Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:22 UTC on 2025-04-28. Successfully read inputs file ... Castro git describe: 25.04-16-gb3493c83e AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-3-g7289474a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020329403 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.422765871 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.388206016 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.368316089 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.38631038 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365025252 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.357954579 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.362252811 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.357213322 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.35762284 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.365835069 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012842947 seconds Ending run at 05:19:26 UTC on 2025-04-28. Run time = 3.936102166 Run time without initialization = 3.752030046 Average number of zones advanced per microsecond: 0.699 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9343 ... 3.9355 ... 3.9362 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2795 2.4995 2.6619 67.63% check_for_negative_density() 10 0.006844 0.1753 0.4007 10.18% Gravity::make_radial_gravity() 21 0.2942 0.3023 0.3176 8.07% amrex::Copy() 193 0.1117 0.1273 0.137 3.48% FabArray::setVal() 143 0.1031 0.106 0.1089 2.77% Castro::initData() 1 0.03807 0.07045 0.101 2.57% Castro::estTimeStep() 21 0.02045 0.05635 0.09366 2.38% FabArray::ParallelCopy_finish() 41 0.05043 0.05639 0.07132 1.81% FabArray::ParallelCopy_nowait() 41 0.05915 0.06304 0.0661 1.68% FillPatchIterator::Initialize 41 0.04573 0.05364 0.05957 1.51% Castro::normalize_species() 62 0.04609 0.04973 0.05549 1.41% Castro::reset_internal_energy(Fab) 1008 0.04672 0.05032 0.05167 1.31% StateData::FillBoundary(geom) 41 0.03473 0.03917 0.04372 1.11% Castro::construct_new_gravity_source() 10 0.02948 0.03254 0.03591 0.91% Castro::initialize_do_advance() 10 0.02359 0.02761 0.03284 0.83% Gravity::interpolate_monopole_grav() 21 0.02657 0.02697 0.02741 0.70% FabArray::Saxpy() 20 0.01784 0.01964 0.02124 0.54% Castro::computeTemp() 63 0.01863 0.01979 0.02106 0.53% FabArray::setDomainBndry() 41 0.01612 0.0187 0.01995 0.51% Castro::initialize_advance() 10 0.01682 0.0172 0.01791 0.45% Castro::construct_old_gravity_source() 10 0.01553 0.01665 0.01756 0.45% VisMF::Write(FabArray) 2 0.01222 0.01349 0.01699 0.43% MultiFab::contains_nan() 20 0.01266 0.01429 0.01575 0.40% Amr::writePlotFile() 2 0.01031 0.01411 0.01546 0.39% Castro::initMFs() 1 0.008678 0.009552 0.01153 0.29% Castro::construct_new_source() 50 0.007383 0.008562 0.009497 0.24% main() 1 0.006342 0.007013 0.007299 0.19% Gravity::get_new_grav_vector() 11 0.00427 0.005404 0.005956 0.15% Gravity::get_old_grav_vector() 10 0.002587 0.00341 0.003805 0.10% Amr::coarseTimeStep() 10 0.000772 0.001753 0.002478 0.06% AmrLevel::FillPatch() 41 0.001195 0.001278 0.001524 0.04% Castro::finalize_do_advance() 10 0.001263 0.001316 0.001358 0.03% Amr::timeStep() 10 0.0001468 0.0002272 0.0004634 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003083 0.0003299 0.0003557 0.01% Castro::do_advance_ctu() 10 0.0001839 0.0002173 0.0002555 0.01% Castro::clean_state() 62 0.0001925 0.0002096 0.0002289 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001405 0.0001517 0.0001592 0.00% Castro::Castro() 1 6.079e-05 0.0001154 0.0001585 0.00% Castro::do_old_sources() 10 0.0001027 0.0001285 0.0001505 0.00% StateDataPhysBCFunct::() 41 0.0001374 0.0001428 0.0001494 0.00% FabArray::ParallelCopy() 41 0.0001045 0.0001277 0.0001439 0.00% Castro::construct_old_source() 50 8.131e-05 0.0001048 0.0001271 0.00% FillPatchSingleLevel 41 8.332e-05 9.375e-05 0.0001039 0.00% Castro::apply_source_to_state() 20 6.64e-05 7.627e-05 0.0001006 0.00% Castro::advance() 10 5.833e-05 7.085e-05 9.073e-05 0.00% Castro::subcycle_advance_ctu() 10 6.235e-05 7.088e-05 8.772e-05 0.00% Amr::defBaseLevel() 1 4.376e-05 5.877e-05 8.66e-05 0.00% Castro::do_new_sources() 10 6.25e-05 7.451e-05 8.619e-05 0.00% Castro::construct_old_gravity() 10 4.157e-05 5.408e-05 7.193e-05 0.00% Amr::FinalizeInit() 1 4.719e-06 1.367e-05 7.121e-05 0.00% Castro::expand_state() 10 3.72e-05 4.645e-05 6.034e-05 0.00% Castro::construct_new_gravity() 10 3.328e-05 4.086e-05 5.068e-05 0.00% Castro::check_for_nan() 20 2.73e-05 3.275e-05 4.15e-05 0.00% Castro::post_timestep() 10 1.407e-05 1.921e-05 2.371e-05 0.00% Castro::post_init() 1 1.663e-05 1.846e-05 2.23e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.198e-06 1.237e-05 1.528e-05 0.00% Amr::init() 1 1.884e-06 4.993e-06 1.39e-05 0.00% Castro::computeNewDt() 9 9.427e-06 1.074e-05 1.193e-05 0.00% Castro::computeInitialDt() 2 4.47e-06 5.044e-06 5.522e-06 0.00% Amr::InitializeInit() 1 2.675e-06 3.851e-06 5.249e-06 0.00% Amr::initialInit() 1 1.812e-06 2.276e-06 3.234e-06 0.00% Other 260 0.02071 0.0243 0.02654 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.934 3.936 3.936 100.00% Amr::coarseTimeStep() 10 3.732 3.732 3.732 94.81% Amr::timeStep() 10 3.72 3.72 3.721 94.54% Castro::advance() 10 3.703 3.704 3.704 94.10% Castro::subcycle_advance_ctu() 10 3.591 3.594 3.596 91.36% Castro::do_advance_ctu() 10 3.591 3.594 3.596 91.36% Castro::construct_ctu_hydro_source() 10 2.693 2.698 2.704 68.69% check_for_negative_density() 10 0.006844 0.1753 0.4007 10.18% Gravity::make_radial_gravity() 21 0.3224 0.3304 0.343 8.71% AmrLevel::FillPatch() 41 0.2652 0.2855 0.3014 7.66% FillPatchIterator::Initialize 41 0.2184 0.2316 0.2427 6.17% Castro::initialize_do_advance() 10 0.2175 0.2296 0.2366 6.01% Gravity::get_new_grav_vector() 11 0.2279 0.2301 0.2319 5.89% Castro::construct_old_gravity() 10 0.2 0.2047 0.2139 5.43% Gravity::get_old_grav_vector() 10 0.1989 0.2037 0.2132 5.42% Castro::construct_new_gravity() 10 0.1996 0.2019 0.2034 5.17% Amr::init() 1 0.1824 0.1834 0.1838 4.67% Castro::expand_state() 10 0.1444 0.1581 0.1681 4.27% FillPatchIterator::FillFromLevel0() 41 0.1526 0.1592 0.1658 4.21% FillPatchSingleLevel 41 0.1525 0.1591 0.1657 4.21% Amr::initialInit() 1 0.1616 0.1628 0.1636 4.16% Castro::do_old_sources() 10 0.1388 0.1409 0.1427 3.63% amrex::Copy() 193 0.1117 0.1273 0.137 3.48% Castro::clean_state() 62 0.1206 0.1265 0.1329 3.38% Amr::InitializeInit() 1 0.06827 0.1001 0.131 3.33% Amr::defBaseLevel() 1 0.06826 0.1001 0.131 3.33% FabArray::ParallelCopy() 41 0.1159 0.1197 0.1307 3.32% FabArray::setVal() 143 0.1031 0.106 0.1089 2.77% Castro::initialize_advance() 10 0.1027 0.1047 0.1074 2.73% Castro::initData() 1 0.04282 0.07523 0.1063 2.70% Amr::FinalizeInit() 1 0.03217 0.06269 0.09517 2.42% Castro::estTimeStep() 21 0.02045 0.05635 0.09366 2.38% Castro::do_new_sources() 10 0.07646 0.08128 0.0851 2.16% Castro::computeTemp() 63 0.06566 0.07044 0.07234 1.84% FabArray::ParallelCopy_finish() 41 0.05043 0.05639 0.07132 1.81% FabArray::ParallelCopy_nowait() 41 0.05927 0.06317 0.06623 1.68% Castro::computeInitialDt() 2 0.002291 0.03279 0.06486 1.65% Castro::normalize_species() 62 0.04609 0.04973 0.05549 1.41% Castro::reset_internal_energy(MultiFab) 63 0.04703 0.05065 0.05202 1.32% Castro::reset_internal_energy(Fab) 1008 0.04672 0.05032 0.05167 1.31% Castro::construct_new_source() 50 0.03687 0.0411 0.04506 1.14% StateDataPhysBCFunct::() 41 0.03488 0.03932 0.04386 1.11% StateData::FillBoundary(geom) 41 0.03473 0.03917 0.04372 1.11% Castro::construct_new_gravity_source() 10 0.02948 0.03254 0.03591 0.91% Amr::writePlotFile() 2 0.03308 0.03349 0.03375 0.86% Castro::post_init() 1 0.02915 0.02939 0.02972 0.76% Gravity::interpolate_monopole_grav() 21 0.02657 0.02697 0.02741 0.70% Castro::finalize_do_advance() 10 0.01093 0.01632 0.02295 0.58% Castro::apply_source_to_state() 20 0.01791 0.01971 0.02132 0.54% FabArray::Saxpy() 20 0.01784 0.01964 0.02124 0.54% FabArray::setDomainBndry() 41 0.01612 0.0187 0.01995 0.51% Castro::post_timestep() 10 0.01559 0.01647 0.01794 0.46% Castro::Castro() 1 0.01496 0.01637 0.01776 0.45% Castro::construct_old_source() 50 0.01562 0.01675 0.01769 0.45% Castro::construct_old_gravity_source() 10 0.01553 0.01665 0.01756 0.45% VisMF::Write(FabArray) 2 0.01222 0.01349 0.01699 0.43% Castro::check_for_nan() 20 0.01269 0.01433 0.01579 0.40% MultiFab::contains_nan() 20 0.01266 0.01429 0.01575 0.40% Castro::initMFs() 1 0.008678 0.009552 0.01153 0.29% Castro::computeNewDt() 9 0.008561 0.008581 0.0086 0.22% AmrLevel::AmrLevel(dm) 1 0.007138 0.007446 0.008053 0.20% Other 260 0.0267 0.03192 0.03506 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 27 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8663 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6792 KiB 6796 KiB 6799 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4559 KiB 4562 KiB 4566 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 253 KiB 274 KiB 290 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 21 KiB 22 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2820 KiB 2822 KiB 2824 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 208 KiB 214 KiB 221 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 44 KiB 46 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 66 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized