Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:51 UTC on 2025-05-08. Successfully read inputs file ... Castro git describe: 25.05 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016706007 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360332267 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.365457016 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.368422745 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.38701613 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.3711888 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.368739011 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.369462399 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.364727582 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.36946173 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.376441135 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011874875 seconds Ending run at 05:19:55 UTC on 2025-05-08. Run time = 3.910482994 Run time without initialization = 3.721099741 Average number of zones advanced per microsecond: 0.704 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.9088 ... 3.9096 ... 3.9105 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3425 2.4665 2.6829 68.61% check_for_negative_density() 10 0.01379 0.2338 0.3611 9.23% Gravity::make_radial_gravity() 21 0.297 0.3057 0.32 8.18% Castro::initData() 1 0.03783 0.07574 0.1218 3.11% amrex::Copy() 193 0.1042 0.11 0.1143 2.92% Castro::estTimeStep() 21 0.021 0.07131 0.1111 2.84% FabArray::setVal() 143 0.08832 0.09088 0.09369 2.40% FabArray::ParallelCopy_nowait() 41 0.05925 0.06132 0.06335 1.62% FillPatchIterator::Initialize 41 0.04501 0.05011 0.05802 1.48% FabArray::ParallelCopy_finish() 41 0.04184 0.04861 0.0549 1.40% Castro::normalize_species() 62 0.04652 0.04783 0.05076 1.30% Castro::reset_internal_energy(Fab) 1008 0.04786 0.04875 0.04974 1.27% StateData::FillBoundary(geom) 41 0.03555 0.03763 0.04028 1.03% Castro::construct_new_gravity_source() 10 0.02962 0.0309 0.03378 0.86% Castro::initialize_do_advance() 10 0.01933 0.02494 0.0281 0.72% Gravity::interpolate_monopole_grav() 21 0.02674 0.02717 0.02772 0.71% Castro::computeTemp() 63 0.01897 0.01928 0.01957 0.50% FabArray::Saxpy() 20 0.01522 0.01815 0.0195 0.50% MultiFab::contains_nan() 20 0.01304 0.01459 0.01681 0.43% FabArray::setDomainBndry() 41 0.01472 0.01573 0.01672 0.43% Castro::construct_old_gravity_source() 10 0.01329 0.0148 0.01628 0.42% VisMF::Write(FabArray) 2 0.01012 0.01172 0.01549 0.40% Castro::initialize_advance() 10 0.01317 0.01423 0.01508 0.39% Amr::writePlotFile() 2 0.009124 0.01321 0.01467 0.38% Castro::construct_new_source() 50 0.007683 0.008112 0.008503 0.22% Castro::initMFs() 1 0.006671 0.0073 0.007989 0.20% main() 1 0.006456 0.007022 0.007434 0.19% Gravity::get_new_grav_vector() 11 0.004255 0.005033 0.005996 0.15% Gravity::get_old_grav_vector() 10 0.002609 0.003317 0.00419 0.11% Amr::coarseTimeStep() 10 0.0009594 0.001386 0.001859 0.05% Castro::finalize_do_advance() 10 0.001274 0.001347 0.001758 0.04% AmrLevel::FillPatch() 41 0.001037 0.001165 0.001226 0.03% Amr::timeStep() 10 0.00014 0.0002119 0.000542 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002911 0.0003129 0.0003541 0.01% Castro::clean_state() 62 0.0001667 0.000197 0.0002319 0.01% Castro::do_advance_ctu() 10 0.0001795 0.0002036 0.0002221 0.01% Castro::do_old_sources() 10 9.123e-05 0.000127 0.0001592 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001159 0.0001349 0.0001525 0.00% StateDataPhysBCFunct::() 41 0.0001191 0.0001321 0.0001393 0.00% FabArray::ParallelCopy() 41 0.0001027 0.0001171 0.0001322 0.00% Castro::construct_old_source() 50 7.008e-05 0.0001004 0.0001267 0.00% Amr::FinalizeInit() 1 3.956e-06 1.844e-05 9.758e-05 0.00% FillPatchSingleLevel 41 7.546e-05 8.379e-05 9.507e-05 0.00% Castro::do_new_sources() 10 5.846e-05 7.789e-05 9.443e-05 0.00% Castro::Castro() 1 4.1e-05 6.03e-05 8.666e-05 0.00% Castro::apply_source_to_state() 20 5.693e-05 6.474e-05 7.6e-05 0.00% Castro::subcycle_advance_ctu() 10 4.589e-05 5.92e-05 7.418e-05 0.00% Castro::construct_old_gravity() 10 4.5e-05 5.255e-05 7.121e-05 0.00% Castro::advance() 10 4.766e-05 5.821e-05 7.101e-05 0.00% Castro::construct_new_gravity() 10 3.313e-05 3.982e-05 5.559e-05 0.00% Amr::defBaseLevel() 1 3.775e-05 4.043e-05 4.302e-05 0.00% Castro::expand_state() 10 3.236e-05 3.579e-05 4.242e-05 0.00% Castro::check_for_nan() 20 3.062e-05 3.341e-05 3.753e-05 0.00% Castro::post_timestep() 10 1.453e-05 1.973e-05 2.422e-05 0.00% Castro::post_init() 1 1.443e-05 1.716e-05 2.272e-05 0.00% Castro::computeNewDt() 9 9.781e-06 1.1e-05 1.183e-05 0.00% Amr::InitializeInit() 1 2.632e-06 3.361e-06 5.635e-06 0.00% Castro::computeInitialDt() 2 3.169e-06 3.653e-06 4.152e-06 0.00% Amr::init() 1 1.599e-06 2.206e-06 3.331e-06 0.00% Amr::initialInit() 1 1.402e-06 1.842e-06 2.358e-06 0.00% Other 261 0.01662 0.01966 0.02221 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.909 3.91 3.911 100.00% Amr::coarseTimeStep() 10 3.702 3.702 3.702 94.66% Amr::timeStep() 10 3.69 3.691 3.691 94.39% Castro::advance() 10 3.674 3.675 3.675 93.98% Castro::subcycle_advance_ctu() 10 3.575 3.58 3.586 91.70% Castro::do_advance_ctu() 10 3.575 3.58 3.586 91.70% Castro::construct_ctu_hydro_source() 10 2.72 2.723 2.727 69.73% check_for_negative_density() 10 0.01379 0.2338 0.3611 9.23% Gravity::make_radial_gravity() 21 0.3181 0.3288 0.344 8.80% AmrLevel::FillPatch() 41 0.242 0.2614 0.2795 7.15% FillPatchIterator::Initialize 41 0.2004 0.214 0.2309 5.90% Gravity::get_new_grav_vector() 11 0.2233 0.2252 0.2275 5.82% Castro::initialize_do_advance() 10 0.1994 0.2126 0.2235 5.71% Castro::construct_old_gravity() 10 0.193 0.2006 0.2123 5.43% Gravity::get_old_grav_vector() 10 0.1918 0.1996 0.2115 5.41% Castro::construct_new_gravity() 10 0.1999 0.202 0.2037 5.21% Amr::init() 1 0.1882 0.1886 0.1892 4.84% Amr::initialInit() 1 0.1713 0.1716 0.1723 4.41% Castro::expand_state() 10 0.1298 0.1449 0.1589 4.06% FillPatchIterator::FillFromLevel0() 41 0.1379 0.1481 0.1581 4.04% FillPatchSingleLevel 41 0.1377 0.148 0.158 4.04% Amr::InitializeInit() 1 0.05815 0.09718 0.1442 3.69% Amr::defBaseLevel() 1 0.05815 0.09718 0.1442 3.69% Castro::do_old_sources() 10 0.1273 0.1296 0.1317 3.37% Castro::initData() 1 0.04193 0.07963 0.1257 3.21% Castro::clean_state() 62 0.1207 0.1223 0.1254 3.21% FabArray::ParallelCopy() 41 0.1013 0.1102 0.1185 3.03% amrex::Copy() 193 0.1042 0.11 0.1143 2.92% Amr::FinalizeInit() 1 0.02721 0.07445 0.1133 2.90% Castro::estTimeStep() 21 0.021 0.07131 0.1111 2.84% Castro::initialize_advance() 10 0.08438 0.0896 0.09523 2.44% FabArray::setVal() 143 0.08832 0.09088 0.09369 2.40% Castro::computeInitialDt() 2 0.002336 0.04949 0.08829 2.26% Castro::do_new_sources() 10 0.07683 0.07798 0.08025 2.05% Castro::computeTemp() 63 0.0673 0.06834 0.06958 1.78% FabArray::ParallelCopy_nowait() 41 0.05936 0.06144 0.06347 1.62% FabArray::ParallelCopy_finish() 41 0.04184 0.04861 0.0549 1.40% Castro::normalize_species() 62 0.04652 0.04783 0.05076 1.30% Castro::reset_internal_energy(MultiFab) 63 0.04817 0.04906 0.05005 1.28% Castro::reset_internal_energy(Fab) 1008 0.04786 0.04875 0.04974 1.27% Castro::construct_new_source() 50 0.03757 0.03902 0.04229 1.08% StateDataPhysBCFunct::() 41 0.03568 0.03777 0.04041 1.03% StateData::FillBoundary(geom) 41 0.03555 0.03763 0.04028 1.03% Castro::construct_new_gravity_source() 10 0.02962 0.0309 0.03378 0.86% Amr::writePlotFile() 2 0.02878 0.02888 0.02898 0.74% Gravity::interpolate_monopole_grav() 21 0.02674 0.02717 0.02772 0.71% Castro::post_init() 1 0.02416 0.02437 0.02456 0.63% Castro::apply_source_to_state() 20 0.01528 0.01821 0.01957 0.50% FabArray::Saxpy() 20 0.01522 0.01815 0.0195 0.50% Castro::check_for_nan() 20 0.01308 0.01463 0.01684 0.43% MultiFab::contains_nan() 20 0.01304 0.01459 0.01681 0.43% FabArray::setDomainBndry() 41 0.01472 0.01573 0.01672 0.43% Castro::post_timestep() 10 0.01584 0.01609 0.01658 0.42% Castro::construct_old_source() 50 0.01336 0.01491 0.01639 0.42% Castro::construct_old_gravity_source() 10 0.01329 0.0148 0.01628 0.42% Castro::finalize_do_advance() 10 0.0119 0.01466 0.01625 0.42% VisMF::Write(FabArray) 2 0.01012 0.01172 0.01549 0.40% Castro::Castro() 1 0.01023 0.0111 0.01197 0.31% Castro::computeNewDt() 9 0.008519 0.008526 0.00853 0.22% Castro::initMFs() 1 0.006671 0.0073 0.007989 0.20% Other 261 0.028 0.03229 0.03658 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 30 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6784 KiB 6789 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4567 KiB 4575 KiB 4582 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 231 KiB 253 KiB 273 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2816 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 207 KiB 214 KiB 224 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 74 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 65 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized