Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:26 UTC on 2025-04-29. Successfully read inputs file ... Castro git describe: 25.04-16-gb3493c83e AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-3-g7289474a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014533983 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.359060928 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342868383 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315449363 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315067924 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365590333 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308159745 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30340267 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309600574 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301254256 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302024258 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008958144 seconds Ending run at 05:20:29 UTC on 2025-04-29. Run time = 3.401626761 Run time without initialization = 3.236764318 Average number of zones advanced per microsecond: 0.810 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.3994 ... 3.4008 ... 3.4017 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1769 2.2180 2.2542 66.27% Gravity::make_radial_gravity() 21 0.2919 0.2997 0.3109 9.14% check_for_negative_density() 10 0.08896 0.127 0.1679 4.93% FabArray::ParallelCopy_finish() 41 0.04318 0.06105 0.1023 3.01% Castro::initData() 1 0.03709 0.07116 0.1016 2.99% Castro::estTimeStep() 21 0.02921 0.06329 0.09998 2.94% amrex::Copy() 193 0.06906 0.07982 0.08512 2.50% FabArray::setVal() 143 0.05889 0.06645 0.07093 2.09% Castro::normalize_species() 62 0.04686 0.04962 0.05252 1.54% Castro::reset_internal_energy(Fab) 1008 0.04431 0.04587 0.04772 1.40% FabArray::ParallelCopy_nowait() 41 0.036 0.04161 0.04448 1.31% FillPatchIterator::Initialize 41 0.02796 0.03339 0.03656 1.07% StateData::FillBoundary(geom) 41 0.02982 0.03252 0.03486 1.02% Gravity::interpolate_monopole_grav() 21 0.02656 0.02697 0.02723 0.80% Castro::construct_new_gravity_source() 10 0.02338 0.02462 0.02587 0.76% Castro::computeTemp() 63 0.01779 0.01834 0.01905 0.56% FabArray::Saxpy() 20 0.01023 0.01402 0.01795 0.53% Castro::initialize_do_advance() 10 0.0126 0.01627 0.01753 0.52% Castro::construct_old_gravity_source() 10 0.007234 0.01034 0.01676 0.49% VisMF::Write(FabArray) 2 0.009192 0.009904 0.01373 0.40% Castro::initialize_advance() 10 0.009297 0.01131 0.01281 0.38% MultiFab::contains_nan() 20 0.01038 0.01156 0.01242 0.37% Amr::writePlotFile() 2 0.007933 0.01067 0.0114 0.34% FabArray::setDomainBndry() 41 0.007968 0.009609 0.01083 0.32% Castro::initMFs() 1 0.006425 0.006941 0.008458 0.25% Castro::construct_new_source() 50 0.005729 0.006161 0.006404 0.19% main() 1 0.003265 0.004001 0.004915 0.14% Gravity::get_new_grav_vector() 11 0.003002 0.003332 0.003773 0.11% Amr::coarseTimeStep() 10 0.001972 0.002736 0.003745 0.11% Gravity::get_old_grav_vector() 10 0.001584 0.002027 0.002319 0.07% Castro::finalize_do_advance() 10 0.0005209 0.00108 0.001221 0.04% AmrLevel::FillPatch() 41 0.0007145 0.0008696 0.001017 0.03% Amr::timeStep() 10 0.0001477 0.000189 0.0003512 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002762 0.00029 0.0003045 0.01% Castro::do_advance_ctu() 10 0.0001599 0.0001733 0.0001902 0.01% Castro::clean_state() 62 0.0001556 0.000169 0.0001797 0.01% StateDataPhysBCFunct::() 41 9.46e-05 0.0001073 0.0001298 0.00% Castro::construct_old_source() 50 4.776e-05 7.285e-05 0.0001183 0.00% Castro::do_old_sources() 10 7.711e-05 9.608e-05 0.0001159 0.00% FillPatchIterator::FillFromLevel0() 41 9.903e-05 0.0001063 0.0001142 0.00% FabArray::ParallelCopy() 41 8.209e-05 8.927e-05 0.0001111 0.00% Castro::Castro() 1 4.296e-05 6.782e-05 8.789e-05 0.00% FillPatchSingleLevel 41 6.163e-05 6.79e-05 8.759e-05 0.00% Castro::apply_source_to_state() 20 4.152e-05 5.928e-05 8.332e-05 0.00% Amr::FinalizeInit() 1 3.483e-06 1.218e-05 6.735e-05 0.00% Castro::do_new_sources() 10 5.322e-05 6.011e-05 6.567e-05 0.00% Castro::advance() 10 4.436e-05 5.132e-05 6.101e-05 0.00% Amr::defBaseLevel() 1 3.387e-05 4.408e-05 5.546e-05 0.00% Castro::subcycle_advance_ctu() 10 4.356e-05 4.94e-05 5.528e-05 0.00% Castro::construct_old_gravity() 10 3.669e-05 4.147e-05 4.419e-05 0.00% Castro::construct_new_gravity() 10 2.674e-05 3.524e-05 4.086e-05 0.00% Castro::check_for_nan() 20 2.378e-05 2.802e-05 3.205e-05 0.00% Castro::expand_state() 10 2.163e-05 2.442e-05 2.961e-05 0.00% Castro::post_init() 1 1.285e-05 1.618e-05 2.786e-05 0.00% Castro::post_timestep() 10 1.401e-05 1.807e-05 2.358e-05 0.00% Castro::computeNewDt() 9 1.002e-05 1.043e-05 1.141e-05 0.00% Amr::InitializeInit() 1 2.226e-06 3.17e-06 5.524e-06 0.00% Castro::computeInitialDt() 2 3.463e-06 4.114e-06 4.947e-06 0.00% Amr::init() 1 1.552e-06 1.904e-06 2.378e-06 0.00% Amr::initialInit() 1 1.275e-06 1.749e-06 2.179e-06 0.00% Other 261 0.01477 0.01877 0.02081 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.399 3.401 3.402 100.00% Amr::coarseTimeStep() 10 3.223 3.223 3.223 94.75% Amr::timeStep() 10 3.209 3.21 3.211 94.40% Castro::advance() 10 3.193 3.194 3.194 93.90% Castro::subcycle_advance_ctu() 10 3.116 3.12 3.132 92.06% Castro::do_advance_ctu() 10 3.115 3.12 3.132 92.06% Castro::construct_ctu_hydro_source() 10 2.364 2.367 2.369 69.63% Gravity::make_radial_gravity() 21 0.3099 0.3156 0.3244 9.54% AmrLevel::FillPatch() 41 0.2012 0.2112 0.2355 6.92% Gravity::get_new_grav_vector() 11 0.2065 0.2074 0.2078 6.11% FillPatchIterator::Initialize 41 0.167 0.1786 0.2057 6.05% Castro::construct_old_gravity() 10 0.1866 0.1907 0.1977 5.81% Gravity::get_old_grav_vector() 10 0.186 0.19 0.1971 5.79% Castro::construct_new_gravity() 10 0.1845 0.185 0.1858 5.46% FillPatchIterator::FillFromLevel0() 41 0.12 0.1356 0.1695 4.98% FillPatchSingleLevel 41 0.1199 0.1355 0.1694 4.98% check_for_negative_density() 10 0.08896 0.127 0.1679 4.93% Castro::initialize_do_advance() 10 0.1572 0.1631 0.1674 4.92% Amr::init() 1 0.1635 0.1646 0.1649 4.85% Amr::initialInit() 1 0.1489 0.1503 0.1507 4.43% FabArray::ParallelCopy() 41 0.08485 0.1028 0.1385 4.07% Amr::InitializeInit() 1 0.05818 0.09253 0.1233 3.62% Amr::defBaseLevel() 1 0.05817 0.09253 0.1233 3.62% Castro::clean_state() 62 0.1141 0.1194 0.123 3.62% Castro::do_old_sources() 10 0.1072 0.112 0.1195 3.51% Castro::expand_state() 10 0.1033 0.1096 0.119 3.50% Castro::initData() 1 0.04078 0.07496 0.1051 3.09% FabArray::ParallelCopy_finish() 41 0.04318 0.06105 0.1023 3.01% Castro::estTimeStep() 21 0.02921 0.06329 0.09998 2.94% Amr::FinalizeInit() 1 0.02635 0.05775 0.09246 2.72% amrex::Copy() 193 0.06906 0.07982 0.08512 2.50% Castro::initialize_advance() 10 0.05803 0.07013 0.07489 2.20% FabArray::setVal() 143 0.05889 0.06645 0.07093 2.09% Castro::computeInitialDt() 2 0.002127 0.03361 0.06825 2.01% Castro::do_new_sources() 10 0.06254 0.06444 0.06708 1.97% Castro::computeTemp() 63 0.06239 0.0645 0.06695 1.97% Castro::normalize_species() 62 0.04686 0.04962 0.05252 1.54% Castro::reset_internal_energy(MultiFab) 63 0.0446 0.04616 0.04801 1.41% Castro::reset_internal_energy(Fab) 1008 0.04431 0.04587 0.04772 1.40% FabArray::ParallelCopy_nowait() 41 0.0361 0.04171 0.04457 1.31% StateDataPhysBCFunct::() 41 0.02993 0.03263 0.03497 1.03% StateData::FillBoundary(geom) 41 0.02982 0.03252 0.03486 1.02% Castro::construct_new_source() 50 0.02925 0.03078 0.03222 0.95% Gravity::interpolate_monopole_grav() 21 0.02656 0.02697 0.02723 0.80% Castro::construct_new_gravity_source() 10 0.02338 0.02462 0.02587 0.76% Castro::finalize_do_advance() 10 0.01953 0.02198 0.02464 0.72% Amr::writePlotFile() 2 0.02323 0.02334 0.02374 0.70% Castro::post_init() 1 0.02315 0.02357 0.02371 0.70% Castro::apply_source_to_state() 20 0.01027 0.01408 0.01804 0.53% FabArray::Saxpy() 20 0.01023 0.01402 0.01795 0.53% Castro::post_timestep() 10 0.0156 0.01636 0.01697 0.50% Castro::construct_old_source() 50 0.007282 0.01042 0.01687 0.50% Castro::construct_old_gravity_source() 10 0.007234 0.01034 0.01676 0.49% VisMF::Write(FabArray) 2 0.009192 0.009904 0.01373 0.40% Castro::check_for_nan() 20 0.0104 0.01158 0.01245 0.37% MultiFab::contains_nan() 20 0.01038 0.01156 0.01242 0.37% Castro::Castro() 1 0.01043 0.01087 0.01167 0.34% FabArray::setDomainBndry() 41 0.007968 0.009609 0.01083 0.32% Castro::computeNewDt() 9 0.008785 0.008794 0.0088 0.26% Castro::initMFs() 1 0.006425 0.006941 0.008458 0.25% Other 261 0.02494 0.03046 0.03379 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6788 KiB 6789 KiB 6791 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7139 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4575 KiB 4582 KiB 4597 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 221 KiB 230 KiB 257 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 236 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized