Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:02 UTC on 2025-05-06. Successfully read inputs file ... Castro git describe: 25.05 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014471142 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350629932 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.336670067 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314786007 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315080516 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.358664306 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307077032 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299169438 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300040948 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302964133 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302810578 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.344583835 seconds Ending run at 05:19:05 UTC on 2025-05-06. Run time = 3.724041275 Run time without initialization = 3.537558303 Average number of zones advanced per microsecond: 0.741 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.7230 ... 3.7235 ... 3.7241 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1934 2.2277 2.2621 60.74% VisMF::Write(FabArray) 2 0.008582 0.1359 0.349 9.37% Amr::writePlotFile() 2 0.007464 0.2205 0.3489 9.37% Gravity::make_radial_gravity() 21 0.2979 0.3065 0.3213 8.63% check_for_negative_density() 10 0.05185 0.08665 0.1255 3.37% Castro::initData() 1 0.03707 0.07414 0.1216 3.26% Castro::estTimeStep() 21 0.03353 0.07864 0.1195 3.21% amrex::Copy() 193 0.06739 0.08147 0.09429 2.53% FabArray::ParallelCopy_finish() 41 0.03772 0.05791 0.0933 2.51% FabArray::setVal() 143 0.05239 0.06545 0.07229 1.94% Castro::normalize_species() 62 0.0457 0.04852 0.05112 1.37% Castro::reset_internal_energy(Fab) 1008 0.04315 0.04717 0.04988 1.34% FabArray::ParallelCopy_nowait() 41 0.03737 0.04093 0.04317 1.16% FillPatchIterator::Initialize 41 0.02835 0.0329 0.0357 0.96% StateData::FillBoundary(geom) 41 0.0294 0.03214 0.03557 0.96% Gravity::interpolate_monopole_grav() 21 0.02652 0.02761 0.03101 0.83% Castro::construct_new_gravity_source() 10 0.02217 0.02385 0.02598 0.70% Castro::computeTemp() 63 0.01759 0.01853 0.01914 0.51% Castro::initialize_do_advance() 10 0.01192 0.01686 0.01848 0.50% Castro::initialize_advance() 10 0.005299 0.01082 0.01343 0.36% FabArray::Saxpy() 20 0.01032 0.01191 0.01294 0.35% MultiFab::contains_nan() 20 0.0104 0.01135 0.01267 0.34% FabArray::setDomainBndry() 41 0.007508 0.009598 0.01073 0.29% Castro::construct_old_gravity_source() 10 0.007068 0.008908 0.009572 0.26% Castro::initMFs() 1 0.006457 0.00696 0.007643 0.21% Castro::construct_new_source() 50 0.005646 0.006091 0.006388 0.17% main() 1 0.003625 0.003966 0.00456 0.12% Amr::coarseTimeStep() 10 0.001844 0.002767 0.003917 0.11% Gravity::get_new_grav_vector() 11 0.002939 0.00336 0.003881 0.10% Gravity::get_old_grav_vector() 10 0.001439 0.00205 0.002365 0.06% Castro::finalize_do_advance() 10 0.0005078 0.001052 0.001146 0.03% AmrLevel::FillPatch() 41 0.0007952 0.0008367 0.0008915 0.02% Amr::timeStep() 10 0.0001355 0.0001914 0.0004582 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002753 0.0002934 0.0003144 0.01% Castro::clean_state() 62 0.0001482 0.0001659 0.0001871 0.01% Castro::do_advance_ctu() 10 0.0001373 0.0001624 0.0001838 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001025 0.0001097 0.0001209 0.00% StateDataPhysBCFunct::() 41 9.107e-05 0.000105 0.0001162 0.00% Castro::do_old_sources() 10 7.854e-05 9.016e-05 0.0001064 0.00% FabArray::ParallelCopy() 41 8.02e-05 8.903e-05 0.0001008 0.00% Castro::Castro() 1 5.213e-05 6.468e-05 8.448e-05 0.00% Castro::construct_old_source() 50 4.685e-05 6.452e-05 8.376e-05 0.00% Amr::FinalizeInit() 1 3.736e-06 1.443e-05 8.345e-05 0.00% FillPatchSingleLevel 41 6.032e-05 6.815e-05 7.647e-05 0.00% Castro::do_new_sources() 10 5.223e-05 5.838e-05 6.502e-05 0.00% Castro::apply_source_to_state() 20 4.201e-05 4.889e-05 5.893e-05 0.00% Amr::defBaseLevel() 1 3.9e-05 4.648e-05 5.86e-05 0.00% Castro::subcycle_advance_ctu() 10 4.297e-05 5e-05 5.679e-05 0.00% Castro::advance() 10 4.12e-05 4.799e-05 5.555e-05 0.00% Castro::construct_old_gravity() 10 3.448e-05 3.815e-05 4.593e-05 0.00% Castro::expand_state() 10 2.28e-05 2.847e-05 3.968e-05 0.00% Castro::construct_new_gravity() 10 3.012e-05 3.195e-05 3.507e-05 0.00% Castro::check_for_nan() 20 2.471e-05 2.725e-05 2.843e-05 0.00% Castro::post_init() 1 1.491e-05 1.738e-05 2.276e-05 0.00% Castro::post_timestep() 10 1.59e-05 1.63e-05 1.738e-05 0.00% Castro::computeNewDt() 9 8.969e-06 9.996e-06 1.307e-05 0.00% Amr::InitializeInit() 1 2.759e-06 3.433e-06 5.915e-06 0.00% Castro::computeInitialDt() 2 3.221e-06 3.682e-06 4.177e-06 0.00% Amr::init() 1 2.008e-06 2.37e-06 3.238e-06 0.00% Amr::initialInit() 1 1.776e-06 2.141e-06 2.956e-06 0.00% Other 261 0.01616 0.0186 0.02099 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.723 3.723 3.724 100.00% Amr::coarseTimeStep() 10 3.188 3.188 3.188 85.62% Amr::timeStep() 10 3.174 3.175 3.176 85.28% Castro::advance() 10 3.158 3.158 3.159 84.81% Castro::subcycle_advance_ctu() 10 3.081 3.086 3.101 83.26% Castro::do_advance_ctu() 10 3.081 3.086 3.101 83.26% Castro::construct_ctu_hydro_source() 10 2.333 2.336 2.341 62.86% Amr::writePlotFile() 2 0.359 0.3592 0.3596 9.66% VisMF::Write(FabArray) 2 0.008582 0.1359 0.349 9.37% Gravity::make_radial_gravity() 21 0.3141 0.3226 0.3358 9.02% AmrLevel::FillPatch() 41 0.185 0.2057 0.2205 5.92% Gravity::get_new_grav_vector() 11 0.2102 0.2114 0.214 5.75% Castro::construct_old_gravity() 10 0.1928 0.1979 0.2089 5.61% Gravity::get_old_grav_vector() 10 0.1921 0.1973 0.2083 5.59% FillPatchIterator::Initialize 41 0.1532 0.1739 0.1964 5.27% Castro::construct_new_gravity() 10 0.1868 0.1881 0.19 5.10% Amr::init() 1 0.1859 0.1861 0.187 5.02% Amr::initialInit() 1 0.1711 0.1717 0.1727 4.64% Castro::initialize_do_advance() 10 0.1602 0.1631 0.1669 4.48% FillPatchIterator::FillFromLevel0() 41 0.1141 0.1314 0.1605 4.31% FillPatchSingleLevel 41 0.114 0.1313 0.1604 4.31% Amr::InitializeInit() 1 0.05718 0.0953 0.1441 3.87% Amr::defBaseLevel() 1 0.05718 0.0953 0.1441 3.87% FabArray::ParallelCopy() 41 0.08032 0.09902 0.1308 3.51% Castro::initData() 1 0.04073 0.07809 0.1258 3.38% Castro::clean_state() 62 0.1123 0.1199 0.1256 3.37% check_for_negative_density() 10 0.05185 0.08665 0.1255 3.37% Castro::estTimeStep() 21 0.03353 0.07864 0.1195 3.21% Castro::expand_state() 10 0.1035 0.109 0.1187 3.19% Amr::FinalizeInit() 1 0.02706 0.07636 0.1145 3.07% Castro::do_old_sources() 10 0.09275 0.1003 0.1053 2.83% amrex::Copy() 193 0.06739 0.08147 0.09429 2.53% FabArray::ParallelCopy_finish() 41 0.03772 0.05791 0.0933 2.51% Castro::computeInitialDt() 2 0.002345 0.05123 0.08924 2.40% Castro::initialize_advance() 10 0.05347 0.0689 0.07366 1.98% FabArray::setVal() 143 0.05239 0.06545 0.07229 1.94% Castro::computeTemp() 63 0.06102 0.06599 0.06907 1.85% Castro::do_new_sources() 10 0.05968 0.0632 0.06744 1.81% Castro::normalize_species() 62 0.0457 0.04852 0.05112 1.37% Castro::reset_internal_energy(MultiFab) 63 0.04343 0.04747 0.05018 1.35% Castro::reset_internal_energy(Fab) 1008 0.04315 0.04717 0.04988 1.34% FabArray::ParallelCopy_nowait() 41 0.03746 0.04102 0.04326 1.16% StateDataPhysBCFunct::() 41 0.02951 0.03224 0.03567 0.96% StateData::FillBoundary(geom) 41 0.0294 0.03214 0.03557 0.96% Castro::construct_new_source() 50 0.0282 0.02994 0.03231 0.87% Gravity::interpolate_monopole_grav() 21 0.02652 0.02761 0.03101 0.83% Castro::construct_new_gravity_source() 10 0.02217 0.02385 0.02598 0.70% Castro::post_init() 1 0.02403 0.02449 0.02481 0.67% Castro::finalize_do_advance() 10 0.01435 0.01893 0.02225 0.60% Castro::post_timestep() 10 0.01577 0.01659 0.01766 0.47% Castro::apply_source_to_state() 20 0.01036 0.01196 0.013 0.35% FabArray::Saxpy() 20 0.01032 0.01191 0.01294 0.35% Castro::check_for_nan() 20 0.01043 0.01138 0.0127 0.34% MultiFab::contains_nan() 20 0.0104 0.01135 0.01267 0.34% Castro::Castro() 1 0.009633 0.01085 0.01182 0.32% FabArray::setDomainBndry() 41 0.007508 0.009598 0.01073 0.29% Castro::construct_old_source() 50 0.007115 0.008972 0.009639 0.26% Castro::construct_old_gravity_source() 10 0.007068 0.008908 0.009572 0.26% Castro::computeNewDt() 9 0.009513 0.00954 0.009564 0.26% Castro::initMFs() 1 0.006457 0.00696 0.007643 0.21% Other 261 0.02629 0.03001 0.03397 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 13 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8665 KiB 8674 KiB 8677 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6774 KiB 6780 KiB 6784 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4134 KiB 4140 KiB 4161 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 186 KiB 204 KiB 221 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 136 KiB 342 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2541 KiB 2543 KiB 2544 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 214 KiB 220 KiB 229 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 32 KiB 39 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 72 KiB 72 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized