Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:49 UTC on 2025-05-05. Successfully read inputs file ... Castro git describe: 25.05 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014598149 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342247866 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.330976113 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.309185869 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309746004 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.338839551 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305412428 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299503978 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302412017 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298391609 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297016151 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.088125862 seconds Ending run at 05:18:52 UTC on 2025-05-05. Run time = 3.399888484 Run time without initialization = 3.226943694 Average number of zones advanced per microsecond: 0.812 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3941 ... 3.3978 ... 3.4002 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2033 2.2210 2.2538 66.29% Gravity::make_radial_gravity() 21 0.2886 0.2918 0.2953 8.69% Castro::initData() 1 0.03912 0.0719 0.101 2.97% check_for_negative_density() 10 0.0456 0.08004 0.09838 2.89% Amr::writePlotFile() 2 0.08804 0.09083 0.09331 2.74% Castro::estTimeStep() 21 0.0267 0.05277 0.08385 2.47% FabArray::ParallelCopy_finish() 41 0.03919 0.046 0.08076 2.38% amrex::Copy() 193 0.06091 0.0724 0.07657 2.25% FabArray::setVal() 143 0.0422 0.06645 0.07253 2.13% Castro::normalize_species() 62 0.04527 0.05092 0.05905 1.74% Castro::reset_internal_energy(Fab) 1008 0.04206 0.04501 0.04721 1.39% FabArray::ParallelCopy_nowait() 41 0.03441 0.03954 0.04163 1.22% FillPatchIterator::Initialize 41 0.03033 0.03329 0.03486 1.03% StateData::FillBoundary(geom) 41 0.03082 0.03246 0.03431 1.01% Gravity::interpolate_monopole_grav() 21 0.02627 0.02668 0.02707 0.80% Castro::construct_new_gravity_source() 10 0.02183 0.02303 0.0241 0.71% Castro::computeTemp() 63 0.01703 0.01798 0.0188 0.55% Castro::initialize_do_advance() 10 0.01579 0.0161 0.01675 0.49% Castro::initialize_advance() 10 0.005473 0.01051 0.01385 0.41% Castro::initMFs() 1 0.008599 0.0101 0.01298 0.38% FabArray::Saxpy() 20 0.01078 0.01175 0.01265 0.37% VisMF::Write(FabArray) 2 0.008596 0.009818 0.0123 0.36% MultiFab::contains_nan() 20 0.01063 0.01105 0.01155 0.34% FabArray::setDomainBndry() 41 0.008384 0.00974 0.01095 0.32% StateData::define() 4 0.006734 0.008107 0.01052 0.31% Castro::construct_old_gravity_source() 10 0.005924 0.00952 0.01026 0.30% Castro::construct_new_source() 50 0.005661 0.006083 0.006488 0.19% Amr::coarseTimeStep() 10 0.001434 0.003484 0.004927 0.14% main() 1 0.003476 0.004104 0.004481 0.13% Gravity::get_new_grav_vector() 11 0.00265 0.003269 0.003608 0.11% Gravity::get_old_grav_vector() 10 0.001847 0.002071 0.002348 0.07% AmrLevel::FillPatch() 41 0.0007643 0.00111 0.001619 0.05% Castro::finalize_do_advance() 10 0.0005553 0.001184 0.001549 0.05% Amr::timeStep() 10 0.0001367 0.0001763 0.0003782 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002844 0.0002977 0.0003203 0.01% Castro::clean_state() 62 0.0001427 0.0001605 0.0001852 0.01% Castro::do_advance_ctu() 10 0.0001282 0.0001494 0.000158 0.00% StateDataPhysBCFunct::() 41 9.716e-05 0.0001059 0.0001339 0.00% FillPatchIterator::FillFromLevel0() 41 8.688e-05 0.0001008 0.0001135 0.00% Castro::Castro() 1 4.018e-05 6.721e-05 0.0001042 0.00% Castro::do_old_sources() 10 7.637e-05 8.582e-05 9.194e-05 0.00% FabArray::ParallelCopy() 41 7.821e-05 8.47e-05 9.061e-05 0.00% FillPatchSingleLevel 41 5.717e-05 6.398e-05 7.661e-05 0.00% Amr::FinalizeInit() 1 3.486e-06 1.31e-05 7.464e-05 0.00% Castro::construct_old_source() 50 4.75e-05 6.132e-05 7.311e-05 0.00% Castro::apply_source_to_state() 20 3.558e-05 4.675e-05 7.185e-05 0.00% Castro::do_new_sources() 10 5.248e-05 5.828e-05 6.312e-05 0.00% Amr::defBaseLevel() 1 3.643e-05 4.447e-05 5.904e-05 0.00% Castro::subcycle_advance_ctu() 10 3.627e-05 4.175e-05 5.291e-05 0.00% Castro::advance() 10 3.698e-05 4.5e-05 4.873e-05 0.00% Castro::construct_old_gravity() 10 3.396e-05 3.702e-05 4.052e-05 0.00% Castro::construct_new_gravity() 10 2.75e-05 3.166e-05 3.784e-05 0.00% Castro::check_for_nan() 20 2.557e-05 2.796e-05 3.169e-05 0.00% Castro::expand_state() 10 2.286e-05 2.586e-05 3.13e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.077e-06 1.368e-05 2.305e-05 0.00% Castro::post_init() 1 1.357e-05 1.581e-05 1.896e-05 0.00% Castro::post_timestep() 10 1.259e-05 1.606e-05 1.87e-05 0.00% Castro::computeNewDt() 9 9.611e-06 1.023e-05 1.091e-05 0.00% Amr::InitializeInit() 1 2.659e-06 3.533e-06 5.663e-06 0.00% Castro::computeInitialDt() 2 2.992e-06 3.793e-06 4.586e-06 0.00% Amr::init() 1 1.545e-06 1.841e-06 2.908e-06 0.00% Amr::initialInit() 1 1.497e-06 1.757e-06 2.13e-06 0.00% Other 256 0.01091 0.01584 0.01971 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.394 3.398 3.4 100.00% Amr::coarseTimeStep() 10 3.134 3.134 3.134 92.18% Amr::timeStep() 10 3.12 3.121 3.123 91.85% Castro::advance() 10 3.103 3.104 3.105 91.31% Castro::subcycle_advance_ctu() 10 3.027 3.033 3.054 89.83% Castro::do_advance_ctu() 10 3.027 3.033 3.054 89.83% Castro::construct_ctu_hydro_source() 10 2.32 2.323 2.327 68.42% Gravity::make_radial_gravity() 21 0.3033 0.3066 0.309 9.09% AmrLevel::FillPatch() 41 0.1819 0.192 0.2207 6.49% Gravity::get_new_grav_vector() 11 0.2009 0.2036 0.2057 6.05% FillPatchIterator::Initialize 41 0.1528 0.1615 0.1923 5.65% Castro::initialize_do_advance() 10 0.1548 0.1622 0.1859 5.47% Castro::construct_old_gravity() 10 0.1796 0.1822 0.1857 5.46% Gravity::get_old_grav_vector() 10 0.179 0.1815 0.1851 5.44% Castro::construct_new_gravity() 10 0.1792 0.1815 0.1832 5.39% Amr::init() 1 0.1677 0.1708 0.1729 5.08% Amr::initialInit() 1 0.1527 0.156 0.1581 4.65% FillPatchIterator::FillFromLevel0() 41 0.113 0.1184 0.1485 4.37% FillPatchSingleLevel 41 0.1128 0.1183 0.1484 4.36% Amr::InitializeInit() 1 0.06945 0.1029 0.1318 3.88% Amr::defBaseLevel() 1 0.06944 0.1029 0.1318 3.88% Castro::clean_state() 62 0.1096 0.1193 0.1291 3.80% Castro::expand_state() 10 0.1029 0.1093 0.1274 3.75% FabArray::ParallelCopy() 41 0.07994 0.08571 0.1154 3.39% Castro::initData() 1 0.0433 0.07621 0.1057 3.11% Amr::writePlotFile() 2 0.1029 0.1031 0.1035 3.04% check_for_negative_density() 10 0.0456 0.08004 0.09838 2.89% Castro::do_old_sources() 10 0.08919 0.0908 0.09284 2.73% Amr::FinalizeInit() 1 0.02589 0.05306 0.08679 2.55% Castro::estTimeStep() 21 0.0267 0.05277 0.08385 2.47% FabArray::ParallelCopy_finish() 41 0.03919 0.046 0.08076 2.38% amrex::Copy() 193 0.06091 0.0724 0.07657 2.25% Castro::initialize_advance() 10 0.04629 0.06827 0.07411 2.18% FabArray::setVal() 143 0.0422 0.06645 0.07253 2.13% Castro::do_new_sources() 10 0.05844 0.06361 0.06669 1.96% Castro::computeTemp() 63 0.05938 0.06329 0.066 1.94% Castro::computeInitialDt() 2 0.002205 0.0291 0.06269 1.84% Castro::normalize_species() 62 0.04527 0.05092 0.05905 1.74% Castro::reset_internal_energy(MultiFab) 63 0.04235 0.04531 0.04753 1.40% Castro::reset_internal_energy(Fab) 1008 0.04206 0.04501 0.04721 1.39% FabArray::ParallelCopy_nowait() 41 0.03451 0.03962 0.04171 1.23% StateDataPhysBCFunct::() 41 0.03093 0.03256 0.03441 1.01% StateData::FillBoundary(geom) 41 0.03082 0.03246 0.03431 1.01% Castro::construct_new_source() 50 0.02749 0.02912 0.03029 0.89% Gravity::interpolate_monopole_grav() 21 0.02627 0.02668 0.02707 0.80% Castro::construct_new_gravity_source() 10 0.02183 0.02303 0.0241 0.71% Castro::post_init() 1 0.02292 0.02333 0.0237 0.70% Castro::finalize_do_advance() 10 0.01363 0.01626 0.02019 0.59% Castro::Castro() 1 0.01398 0.01532 0.01864 0.55% Castro::post_timestep() 10 0.01495 0.01662 0.01839 0.54% Castro::initMFs() 1 0.008599 0.0101 0.01298 0.38% Castro::apply_source_to_state() 20 0.01082 0.0118 0.01272 0.37% FabArray::Saxpy() 20 0.01078 0.01175 0.01265 0.37% VisMF::Write(FabArray) 2 0.008596 0.009818 0.0123 0.36% Castro::check_for_nan() 20 0.01066 0.01108 0.01157 0.34% MultiFab::contains_nan() 20 0.01063 0.01105 0.01155 0.34% FabArray::setDomainBndry() 41 0.008384 0.00974 0.01095 0.32% AmrLevel::AmrLevel(dm) 1 0.006744 0.008121 0.01054 0.31% StateData::define() 4 0.006734 0.008107 0.01052 0.31% Castro::construct_old_source() 50 0.005972 0.009581 0.01032 0.30% Castro::construct_old_gravity_source() 10 0.005924 0.00952 0.01026 0.30% Castro::computeNewDt() 9 0.008607 0.008613 0.008618 0.25% Other 256 0.01525 0.02397 0.03065 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8643 KiB 8652 KiB 8659 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6769 KiB 6776 KiB 6783 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7124 KiB 7133 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4445 KiB 4459 KiB 4491 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 201 KiB 214 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2737 KiB 2740 KiB 2743 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 230 KiB 232 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 39 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2026 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 76 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 68 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized