Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:00 UTC on 2025-04-25. Successfully read inputs file ... Castro git describe: 25.04-15-ge3bab46d6 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-3-g7289474a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014794211 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.369065795 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.363995221 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.366671614 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.388627441 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.360451259 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.362986536 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.406190421 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.380798862 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.376826537 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.374998004 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01198616 seconds Ending run at 05:19:04 UTC on 2025-04-25. Run time = 3.950634325 Run time without initialization = 3.772409591 Average number of zones advanced per microsecond: 0.695 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9477 ... 3.9495 ... 3.9507 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2889 2.4734 2.7049 68.47% check_for_negative_density() 10 0.04716 0.2724 0.4572 11.57% Gravity::make_radial_gravity() 21 0.2988 0.3103 0.3247 8.22% amrex::Copy() 193 0.1007 0.1074 0.1161 2.94% Castro::initData() 1 0.03702 0.07201 0.1145 2.90% Castro::estTimeStep() 21 0.03202 0.0704 0.1093 2.77% FabArray::setVal() 143 0.06793 0.08841 0.09433 2.39% FabArray::ParallelCopy_finish() 41 0.04367 0.05378 0.08455 2.14% FabArray::ParallelCopy_nowait() 41 0.0534 0.05729 0.06191 1.57% FillPatchIterator::Initialize 41 0.0454 0.04984 0.05451 1.38% Castro::reset_internal_energy(Fab) 1008 0.04593 0.04958 0.0527 1.33% Castro::normalize_species() 62 0.04639 0.04902 0.05236 1.33% StateData::FillBoundary(geom) 41 0.03499 0.03843 0.04437 1.12% Castro::construct_new_gravity_source() 10 0.02904 0.03102 0.03397 0.86% Gravity::interpolate_monopole_grav() 21 0.0268 0.02711 0.02788 0.71% Castro::initialize_do_advance() 10 0.02134 0.02449 0.02646 0.67% Castro::computeTemp() 63 0.01838 0.0198 0.02068 0.52% FabArray::Saxpy() 20 0.0146 0.01711 0.01905 0.48% FabArray::setDomainBndry() 41 0.01561 0.01681 0.01739 0.44% MultiFab::contains_nan() 20 0.01258 0.01417 0.01619 0.41% Castro::construct_old_gravity_source() 10 0.01068 0.01408 0.0151 0.38% VisMF::Write(FabArray) 2 0.01001 0.01137 0.01427 0.36% Castro::initialize_advance() 10 0.004541 0.01195 0.01361 0.34% Amr::writePlotFile() 2 0.008656 0.01177 0.01312 0.33% main() 1 0.006447 0.008402 0.009412 0.24% Castro::construct_new_source() 50 0.007134 0.007674 0.008473 0.21% Castro::enforce_min_density() 62 0.006575 0.006944 0.007385 0.19% Gravity::get_new_grav_vector() 11 0.004004 0.004992 0.005704 0.14% Gravity::get_old_grav_vector() 10 0.002716 0.003114 0.003677 0.09% Amr::coarseTimeStep() 10 0.0007808 0.001986 0.003121 0.08% Castro::finalize_do_advance() 10 0.001308 0.001366 0.001414 0.04% AmrLevel::FillPatch() 41 0.0008932 0.00107 0.001312 0.03% Amr::timeStep() 10 0.0001371 0.0002128 0.0005107 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003082 0.0003291 0.0003697 0.01% Castro::do_advance_ctu() 10 0.0001622 0.0002077 0.000273 0.01% Castro::clean_state() 62 0.000187 0.0002042 0.0002259 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001119 0.0001353 0.0001633 0.00% Castro::do_old_sources() 10 7.668e-05 0.0001238 0.000157 0.00% StateDataPhysBCFunct::() 41 0.0001162 0.0001235 0.0001279 0.00% FabArray::ParallelCopy() 41 9.983e-05 0.0001136 0.0001264 0.00% Castro::construct_old_source() 50 6.07e-05 8.948e-05 0.0001117 0.00% Castro::Castro() 1 5.005e-05 8.373e-05 0.0001065 0.00% Amr::FinalizeInit() 1 3.918e-06 1.541e-05 9.103e-05 0.00% FillPatchSingleLevel 41 7.015e-05 8.151e-05 8.856e-05 0.00% Castro::do_new_sources() 10 5.686e-05 7.015e-05 7.934e-05 0.00% Castro::subcycle_advance_ctu() 10 4.981e-05 6.37e-05 7.513e-05 0.00% Castro::advance() 10 4.333e-05 5.912e-05 7.306e-05 0.00% Castro::apply_source_to_state() 20 4.864e-05 5.859e-05 6.652e-05 0.00% Castro::construct_old_gravity() 10 3.741e-05 4.678e-05 5.464e-05 0.00% Castro::construct_new_gravity() 10 3.217e-05 3.884e-05 5.157e-05 0.00% Amr::defBaseLevel() 1 3.751e-05 4.181e-05 4.862e-05 0.00% Castro::expand_state() 10 2.848e-05 3.779e-05 4.814e-05 0.00% Castro::check_for_nan() 20 2.904e-05 3.274e-05 3.663e-05 0.00% Castro::post_timestep() 10 1.526e-05 1.942e-05 2.53e-05 0.00% Castro::computeNewDt() 9 9.455e-06 1.196e-05 2.081e-05 0.00% Castro::post_init() 1 1.49e-05 1.666e-05 1.953e-05 0.00% Amr::InitializeInit() 1 2.479e-06 3.59e-06 6.526e-06 0.00% Castro::computeInitialDt() 2 3.248e-06 3.783e-06 4.602e-06 0.00% Amr::init() 1 1.632e-06 2.132e-06 3.045e-06 0.00% Amr::initialInit() 1 1.404e-06 1.945e-06 2.414e-06 0.00% Other 200 0.01687 0.01974 0.02176 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.948 3.949 3.951 100.00% Amr::coarseTimeStep() 10 3.751 3.751 3.751 94.95% Amr::timeStep() 10 3.738 3.739 3.74 94.68% Castro::advance() 10 3.722 3.723 3.723 94.24% Castro::subcycle_advance_ctu() 10 3.625 3.632 3.656 92.55% Castro::do_advance_ctu() 10 3.625 3.631 3.656 92.55% Castro::construct_ctu_hydro_source() 10 2.764 2.769 2.776 70.26% check_for_negative_density() 10 0.04716 0.2724 0.4572 11.57% Gravity::make_radial_gravity() 21 0.32 0.3318 0.3462 8.76% AmrLevel::FillPatch() 41 0.2466 0.2635 0.2932 7.42% FillPatchIterator::Initialize 41 0.2035 0.2167 0.2475 6.26% Castro::initialize_do_advance() 10 0.2025 0.2168 0.2448 6.20% Gravity::get_new_grav_vector() 11 0.2249 0.2262 0.2273 5.75% Castro::construct_old_gravity() 10 0.1931 0.2016 0.2112 5.34% Gravity::get_old_grav_vector() 10 0.192 0.2007 0.2103 5.32% Castro::construct_new_gravity() 10 0.2025 0.2037 0.2046 5.18% Amr::init() 1 0.1768 0.1776 0.178 4.51% FillPatchIterator::FillFromLevel0() 41 0.1402 0.1501 0.1772 4.49% FillPatchSingleLevel 41 0.14 0.1499 0.1771 4.48% Castro::expand_state() 10 0.1343 0.1493 0.1767 4.47% Amr::initialInit() 1 0.1617 0.1627 0.1632 4.13% FabArray::ParallelCopy() 41 0.1024 0.1113 0.1393 3.52% Amr::InitializeInit() 1 0.05806 0.09353 0.1366 3.46% Amr::defBaseLevel() 1 0.05806 0.09352 0.1366 3.46% Castro::clean_state() 62 0.1192 0.125 0.1311 3.32% Castro::do_old_sources() 10 0.1219 0.1261 0.1287 3.26% Castro::initData() 1 0.04102 0.07582 0.1186 3.00% amrex::Copy() 193 0.1007 0.1074 0.1161 2.94% Castro::estTimeStep() 21 0.03202 0.0704 0.1093 2.77% Amr::FinalizeInit() 1 0.02592 0.06914 0.105 2.66% FabArray::setVal() 143 0.06793 0.08841 0.09433 2.39% Castro::initialize_advance() 10 0.06174 0.0864 0.0928 2.35% FabArray::ParallelCopy_finish() 41 0.04367 0.05378 0.08455 2.14% Castro::do_new_sources() 10 0.07302 0.07686 0.08186 2.07% Castro::computeInitialDt() 2 0.002123 0.04497 0.08069 2.04% Castro::computeTemp() 63 0.06463 0.06971 0.07339 1.86% FabArray::ParallelCopy_nowait() 41 0.05352 0.0574 0.06201 1.57% Castro::reset_internal_energy(MultiFab) 63 0.04625 0.04991 0.05305 1.34% Castro::reset_internal_energy(Fab) 1008 0.04593 0.04958 0.0527 1.33% Castro::normalize_species() 62 0.04639 0.04902 0.05236 1.33% StateDataPhysBCFunct::() 41 0.03511 0.03856 0.0445 1.13% StateData::FillBoundary(geom) 41 0.03499 0.03843 0.04437 1.12% Castro::construct_new_source() 50 0.03654 0.03869 0.04244 1.07% Castro::construct_new_gravity_source() 10 0.02904 0.03102 0.03397 0.86% Gravity::interpolate_monopole_grav() 21 0.0268 0.02711 0.02788 0.71% Amr::writePlotFile() 2 0.02689 0.02704 0.02738 0.69% Castro::post_init() 1 0.02342 0.0237 0.02389 0.60% Castro::finalize_do_advance() 10 0.01232 0.01805 0.02255 0.57% Castro::apply_source_to_state() 20 0.01466 0.01717 0.01912 0.48% FabArray::Saxpy() 20 0.0146 0.01711 0.01905 0.48% FabArray::setDomainBndry() 41 0.01561 0.01681 0.01739 0.44% Castro::post_timestep() 10 0.01544 0.01636 0.01713 0.43% Castro::check_for_nan() 20 0.01262 0.01421 0.01622 0.41% MultiFab::contains_nan() 20 0.01258 0.01417 0.01619 0.41% Castro::construct_old_source() 50 0.01075 0.01417 0.0152 0.38% Castro::construct_old_gravity_source() 10 0.01068 0.01408 0.0151 0.38% VisMF::Write(FabArray) 2 0.01001 0.01137 0.01427 0.36% Castro::Castro() 1 0.01034 0.01107 0.01173 0.30% Castro::computeNewDt() 9 0.008719 0.008761 0.008785 0.22% Castro::enforce_min_density() 62 0.006575 0.006944 0.007385 0.19% Other 200 0.02796 0.03255 0.03599 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 28 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8665 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6803 KiB 6810 KiB 6813 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7137 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4582 KiB 4593 KiB 4624 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 234 KiB 254 KiB 290 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2824 KiB 2826 KiB 2827 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 206 KiB 214 KiB 223 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 65 KiB 68 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized