bab46d6 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-3-g7289474a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014509889 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.359954865 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.362670439 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325633004 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.33590413 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.385983256 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.341575252 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.345296113 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.347713187 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.339838729 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.31830402 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007932078 seconds Ending run at 05:18:45 UTC on 2025-04-24. Run time = 3.645367037 Run time without initialization = 3.476494484 Average number of zones advanced per microsecond: 0.754 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.6426 ... 3.6444 ... 3.6454 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2741 2.3310 2.4486 67.17% Gravity::make_radial_gravity() 21 0.3037 0.313 0.327 8.97% check_for_negative_density() 10 0.06518 0.1823 0.2457 6.74% FabArray::ParallelCopy_finish() 41 0.0792 0.09415 0.1454 3.99% Castro::estTimeStep() 21 0.04051 0.07028 0.1074 2.95% Castro::initData() 1 0.03733 0.07426 0.1019 2.79% amrex::Copy() 193 0.0572 0.08134 0.08895 2.44% FabArray::setVal() 143 0.06031 0.07322 0.07842 2.15% Castro::normalize_species() 62 0.04666 0.05007 0.05874 1.61% Castro::reset_internal_energy(Fab) 1008 0.04499 0.04798 0.04988 1.37% FabArray::ParallelCopy_nowait() 41 0.03511 0.04362 0.04678 1.28% FillPatchIterator::Initialize 41 0.03192 0.03813 0.04231 1.16% StateData::FillBoundary(geom) 41 0.02907 0.03298 0.03653 1.00% Castro::construct_new_gravity_source() 10 0.02147 0.02446 0.02926 0.80% Gravity::interpolate_monopole_grav() 21 0.0264 0.02701 0.02783 0.76% Castro::initialize_do_advance() 10 0.009668 0.01729 0.01976 0.54% Castro::computeTemp() 63 0.01816 0.01892 0.01969 0.54% FabArray::Saxpy() 20 0.008632 0.01245 0.01414 0.39% VisMF::Write(FabArray) 2 0.009142 0.009803 0.01349 0.37% MultiFab::contains_nan() 20 0.01088 0.01151 0.01348 0.37% FabArray::setDomainBndry() 41 0.006101 0.01037 0.01245 0.34% Castro::initialize_advance() 10 0.005148 0.01035 0.01181 0.32% Castro::construct_new_source() 50 0.005136 0.006649 0.01069 0.29% Amr::writePlotFile() 2 0.007416 0.009841 0.01059 0.29% Castro::construct_old_gravity_source() 10 0.005469 0.008671 0.01021 0.28% Castro::initMFs() 1 0.006455 0.007162 0.007446 0.20% Amr::coarseTimeStep() 10 0.002672 0.004048 0.005583 0.15% main() 1 0.003058 0.004594 0.004911 0.13% Gravity::get_new_grav_vector() 11 0.002776 0.003582 0.004062 0.11% Gravity::get_old_grav_vector() 10 0.001405 0.00211 0.002726 0.07% Castro::finalize_do_advance() 10 0.0006023 0.001098 0.001204 0.03% AmrLevel::FillPatch() 41 0.0007706 0.0009178 0.001007 0.03% Amr::timeStep() 10 0.0001366 0.0002185 0.000441 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002854 0.0002986 0.0003213 0.01% Castro::do_advance_ctu() 10 0.0001691 0.0001817 0.0001952 0.01% Castro::clean_state() 62 0.0001521 0.0001654 0.0001767 0.00% StateDataPhysBCFunct::() 41 9.919e-05 0.0001151 0.0001569 0.00% FillPatchIterator::FillFromLevel0() 41 9.723e-05 0.0001109 0.0001263 0.00% Castro::do_old_sources() 10 7.333e-05 9.605e-05 0.0001144 0.00% Castro::do_new_sources() 10 4.601e-05 7.091e-05 0.0001108 0.00% FabArray::ParallelCopy() 41 8.652e-05 9.242e-05 0.0001014 0.00% Amr::FinalizeInit() 1 3.512e-06 1.56e-05 9.135e-05 0.00% Castro::construct_old_source() 50 4.349e-05 6.567e-05 8.617e-05 0.00% Castro::Castro() 1 5.238e-05 6.543e-05 7.546e-05 0.00% FillPatchSingleLevel 41 6.382e-05 6.845e-05 7.273e-05 0.00% Castro::advance() 10 3.663e-05 5.201e-05 6.54e-05 0.00% Castro::subcycle_advance_ctu() 10 3.863e-05 5.091e-05 5.964e-05 0.00% Castro::construct_new_gravity() 10 3.236e-05 4.226e-05 5.787e-05 0.00% Castro::apply_source_to_state() 20 3.656e-05 4.699e-05 5.55e-05 0.00% Amr::defBaseLevel() 1 3.782e-05 4.434e-05 5.019e-05 0.00% Castro::construct_old_gravity() 10 3.642e-05 4.248e-05 4.899e-05 0.00% Castro::expand_state() 10 2.005e-05 2.706e-05 3.87e-05 0.00% Castro::check_for_nan() 20 2.433e-05 2.829e-05 3.126e-05 0.00% Castro::post_init() 1 1.402e-05 1.783e-05 2.813e-05 0.00% Castro::post_timestep() 10 1.407e-05 2.033e-05 2.353e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.083e-06 1.175e-05 1.566e-05 0.00% Castro::computeNewDt() 9 1.018e-05 1.102e-05 1.19e-05 0.00% Amr::InitializeInit() 1 2.748e-06 3.822e-06 8.766e-06 0.00% Amr::initialInit() 1 1.653e-06 2.772e-06 7.924e-06 0.00% Amr::init() 1 1.619e-06 2.476e-06 5.814e-06 0.00% Castro::computeInitialDt() 2 2.874e-06 4.018e-06 5.547e-06 0.00% Other 260 0.01507 0.01915 0.02195 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.643 3.644 3.645 100.00% Amr::coarseTimeStep() 10 3.464 3.464 3.464 95.01% Amr::timeStep() 10 3.448 3.45 3.451 94.67% Castro::advance() 10 3.431 3.432 3.433 94.16% Castro::subcycle_advance_ctu() 10 3.347 3.352 3.368 92.38% Castro::do_advance_ctu() 10 3.347 3.352 3.368 92.38% Castro::construct_ctu_hydro_source() 10 2.531 2.536 2.543 69.77% Gravity::make_radial_gravity() 21 0.322 0.3296 0.3401 9.33% AmrLevel::FillPatch() 41 0.2423 0.2525 0.2704 7.42% FillPatchIterator::Initialize 41 0.2095 0.2197 0.2481 6.81% check_for_negative_density() 10 0.06518 0.1823 0.2457 6.74% Gravity::get_new_grav_vector() 11 0.2123 0.2152 0.2169 5.95% Castro::construct_old_gravity() 10 0.1921 0.1999 0.2128 5.84% Gravity::get_old_grav_vector() 10 0.1912 0.199 0.2121 5.82% Castro::initialize_do_advance() 10 0.1968 0.2016 0.2104 5.77% FillPatchIterator::FillFromLevel0() 41 0.1582 0.1712 0.2101 5.76% FillPatchSingleLevel 41 0.1581 0.1711 0.21 5.76% Castro::construct_new_gravity() 10 0.1875 0.19 0.1915 5.25% FabArray::ParallelCopy() 41 0.1244 0.138 0.1807 4.96% Amr::init() 1 0.1672 0.1678 0.1686 4.62% Castro::expand_state() 10 0.1393 0.1469 0.163 4.47% Amr::initialInit() 1 0.1525 0.1534 0.1543 4.23% FabArray::ParallelCopy_finish() 41 0.0792 0.09415 0.1454 3.99% Castro::clean_state() 62 0.1183 0.1225 0.1268 3.48% Amr::InitializeInit() 1 0.05971 0.09632 0.1242 3.41% Amr::defBaseLevel() 1 0.05971 0.09631 0.1242 3.41% Castro::do_old_sources() 10 0.09649 0.1104 0.1139 3.12% Castro::estTimeStep() 21 0.04051 0.07028 0.1074 2.95% Castro::initData() 1 0.04119 0.07832 0.1058 2.90% Amr::FinalizeInit() 1 0.02911 0.0571 0.09348 2.56% amrex::Copy() 193 0.0572 0.08134 0.08895 2.44% Castro::initialize_advance() 10 0.05952 0.07542 0.08078 2.22% FabArray::setVal() 143 0.06031 0.07322 0.07842 2.15% Castro::do_new_sources() 10 0.05683 0.06608 0.07721 2.12% Castro::computeTemp() 63 0.06347 0.06719 0.06987 1.92% Castro::computeInitialDt() 2 0.002182 0.03022 0.06656 1.83% Castro::normalize_species() 62 0.04666 0.05007 0.05874 1.61% Castro::reset_internal_energy(MultiFab) 63 0.04531 0.04828 0.05018 1.38% Castro::reset_internal_energy(Fab) 1008 0.04499 0.04798 0.04988 1.37% FabArray::ParallelCopy_nowait() 41 0.0352 0.04371 0.04687 1.29% Castro::finalize_do_advance() 10 0.02093 0.03237 0.0424 1.16% StateDataPhysBCFunct::() 41 0.02923 0.03309 0.03663 1.00% StateData::FillBoundary(geom) 41 0.02907 0.03298 0.03653 1.00% Castro::construct_new_source() 50 0.0266 0.03111 0.03493 0.96% Castro::construct_new_gravity_source() 10 0.02147 0.02446 0.02926 0.80% Gravity::interpolate_monopole_grav() 21 0.0264 0.02701 0.02783 0.76% Castro::post_init() 1 0.02556 0.02617 0.02646 0.73% Amr::writePlotFile() 2 0.02233 0.02244 0.02276 0.62% Castro::post_timestep() 10 0.0161 0.01728 0.01828 0.50% Castro::apply_source_to_state() 20 0.00867 0.01249 0.0142 0.39% FabArray::Saxpy() 20 0.008632 0.01245 0.01414 0.39% Castro::check_for_nan() 20 0.01091 0.01154 0.01351 0.37% VisMF::Write(FabArray) 2 0.009142 0.009803 0.01349 0.37% MultiFab::contains_nan() 20 0.01088 0.01151 0.01348 0.37% FabArray::setDomainBndry() 41 0.006101 0.01037 0.01245 0.34% Castro::Castro() 1 0.009508 0.01117 0.01187 0.33% Castro::construct_old_source() 50 0.005513 0.008736 0.01028 0.28% Castro::construct_old_gravity_source() 10 0.005469 0.008671 0.01021 0.28% Castro::computeNewDt() 9 0.008796 0.008806 0.008818 0.24% Castro::initMFs() 1 0.006455 0.007162 0.007446 0.20% AmrLevel::AmrLevel(dm) 1 0.005562 0.00615 0.006709 0.18% Other 260 0.02065 0.02601 0.03014 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6805 KiB 6807 KiB 6809 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4588 KiB 4595 KiB 4613 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 256 KiB 268 KiB 292 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2821 KiB 2824 KiB 2825 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 230 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 55 KiB 61 KiB 81 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized