Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:25:06 UTC on 2025-05-01. Successfully read inputs file ... Castro git describe: 25.04-18-g423a855dd AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.04-3-g7289474a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014519472 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347954861 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.330208993 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.331342651 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31373265 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.367082074 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302399759 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.302083426 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.303419971 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.320001713 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302735076 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008225966 seconds Ending run at 05:25:09 UTC on 2025-05-01. Run time = 3.404110458 Run time without initialization = 3.235246253 Average number of zones advanced per microsecond: 0.810 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4013 ... 3.4026 ... 3.4044 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1780 2.2267 2.2793 66.95% Gravity::make_radial_gravity() 21 0.3003 0.3072 0.3218 9.45% check_for_negative_density() 10 0.05447 0.1077 0.1567 4.60% FabArray::ParallelCopy_finish() 41 0.04154 0.05857 0.1169 3.43% Castro::estTimeStep() 21 0.03063 0.06498 0.1036 3.04% Castro::initData() 1 0.03866 0.07288 0.1035 3.04% amrex::Copy() 193 0.05999 0.08235 0.09193 2.70% FabArray::setVal() 143 0.04846 0.06777 0.0725 2.13% Castro::reset_internal_energy(Fab) 1008 0.04408 0.04725 0.04934 1.45% Castro::normalize_species() 62 0.04564 0.04641 0.04922 1.45% FabArray::ParallelCopy_nowait() 41 0.03505 0.04176 0.04396 1.29% FillPatchIterator::Initialize 41 0.02567 0.03216 0.03584 1.05% StateData::FillBoundary(geom) 41 0.03021 0.03233 0.03515 1.03% Castro::construct_new_gravity_source() 10 0.02323 0.02584 0.03224 0.95% Gravity::interpolate_monopole_grav() 21 0.02671 0.02755 0.02928 0.86% Castro::computeTemp() 63 0.01779 0.01857 0.01922 0.56% Castro::initialize_do_advance() 10 0.01005 0.01589 0.0178 0.52% FabArray::Saxpy() 20 0.01124 0.01394 0.01509 0.44% MultiFab::contains_nan() 20 0.01063 0.01169 0.01329 0.39% Castro::initialize_advance() 10 0.004299 0.01173 0.01302 0.38% Amr::writePlotFile() 2 0.007909 0.01071 0.01297 0.38% VisMF::Write(FabArray) 2 0.008793 0.00965 0.01205 0.35% Castro::construct_old_gravity_source() 10 0.005496 0.01027 0.01165 0.34% FabArray::setDomainBndry() 41 0.007091 0.009524 0.01128 0.33% Castro::initMFs() 1 0.006481 0.007324 0.007697 0.23% Castro::construct_new_source() 50 0.005365 0.0065 0.006963 0.20% Castro::enforce_min_density() 62 0.005552 0.006013 0.006423 0.19% main() 1 0.003882 0.004923 0.005665 0.17% Gravity::get_new_grav_vector() 11 0.002742 0.00346 0.003793 0.11% Amr::coarseTimeStep() 10 0.001164 0.002097 0.003042 0.09% Gravity::get_old_grav_vector() 10 0.001583 0.002049 0.002533 0.07% Castro::finalize_do_advance() 10 0.0005554 0.001106 0.00122 0.04% AmrLevel::FillPatch() 41 0.0008118 0.0009643 0.001089 0.03% Amr::timeStep() 10 0.0001337 0.0001965 0.0004135 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002771 0.0002966 0.0003236 0.01% Castro::do_advance_ctu() 10 0.0001421 0.000172 0.0002072 0.01% Castro::clean_state() 62 0.0001466 0.000163 0.0001734 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001026 0.000112 0.0001327 0.00% Castro::do_old_sources() 10 7.775e-05 9.835e-05 0.0001162 0.00% StateDataPhysBCFunct::() 41 9.576e-05 0.0001054 0.0001143 0.00% FabArray::ParallelCopy() 41 8.23e-05 9.111e-05 0.0001009 0.00% Castro::construct_old_source() 50 5.04e-05 7.434e-05 9.496e-05 0.00% Castro::Castro() 1 4.095e-05 6.917e-05 8.929e-05 0.00% Amr::FinalizeInit() 1 3.945e-06 1.282e-05 7.266e-05 0.00% FillPatchSingleLevel 41 6.05e-05 6.611e-05 7.204e-05 0.00% Castro::do_new_sources() 10 5.058e-05 6.503e-05 7.17e-05 0.00% Castro::advance() 10 4.768e-05 5.405e-05 6.569e-05 0.00% Castro::subcycle_advance_ctu() 10 4.489e-05 5.113e-05 6.375e-05 0.00% Castro::construct_old_gravity() 10 3.536e-05 4.297e-05 6.331e-05 0.00% Amr::defBaseLevel() 1 4.096e-05 4.757e-05 5.732e-05 0.00% Castro::apply_source_to_state() 20 4.154e-05 4.942e-05 5.699e-05 0.00% Castro::construct_new_gravity() 10 2.729e-05 3.267e-05 4.022e-05 0.00% Castro::expand_state() 10 2.121e-05 2.601e-05 3.608e-05 0.00% Castro::check_for_nan() 20 2.432e-05 2.684e-05 3.145e-05 0.00% Castro::post_init() 1 1.432e-05 1.676e-05 2.055e-05 0.00% Castro::post_timestep() 10 1.318e-05 1.588e-05 1.77e-05 0.00% Castro::computeNewDt() 9 9.127e-06 1.01e-05 1.09e-05 0.00% Amr::initialInit() 1 1.547e-06 2.896e-06 8.564e-06 0.00% Amr::InitializeInit() 1 2.694e-06 3.365e-06 6.12e-06 0.00% Castro::computeInitialDt() 2 2.914e-06 3.868e-06 4.59e-06 0.00% Amr::init() 1 1.639e-06 2.091e-06 2.822e-06 0.00% Other 199 0.01024 0.01286 0.01507 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.401 3.403 3.404 100.00% Amr::coarseTimeStep() 10 3.221 3.221 3.221 94.63% Amr::timeStep() 10 3.207 3.208 3.209 94.27% Castro::advance() 10 3.191 3.192 3.192 93.78% Castro::subcycle_advance_ctu() 10 3.112 3.118 3.14 92.23% Castro::do_advance_ctu() 10 3.112 3.118 3.14 92.23% Castro::construct_ctu_hydro_source() 10 2.353 2.356 2.362 69.37% Gravity::make_radial_gravity() 21 0.3171 0.3243 0.3349 9.84% AmrLevel::FillPatch() 41 0.1876 0.2076 0.2416 7.10% FillPatchIterator::Initialize 41 0.1559 0.1748 0.2172 6.38% Gravity::get_new_grav_vector() 11 0.2098 0.2111 0.2126 6.25% Castro::construct_old_gravity() 10 0.195 0.1994 0.2084 6.12% Gravity::get_old_grav_vector() 10 0.1943 0.1988 0.2077 6.10% Castro::construct_new_gravity() 10 0.1877 0.1884 0.1893 5.56% FillPatchIterator::FillFromLevel0() 41 0.1188 0.1331 0.1844 5.42% FillPatchSingleLevel 41 0.1187 0.133 0.1843 5.41% Castro::initialize_do_advance() 10 0.1555 0.1628 0.1757 5.16% Amr::init() 1 0.1672 0.1677 0.1688 4.96% check_for_negative_density() 10 0.05447 0.1077 0.1567 4.60% Amr::initialInit() 1 0.1522 0.1529 0.154 4.52% FabArray::ParallelCopy() 41 0.08495 0.1005 0.1521 4.47% Castro::expand_state() 10 0.1017 0.1096 0.1298 3.81% Amr::InitializeInit() 1 0.05855 0.09453 0.1259 3.70% Amr::defBaseLevel() 1 0.05854 0.09453 0.1259 3.70% Castro::clean_state() 62 0.1135 0.1179 0.1237 3.63% FabArray::ParallelCopy_finish() 41 0.04154 0.05857 0.1169 3.43% Castro::do_old_sources() 10 0.09788 0.1052 0.108 3.17% Castro::initData() 1 0.04218 0.0766 0.1075 3.16% Castro::estTimeStep() 21 0.03063 0.06498 0.1036 3.04% Amr::FinalizeInit() 1 0.02691 0.05838 0.09535 2.80% amrex::Copy() 193 0.05999 0.08235 0.09193 2.70% Castro::initialize_advance() 10 0.04816 0.07081 0.07628 2.24% Castro::do_new_sources() 10 0.05839 0.06545 0.07408 2.18% FabArray::setVal() 143 0.04846 0.06777 0.0725 2.13% Castro::computeInitialDt() 2 0.002302 0.03388 0.07071 2.08% Castro::computeTemp() 63 0.06216 0.06612 0.06885 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04437 0.04755 0.04964 1.46% Castro::reset_internal_energy(Fab) 1008 0.04408 0.04725 0.04934 1.45% Castro::normalize_species() 62 0.04564 0.04641 0.04922 1.45% FabArray::ParallelCopy_nowait() 41 0.03516 0.04186 0.04405 1.29% Castro::construct_new_source() 50 0.02859 0.03234 0.03881 1.14% StateDataPhysBCFunct::() 41 0.03031 0.03244 0.03526 1.04% StateData::FillBoundary(geom) 41 0.03021 0.03233 0.03515 1.03% Castro::construct_new_gravity_source() 10 0.02323 0.02584 0.03224 0.95% Gravity::interpolate_monopole_grav() 21 0.02671 0.02755 0.02928 0.86% Castro::finalize_do_advance() 10 0.01266 0.02232 0.02924 0.86% Castro::post_init() 1 0.02382 0.024 0.02412 0.71% Amr::writePlotFile() 2 0.02296 0.0231 0.02353 0.69% Castro::post_timestep() 10 0.01565 0.01614 0.01664 0.49% Castro::apply_source_to_state() 20 0.01128 0.01399 0.01515 0.44% FabArray::Saxpy() 20 0.01124 0.01394 0.01509 0.44% Castro::check_for_nan() 20 0.01066 0.01171 0.01331 0.39% MultiFab::contains_nan() 20 0.01063 0.01169 0.01329 0.39% Castro::Castro() 1 0.009444 0.01129 0.01208 0.35% VisMF::Write(FabArray) 2 0.008793 0.00965 0.01205 0.35% Castro::construct_old_source() 50 0.005546 0.01034 0.01174 0.34% Castro::construct_old_gravity_source() 10 0.005496 0.01027 0.01165 0.34% FabArray::setDomainBndry() 41 0.007091 0.009524 0.01128 0.33% Castro::computeNewDt() 9 0.009878 0.009899 0.009922 0.29% Castro::initMFs() 1 0.006481 0.007324 0.007697 0.23% Castro::enforce_min_density() 62 0.005552 0.006013 0.006423 0.19% Other 199 0.02011 0.02438 0.02836 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8666 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6774 KiB 6782 KiB 6786 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4567 KiB 4577 KiB 4611 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 225 KiB 266 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 243 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 43 KiB 67 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 73 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized