Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:59 UTC on 2025-05-02. Successfully read inputs file ... Castro git describe: 25.05 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014905541 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340855818 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343000463 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312356946 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311666932 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.348716167 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300911081 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293941592 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295984486 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298439043 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296765417 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007691126 seconds Ending run at 05:19:03 UTC on 2025-05-02. Run time = 3.326371981 Run time without initialization = 3.155276149 Average number of zones advanced per microsecond: 0.831 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3222 ... 3.3255 ... 3.3266 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1660 2.2200 2.2703 68.25% Gravity::make_radial_gravity() 21 0.2847 0.2923 0.3096 9.31% check_for_negative_density() 10 0.02209 0.07694 0.1354 4.07% Castro::initData() 1 0.03986 0.07332 0.1054 3.17% Castro::estTimeStep() 21 0.0224 0.061 0.09602 2.89% amrex::Copy() 193 0.06267 0.07912 0.08738 2.63% FabArray::ParallelCopy_finish() 41 0.03723 0.04783 0.08622 2.59% FabArray::setVal() 143 0.05145 0.06559 0.07103 2.14% Castro::normalize_species() 62 0.04459 0.04699 0.04995 1.50% Castro::reset_internal_energy(Fab) 1008 0.04494 0.04694 0.04876 1.47% FabArray::ParallelCopy_nowait() 41 0.03571 0.04111 0.04319 1.30% StateData::FillBoundary(geom) 41 0.02897 0.03187 0.03558 1.07% FillPatchIterator::Initialize 41 0.02781 0.03218 0.03454 1.04% Castro::construct_new_gravity_source() 10 0.0225 0.02428 0.02743 0.82% Gravity::interpolate_monopole_grav() 21 0.02646 0.02683 0.02728 0.82% Castro::computeTemp() 63 0.01809 0.01855 0.01921 0.58% Castro::initialize_do_advance() 10 0.01161 0.01668 0.01803 0.54% FabArray::Saxpy() 20 0.01072 0.01258 0.01377 0.41% Castro::initialize_advance() 10 0.005282 0.01065 0.0132 0.40% VisMF::Write(FabArray) 2 0.008991 0.009584 0.01278 0.38% MultiFab::contains_nan() 20 0.01024 0.01119 0.01232 0.37% FabArray::setDomainBndry() 41 0.008376 0.0102 0.01109 0.33% Amr::writePlotFile() 2 0.008142 0.01006 0.01082 0.33% Castro::construct_old_gravity_source() 10 0.006934 0.009701 0.01052 0.32% Castro::initMFs() 1 0.006436 0.007159 0.008439 0.25% StateData::define() 4 0.005231 0.005787 0.006667 0.20% Castro::construct_new_source() 50 0.005463 0.006086 0.00644 0.19% main() 1 0.003492 0.003872 0.004371 0.13% Gravity::get_new_grav_vector() 11 0.00297 0.003505 0.004011 0.12% Amr::coarseTimeStep() 10 0.001518 0.002215 0.003296 0.10% Gravity::get_old_grav_vector() 10 0.001523 0.002151 0.002721 0.08% Castro::finalize_do_advance() 10 0.0005364 0.001106 0.001219 0.04% AmrLevel::FillPatch() 41 0.0007544 0.0008604 0.0009336 0.03% Amr::timeStep() 10 0.0001305 0.0001858 0.0003612 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002726 0.0002915 0.000326 0.01% Castro::do_advance_ctu() 10 0.0001446 0.0001644 0.0001948 0.01% Castro::clean_state() 62 0.0001414 0.0001556 0.0001816 0.01% StateDataPhysBCFunct::() 41 8.934e-05 0.0001038 0.0001198 0.00% FillPatchIterator::FillFromLevel0() 41 9.026e-05 0.000104 0.0001121 0.00% Castro::do_old_sources() 10 7.231e-05 9.453e-05 0.0001062 0.00% Amr::FinalizeInit() 1 3.508e-06 1.646e-05 9.695e-05 0.00% FabArray::ParallelCopy() 41 8.24e-05 8.9e-05 9.223e-05 0.00% Castro::construct_old_source() 50 4.56e-05 6.859e-05 7.871e-05 0.00% FillPatchSingleLevel 41 6.009e-05 6.416e-05 7.139e-05 0.00% Castro::apply_source_to_state() 20 4.083e-05 5.136e-05 7.095e-05 0.00% Castro::advance() 10 3.723e-05 5.431e-05 6.946e-05 0.00% Castro::Castro() 1 4.833e-05 5.678e-05 6.915e-05 0.00% Castro::do_new_sources() 10 5.615e-05 6.039e-05 6.658e-05 0.00% Amr::defBaseLevel() 1 4.251e-05 5.297e-05 6.359e-05 0.00% Castro::subcycle_advance_ctu() 10 3.994e-05 4.945e-05 5.731e-05 0.00% Castro::construct_old_gravity() 10 3.375e-05 4.087e-05 5.009e-05 0.00% Castro::construct_new_gravity() 10 2.911e-05 3.444e-05 4.413e-05 0.00% Castro::check_for_nan() 20 2.374e-05 2.786e-05 3.378e-05 0.00% Castro::post_init() 1 1.442e-05 1.888e-05 2.962e-05 0.00% Castro::expand_state() 10 2.123e-05 2.505e-05 2.88e-05 0.00% Castro::post_timestep() 10 1.326e-05 1.67e-05 2.182e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.43e-06 1.052e-05 1.597e-05 0.00% Castro::computeNewDt() 9 8.181e-06 9.732e-06 1.067e-05 0.00% Amr::InitializeInit() 1 2.585e-06 3.712e-06 6.126e-06 0.00% Castro::computeInitialDt() 2 3.184e-06 3.768e-06 4.775e-06 0.00% Amr::initialInit() 1 1.467e-06 2.047e-06 2.679e-06 0.00% Amr::init() 1 1.488e-06 1.874e-06 2.356e-06 0.00% Other 256 0.009229 0.01538 0.01815 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.322 3.326 3.327 100.00% Amr::coarseTimeStep() 10 3.143 3.143 3.143 94.49% Amr::timeStep() 10 3.13 3.131 3.132 94.15% Castro::advance() 10 3.114 3.115 3.115 93.65% Castro::subcycle_advance_ctu() 10 3.039 3.042 3.06 91.99% Castro::do_advance_ctu() 10 3.038 3.042 3.06 91.99% Castro::construct_ctu_hydro_source() 10 2.314 2.319 2.323 69.83% Gravity::make_radial_gravity() 21 0.3009 0.3088 0.3229 9.71% AmrLevel::FillPatch() 41 0.1811 0.1958 0.2127 6.39% Gravity::get_new_grav_vector() 11 0.2042 0.2055 0.2075 6.24% Castro::construct_old_gravity() 10 0.1793 0.1844 0.1959 5.89% Gravity::get_old_grav_vector() 10 0.1784 0.1837 0.1953 5.87% FillPatchIterator::Initialize 41 0.1513 0.1636 0.1887 5.67% Castro::construct_new_gravity() 10 0.1819 0.1831 0.1842 5.54% Amr::init() 1 0.1672 0.1703 0.1714 5.15% Castro::initialize_do_advance() 10 0.1567 0.1631 0.169 5.08% Amr::initialInit() 1 0.153 0.1558 0.1572 4.72% FillPatchIterator::FillFromLevel0() 41 0.1133 0.1213 0.1513 4.55% FillPatchSingleLevel 41 0.1132 0.1212 0.1512 4.55% check_for_negative_density() 10 0.02209 0.07694 0.1354 4.07% Amr::InitializeInit() 1 0.06187 0.09683 0.1296 3.89% Amr::defBaseLevel() 1 0.06187 0.09683 0.1296 3.89% Castro::clean_state() 62 0.1137 0.118 0.1226 3.69% FabArray::ParallelCopy() 41 0.0802 0.08912 0.1221 3.67% Castro::expand_state() 10 0.1001 0.1097 0.1217 3.66% Castro::initData() 1 0.04321 0.07717 0.1088 3.27% Castro::do_old_sources() 10 0.09114 0.09487 0.09918 2.98% Castro::estTimeStep() 21 0.0224 0.061 0.09602 2.89% Amr::FinalizeInit() 1 0.02673 0.05894 0.0911 2.74% amrex::Copy() 193 0.06267 0.07912 0.08738 2.63% FabArray::ParallelCopy_finish() 41 0.03723 0.04783 0.08622 2.59% Castro::initialize_advance() 10 0.05076 0.06905 0.07312 2.20% FabArray::setVal() 143 0.05145 0.06559 0.07103 2.14% Castro::do_new_sources() 10 0.05893 0.06391 0.07002 2.10% Castro::computeTemp() 63 0.06331 0.06577 0.06749 2.03% Castro::computeInitialDt() 2 0.002126 0.03474 0.06664 2.00% Castro::normalize_species() 62 0.04459 0.04699 0.04995 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04522 0.04723 0.04904 1.47% Castro::reset_internal_energy(Fab) 1008 0.04494 0.04694 0.04876 1.47% FabArray::ParallelCopy_nowait() 41 0.03581 0.0412 0.04328 1.30% StateDataPhysBCFunct::() 41 0.02906 0.03198 0.0357 1.07% StateData::FillBoundary(geom) 41 0.02897 0.03187 0.03558 1.07% Castro::construct_new_source() 50 0.02826 0.03036 0.03368 1.01% Castro::construct_new_gravity_source() 10 0.0225 0.02428 0.02743 0.82% Gravity::interpolate_monopole_grav() 21 0.02646 0.02683 0.02728 0.82% Castro::post_init() 1 0.02298 0.02358 0.02423 0.73% Castro::finalize_do_advance() 10 0.01279 0.01867 0.02372 0.71% Amr::writePlotFile() 2 0.02186 0.02233 0.02287 0.69% Castro::post_timestep() 10 0.01535 0.01618 0.01705 0.51% Castro::apply_source_to_state() 20 0.01076 0.01263 0.01384 0.42% FabArray::Saxpy() 20 0.01072 0.01258 0.01377 0.41% VisMF::Write(FabArray) 2 0.008991 0.009584 0.01278 0.38% Castro::check_for_nan() 20 0.01027 0.01121 0.01236 0.37% MultiFab::contains_nan() 20 0.01024 0.01119 0.01232 0.37% Castro::Castro() 1 0.009937 0.01071 0.01188 0.36% FabArray::setDomainBndry() 41 0.008376 0.0102 0.01109 0.33% Castro::construct_old_source() 50 0.00698 0.00977 0.0106 0.32% Castro::construct_old_gravity_source() 10 0.006934 0.009701 0.01052 0.32% Castro::computeNewDt() 9 0.0087 0.008711 0.008726 0.26% Castro::initMFs() 1 0.006436 0.007159 0.008439 0.25% AmrLevel::AmrLevel(dm) 1 0.005241 0.005797 0.006683 0.20% StateData::define() 4 0.005231 0.005787 0.006667 0.20% Other 256 0.01375 0.0235 0.02775 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 39 B 58 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8662 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6765 KiB 6769 KiB 6776 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7127 KiB 7134 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4570 KiB 4592 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 222 KiB 244 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2805 KiB 2809 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 236 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized