Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:28 UTC on 2025-04-30. Successfully read inputs file ... Castro git describe: 25.04-16-gb3493c83e AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-3-g7289474a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014843787 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349463183 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329165574 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313671103 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315497436 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362196766 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311602115 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296843853 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297367169 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297592906 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298454134 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00748807 seconds Ending run at 05:19:31 UTC on 2025-04-30. Run time = 3.349938593 Run time without initialization = 3.184342253 Average number of zones advanced per microsecond: 0.823 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3486 ... 3.3493 ... 3.3500 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1606 2.2194 2.3065 68.85% Gravity::make_radial_gravity() 21 0.2906 0.3 0.3135 9.36% check_for_negative_density() 10 0.02185 0.1036 0.1686 5.03% Castro::initData() 1 0.03736 0.0714 0.1018 3.04% Castro::estTimeStep() 21 0.02025 0.05857 0.09636 2.88% amrex::Copy() 193 0.06325 0.076 0.08729 2.61% FabArray::ParallelCopy_finish() 41 0.03672 0.05109 0.07974 2.38% FabArray::setVal() 143 0.05306 0.06673 0.07385 2.20% Castro::normalize_species() 62 0.04516 0.04693 0.05103 1.52% Castro::reset_internal_energy(Fab) 1008 0.0394 0.04498 0.0483 1.44% FabArray::ParallelCopy_nowait() 41 0.03522 0.04044 0.04166 1.24% StateData::FillBoundary(geom) 41 0.02911 0.03222 0.03649 1.09% FillPatchIterator::Initialize 41 0.02785 0.03187 0.03473 1.04% Castro::construct_new_gravity_source() 10 0.0229 0.02447 0.02743 0.82% Gravity::interpolate_monopole_grav() 21 0.02644 0.02684 0.0274 0.82% Castro::computeTemp() 63 0.01613 0.01807 0.02002 0.60% Castro::initialize_do_advance() 10 0.01154 0.0154 0.01729 0.52% Castro::initialize_advance() 10 0.005275 0.01075 0.01401 0.42% FabArray::Saxpy() 20 0.01096 0.01229 0.01375 0.41% VisMF::Write(FabArray) 2 0.009285 0.009904 0.01327 0.40% MultiFab::contains_nan() 20 0.01039 0.01154 0.0132 0.39% FabArray::setDomainBndry() 41 0.007354 0.00945 0.01106 0.33% Castro::construct_old_gravity_source() 10 0.00728 0.009501 0.01044 0.31% Amr::writePlotFile() 2 0.0075 0.009694 0.01028 0.31% Castro::initMFs() 1 0.006757 0.007195 0.008465 0.25% Castro::construct_new_source() 50 0.005579 0.005951 0.006402 0.19% main() 1 0.003905 0.004183 0.00436 0.13% Amr::coarseTimeStep() 10 0.001414 0.002474 0.003964 0.12% Gravity::get_new_grav_vector() 11 0.002884 0.003216 0.003755 0.11% Gravity::get_old_grav_vector() 10 0.001503 0.002048 0.002503 0.07% Castro::finalize_do_advance() 10 0.000469 0.001163 0.001281 0.04% AmrLevel::FillPatch() 41 0.0008805 0.001047 0.0012 0.04% Amr::timeStep() 10 0.0001428 0.0001889 0.0003645 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002759 0.0002957 0.0003231 0.01% Castro::do_advance_ctu() 10 0.0001595 0.0001738 0.000197 0.01% Castro::clean_state() 62 0.0001446 0.0001619 0.0001857 0.01% StateDataPhysBCFunct::() 41 9.611e-05 0.0001102 0.0001466 0.00% FillPatchIterator::FillFromLevel0() 41 9.675e-05 0.0001054 0.0001152 0.00% Castro::Castro() 1 4.788e-05 8.318e-05 0.0001111 0.00% Castro::do_old_sources() 10 7.839e-05 9.291e-05 0.000104 0.00% FabArray::ParallelCopy() 41 8.26e-05 9.368e-05 0.0001014 0.00% Amr::FinalizeInit() 1 3.718e-06 1.447e-05 8.259e-05 0.00% Castro::construct_old_source() 50 5.393e-05 6.722e-05 7.475e-05 0.00% FillPatchSingleLevel 41 6.217e-05 6.584e-05 7.173e-05 0.00% Castro::do_new_sources() 10 5.441e-05 6.077e-05 6.522e-05 0.00% Castro::subcycle_advance_ctu() 10 4.27e-05 5.006e-05 6.498e-05 0.00% Castro::advance() 10 4.568e-05 5.034e-05 5.926e-05 0.00% Amr::defBaseLevel() 1 4.137e-05 4.88e-05 5.921e-05 0.00% Castro::apply_source_to_state() 20 4.162e-05 4.698e-05 5.413e-05 0.00% Castro::construct_old_gravity() 10 3.59e-05 4.281e-05 4.834e-05 0.00% Castro::construct_new_gravity() 10 2.904e-05 3.82e-05 4.685e-05 0.00% Castro::check_for_nan() 20 2.433e-05 2.735e-05 3.007e-05 0.00% Castro::expand_state() 10 2.199e-05 2.469e-05 2.692e-05 0.00% Castro::post_init() 1 1.47e-05 1.732e-05 2.29e-05 0.00% Castro::post_timestep() 10 1.515e-05 1.719e-05 1.948e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.344e-06 1.148e-05 1.419e-05 0.00% Castro::computeNewDt() 9 9.198e-06 1.029e-05 1.177e-05 0.00% Amr::InitializeInit() 1 2.685e-06 3.601e-06 7.259e-06 0.00% Amr::init() 1 1.634e-06 2.441e-06 5.43e-06 0.00% Castro::computeInitialDt() 2 3.34e-06 3.906e-06 5.4e-06 0.00% Amr::initialInit() 1 1.451e-06 1.835e-06 2.676e-06 0.00% Other 260 0.0153 0.01905 0.02169 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.349 3.349 3.35 100.00% Amr::coarseTimeStep() 10 3.173 3.173 3.173 94.70% Amr::timeStep() 10 3.159 3.161 3.162 94.38% Castro::advance() 10 3.144 3.145 3.145 93.88% Castro::subcycle_advance_ctu() 10 3.068 3.073 3.087 92.16% Castro::do_advance_ctu() 10 3.068 3.073 3.087 92.15% Castro::construct_ctu_hydro_source() 10 2.327 2.344 2.352 70.22% Gravity::make_radial_gravity() 21 0.3053 0.3154 0.327 9.76% Gravity::get_new_grav_vector() 11 0.2035 0.2059 0.2082 6.21% AmrLevel::FillPatch() 41 0.1756 0.1966 0.2075 6.19% Castro::construct_old_gravity() 10 0.1834 0.1899 0.2 5.97% Gravity::get_old_grav_vector() 10 0.1827 0.1892 0.1994 5.95% Castro::construct_new_gravity() 10 0.1816 0.1833 0.185 5.52% FillPatchIterator::Initialize 41 0.1455 0.1655 0.1798 5.37% check_for_negative_density() 10 0.02185 0.1036 0.1686 5.03% Amr::init() 1 0.164 0.1647 0.1654 4.94% Castro::initialize_do_advance() 10 0.1541 0.1601 0.1642 4.90% Amr::initialInit() 1 0.149 0.1501 0.1509 4.50% FillPatchIterator::FillFromLevel0() 41 0.1088 0.1242 0.1446 4.32% FillPatchSingleLevel 41 0.1087 0.1241 0.1444 4.31% Amr::InitializeInit() 1 0.05916 0.09352 0.124 3.70% Amr::defBaseLevel() 1 0.05916 0.09351 0.124 3.70% Castro::clean_state() 62 0.1071 0.1155 0.1206 3.60% Castro::expand_state() 10 0.09971 0.108 0.1168 3.49% FabArray::ParallelCopy() 41 0.07774 0.09172 0.1152 3.44% Castro::do_old_sources() 10 0.08906 0.09697 0.1098 3.28% Castro::initData() 1 0.04112 0.07522 0.1054 3.15% Castro::estTimeStep() 21 0.02025 0.05857 0.09636 2.88% Amr::FinalizeInit() 1 0.02641 0.05658 0.09112 2.72% amrex::Copy() 193 0.06325 0.076 0.08729 2.61% FabArray::ParallelCopy_finish() 41 0.03672 0.05109 0.07974 2.38% FabArray::setVal() 143 0.05306 0.06673 0.07385 2.20% Castro::initialize_advance() 10 0.05333 0.06863 0.07376 2.20% Castro::do_new_sources() 10 0.05938 0.0636 0.07167 2.14% Castro::computeTemp() 63 0.05597 0.06334 0.06802 2.03% Castro::computeInitialDt() 2 0.002093 0.03227 0.06673 1.99% Castro::normalize_species() 62 0.04516 0.04693 0.05103 1.52% Castro::reset_internal_energy(MultiFab) 63 0.03968 0.04527 0.04861 1.45% Castro::reset_internal_energy(Fab) 1008 0.0394 0.04498 0.0483 1.44% FabArray::ParallelCopy_nowait() 41 0.03534 0.04054 0.04174 1.25% StateDataPhysBCFunct::() 41 0.02921 0.03233 0.03664 1.09% StateData::FillBoundary(geom) 41 0.02911 0.03222 0.03649 1.09% Castro::construct_new_source() 50 0.02848 0.03043 0.03383 1.01% Castro::construct_new_gravity_source() 10 0.0229 0.02447 0.02743 0.82% Gravity::interpolate_monopole_grav() 21 0.02644 0.02684 0.0274 0.82% Castro::post_init() 1 0.02335 0.02381 0.02392 0.71% Castro::finalize_do_advance() 10 0.01098 0.01903 0.02331 0.70% Amr::writePlotFile() 2 0.02204 0.02215 0.02258 0.67% Castro::post_timestep() 10 0.01432 0.01576 0.01711 0.51% Castro::apply_source_to_state() 20 0.011 0.01234 0.0138 0.41% FabArray::Saxpy() 20 0.01096 0.01229 0.01375 0.41% VisMF::Write(FabArray) 2 0.009285 0.009904 0.01327 0.40% Castro::check_for_nan() 20 0.01042 0.01156 0.01323 0.39% MultiFab::contains_nan() 20 0.01039 0.01154 0.0132 0.39% Castro::Castro() 1 0.01088 0.01144 0.01214 0.36% FabArray::setDomainBndry() 41 0.007354 0.00945 0.01106 0.33% Castro::construct_old_source() 50 0.007334 0.009569 0.01052 0.31% Castro::construct_old_gravity_source() 10 0.00728 0.009501 0.01044 0.31% Castro::computeNewDt() 9 0.008437 0.008458 0.008474 0.25% Castro::initMFs() 1 0.006757 0.007195 0.008465 0.25% AmrLevel::AmrLevel(dm) 1 0.005517 0.00607 0.00674 0.20% Other 260 0.02005 0.02466 0.02837 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6782 KiB 6785 KiB 6787 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4576 KiB 4583 KiB 4601 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 197 KiB 220 KiB 232 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 240 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized