Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:37 UTC on 2025-05-07. Successfully read inputs file ... Castro git describe: 25.05 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014611468 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355125652 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.349283248 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.321087473 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318966091 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363652651 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30799295 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.356057723 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.318388253 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302611341 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.304755024 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009127778 seconds Ending run at 05:20:40 UTC on 2025-05-07. Run time = 3.478565401 Run time without initialization = 3.312873059 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4765 ... 3.4775 ... 3.4788 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1414 2.2420 2.3281 66.92% Gravity::make_radial_gravity() 21 0.2953 0.3099 0.3239 9.31% check_for_negative_density() 10 0.07169 0.1601 0.2605 7.49% Castro::initData() 1 0.03729 0.0706 0.102 2.93% FabArray::ParallelCopy_finish() 41 0.04543 0.06292 0.09796 2.82% Castro::estTimeStep() 21 0.02954 0.06159 0.09389 2.70% amrex::Copy() 193 0.07223 0.0839 0.09139 2.63% FabArray::setVal() 143 0.0618 0.06881 0.07558 2.17% Castro::reset_internal_energy(Fab) 1008 0.04324 0.0464 0.04807 1.38% Castro::normalize_species() 62 0.04581 0.04657 0.04787 1.38% FabArray::ParallelCopy_nowait() 41 0.03624 0.04273 0.04626 1.33% FillPatchIterator::Initialize 41 0.02776 0.03479 0.03769 1.08% StateData::FillBoundary(geom) 41 0.03158 0.03348 0.03719 1.07% Gravity::interpolate_monopole_grav() 21 0.02668 0.02741 0.02817 0.81% Castro::construct_new_gravity_source() 10 0.02324 0.02509 0.02617 0.75% Castro::computeTemp() 63 0.0176 0.01835 0.01952 0.56% Castro::initialize_do_advance() 10 0.01445 0.01756 0.01941 0.56% FabArray::Saxpy() 20 0.01036 0.01281 0.01479 0.43% MultiFab::contains_nan() 20 0.01082 0.01164 0.01283 0.37% VisMF::Write(FabArray) 2 0.009376 0.01011 0.01276 0.37% Castro::initialize_advance() 10 0.00493 0.01026 0.01258 0.36% FabArray::setDomainBndry() 41 0.007252 0.01084 0.01246 0.36% Amr::writePlotFile() 2 0.008114 0.01113 0.01209 0.35% Castro::construct_old_gravity_source() 10 0.007338 0.009623 0.01085 0.31% Castro::initMFs() 1 0.006722 0.006802 0.006911 0.20% Castro::construct_new_source() 50 0.005914 0.006357 0.006627 0.19% main() 1 0.00326 0.004459 0.005273 0.15% Gravity::get_new_grav_vector() 11 0.002974 0.00377 0.004182 0.12% Gravity::get_old_grav_vector() 10 0.001707 0.002185 0.002723 0.08% Amr::coarseTimeStep() 10 0.001022 0.001651 0.002146 0.06% AmrLevel::FillPatch() 41 0.001003 0.001261 0.001627 0.05% Castro::finalize_do_advance() 10 0.001203 0.00126 0.001353 0.04% Amr::timeStep() 10 0.0001535 0.000207 0.0004325 0.01% StateDataPhysBCFunct::() 41 0.000101 0.0002481 0.0004124 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002915 0.0003009 0.0003176 0.01% Castro::do_new_sources() 10 5.031e-05 0.0001403 0.0003146 0.01% Castro::do_advance_ctu() 10 0.0001504 0.0002268 0.0003146 0.01% Castro::clean_state() 62 0.0001416 0.0001655 0.0001862 0.01% Castro::Castro() 1 7.09e-05 9.175e-05 0.0001253 0.00% Castro::do_old_sources() 10 6.31e-05 9.624e-05 0.0001231 0.00% FillPatchIterator::FillFromLevel0() 41 8.701e-05 0.0001016 0.0001129 0.00% FabArray::ParallelCopy() 41 7.879e-05 9.245e-05 0.0001097 0.00% Castro::construct_old_source() 50 4.012e-05 7.573e-05 9.524e-05 0.00% Amr::FinalizeInit() 1 3.199e-06 1.472e-05 8.211e-05 0.00% FillPatchSingleLevel 41 5.914e-05 6.579e-05 7.644e-05 0.00% Castro::subcycle_advance_ctu() 10 3.755e-05 5.508e-05 7.029e-05 0.00% Castro::advance() 10 4.156e-05 5.277e-05 6.921e-05 0.00% Castro::construct_new_gravity() 10 3.144e-05 4.137e-05 6.577e-05 0.00% Castro::apply_source_to_state() 20 3.638e-05 4.71e-05 5.287e-05 0.00% Amr::defBaseLevel() 1 3.751e-05 4.281e-05 4.974e-05 0.00% Castro::construct_old_gravity() 10 3.266e-05 4.25e-05 4.942e-05 0.00% Castro::check_for_nan() 20 2.394e-05 2.811e-05 3.232e-05 0.00% Castro::expand_state() 10 1.919e-05 2.759e-05 3.147e-05 0.00% Castro::post_init() 1 1.492e-05 1.716e-05 2.081e-05 0.00% Castro::post_timestep() 10 1.491e-05 1.694e-05 2.021e-05 0.00% Castro::computeNewDt() 9 9.936e-06 1.045e-05 1.092e-05 0.00% Amr::InitializeInit() 1 2.345e-06 3.605e-06 5.861e-06 0.00% Castro::computeInitialDt() 2 3.719e-06 4.324e-06 5.432e-06 0.00% Amr::initialInit() 1 1.495e-06 1.957e-06 2.589e-06 0.00% Amr::init() 1 1.615e-06 2.03e-06 2.462e-06 0.00% Other 261 0.01635 0.01894 0.0214 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.476 3.477 3.479 100.00% Amr::coarseTimeStep() 10 3.299 3.299 3.299 94.82% Amr::timeStep() 10 3.287 3.287 3.288 94.51% Castro::advance() 10 3.271 3.271 3.271 94.04% Castro::subcycle_advance_ctu() 10 3.192 3.198 3.214 92.39% Castro::do_advance_ctu() 10 3.192 3.198 3.214 92.39% Castro::construct_ctu_hydro_source() 10 2.412 2.423 2.428 69.79% Gravity::make_radial_gravity() 21 0.3126 0.3265 0.3355 9.64% check_for_negative_density() 10 0.07169 0.1601 0.2605 7.49% AmrLevel::FillPatch() 41 0.2087 0.2199 0.2359 6.78% Gravity::get_new_grav_vector() 11 0.2143 0.2152 0.2169 6.23% Castro::construct_old_gravity() 10 0.1885 0.1986 0.2061 5.93% Gravity::get_old_grav_vector() 10 0.1876 0.1979 0.2055 5.91% FillPatchIterator::Initialize 41 0.1732 0.1854 0.2024 5.82% Castro::construct_new_gravity() 10 0.1914 0.1927 0.1939 5.57% Castro::initialize_do_advance() 10 0.1702 0.1735 0.1814 5.21% FillPatchIterator::FillFromLevel0() 41 0.1237 0.1397 0.1662 4.78% FillPatchSingleLevel 41 0.1236 0.1396 0.1661 4.77% Amr::init() 1 0.1643 0.165 0.1654 4.76% Amr::initialInit() 1 0.1495 0.1502 0.1507 4.33% FabArray::ParallelCopy() 41 0.09085 0.1058 0.1344 3.86% Castro::expand_state() 10 0.1138 0.1178 0.1269 3.65% Amr::InitializeInit() 1 0.05893 0.09246 0.1242 3.57% Amr::defBaseLevel() 1 0.05893 0.09245 0.1242 3.57% Castro::clean_state() 62 0.1132 0.1171 0.121 3.48% Castro::do_old_sources() 10 0.1025 0.1062 0.1188 3.42% Castro::initData() 1 0.04129 0.07458 0.106 3.05% FabArray::ParallelCopy_finish() 41 0.04543 0.06292 0.09796 2.82% Castro::estTimeStep() 21 0.02954 0.06159 0.09389 2.70% Amr::FinalizeInit() 1 0.02645 0.05772 0.09168 2.64% amrex::Copy() 193 0.07223 0.0839 0.09139 2.63% Castro::initialize_advance() 10 0.05351 0.06908 0.07593 2.18% FabArray::setVal() 143 0.0618 0.06881 0.07558 2.17% Castro::computeTemp() 63 0.06115 0.06505 0.06782 1.95% Castro::computeInitialDt() 2 0.00216 0.03355 0.06748 1.94% Castro::do_new_sources() 10 0.06318 0.0652 0.06689 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04355 0.0467 0.04836 1.39% Castro::reset_internal_energy(Fab) 1008 0.04324 0.0464 0.04807 1.38% Castro::normalize_species() 62 0.04581 0.04657 0.04787 1.38% FabArray::ParallelCopy_nowait() 41 0.03632 0.04282 0.04636 1.33% StateDataPhysBCFunct::() 41 0.03169 0.03373 0.03752 1.08% StateData::FillBoundary(geom) 41 0.03158 0.03348 0.03719 1.07% Castro::construct_new_source() 50 0.02915 0.03145 0.03275 0.94% Gravity::interpolate_monopole_grav() 21 0.02668 0.02741 0.02817 0.81% Castro::construct_new_gravity_source() 10 0.02324 0.02509 0.02617 0.75% Amr::writePlotFile() 2 0.02396 0.02407 0.02443 0.70% Castro::post_init() 1 0.02332 0.02366 0.02377 0.68% Castro::finalize_do_advance() 10 0.01792 0.02064 0.02211 0.64% Castro::post_timestep() 10 0.01539 0.01586 0.01627 0.47% Castro::apply_source_to_state() 20 0.0104 0.01286 0.01484 0.43% FabArray::Saxpy() 20 0.01036 0.01281 0.01479 0.43% Castro::check_for_nan() 20 0.01086 0.01167 0.01286 0.37% MultiFab::contains_nan() 20 0.01082 0.01164 0.01283 0.37% VisMF::Write(FabArray) 2 0.009376 0.01011 0.01276 0.37% FabArray::setDomainBndry() 41 0.007252 0.01084 0.01246 0.36% Castro::Castro() 1 0.011 0.01146 0.01168 0.34% Castro::construct_old_source() 50 0.007378 0.009699 0.01093 0.31% Castro::construct_old_gravity_source() 10 0.007338 0.009623 0.01085 0.31% Castro::computeNewDt() 9 0.008661 0.00867 0.008679 0.25% Castro::initMFs() 1 0.006722 0.006802 0.006911 0.20% Other 261 0.02671 0.03038 0.03399 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 31 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6789 KiB 6795 KiB 6798 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4584 KiB 4594 KiB 4617 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 225 KiB 235 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2821 KiB 2822 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 239 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 45 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 73 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized