Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:23 UTC on 2025-05-09. Successfully read inputs file ... Castro git describe: 25.05 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01438354 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.36820028 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344444006 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314410419 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314789881 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371757759 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302406718 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295589266 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297034732 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295114696 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.294571445 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007618543 seconds Ending run at 05:19:27 UTC on 2025-05-09. Run time = 3.390800968 Run time without initialization = 3.210910307 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3898 ... 3.3905 ... 3.3915 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1858 2.2138 2.2705 66.95% Gravity::make_radial_gravity() 21 0.294 0.3017 0.3193 9.41% check_for_negative_density() 10 0.0541 0.1196 0.1492 4.40% Castro::initData() 1 0.03743 0.07261 0.1159 3.42% Castro::estTimeStep() 21 0.03315 0.07207 0.1081 3.19% amrex::Copy() 193 0.0666 0.08067 0.0901 2.66% FabArray::ParallelCopy_finish() 41 0.04472 0.05403 0.08909 2.63% FabArray::setVal() 143 0.05501 0.06832 0.07376 2.17% Castro::reset_internal_energy(Fab) 1008 0.04693 0.04812 0.05122 1.51% Castro::normalize_species() 62 0.04716 0.04865 0.05038 1.49% FabArray::ParallelCopy_nowait() 41 0.03561 0.04086 0.04543 1.34% StateData::FillBoundary(geom) 41 0.0292 0.03248 0.0362 1.07% FillPatchIterator::Initialize 41 0.02871 0.03191 0.03458 1.02% Gravity::interpolate_monopole_grav() 21 0.02652 0.0268 0.0271 0.80% Castro::construct_new_gravity_source() 10 0.02192 0.02405 0.02593 0.76% Castro::computeTemp() 63 0.01803 0.01854 0.01925 0.57% Castro::initialize_do_advance() 10 0.01182 0.01588 0.01725 0.51% MultiFab::contains_nan() 20 0.01017 0.01211 0.01509 0.44% FabArray::Saxpy() 20 0.01056 0.01215 0.01351 0.40% Castro::initialize_advance() 10 0.00525 0.0108 0.01334 0.39% VisMF::Write(FabArray) 2 0.009106 0.009646 0.01213 0.36% Amr::writePlotFile() 2 0.007307 0.009985 0.01161 0.34% FabArray::setDomainBndry() 41 0.007524 0.00952 0.01066 0.31% Castro::construct_old_gravity_source() 10 0.006518 0.009234 0.0102 0.30% Castro::initMFs() 1 0.006463 0.006875 0.008617 0.25% Castro::construct_new_source() 50 0.005859 0.006283 0.006565 0.19% main() 1 0.003658 0.003876 0.0044 0.13% Gravity::get_new_grav_vector() 11 0.002736 0.003301 0.003888 0.11% Amr::coarseTimeStep() 10 0.001417 0.00217 0.003188 0.09% Gravity::get_old_grav_vector() 10 0.001634 0.002165 0.002789 0.08% Castro::finalize_do_advance() 10 0.0005447 0.00109 0.001256 0.04% AmrLevel::FillPatch() 41 0.0007681 0.0008778 0.0009819 0.03% Amr::timeStep() 10 0.0001427 0.0001962 0.0004046 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002682 0.0002923 0.0003197 0.01% Castro::do_advance_ctu() 10 0.0001529 0.0001805 0.000201 0.01% Castro::clean_state() 62 0.0001549 0.0001703 0.0001925 0.01% FillPatchIterator::FillFromLevel0() 41 9.864e-05 0.0001141 0.0001476 0.00% StateDataPhysBCFunct::() 41 9.917e-05 0.0001085 0.0001222 0.00% Castro::do_old_sources() 10 9.036e-05 9.788e-05 0.0001094 0.00% Castro::Castro() 1 5.207e-05 7.429e-05 9.944e-05 0.00% FabArray::ParallelCopy() 41 8.395e-05 9.111e-05 9.938e-05 0.00% FillPatchSingleLevel 41 6.046e-05 6.727e-05 8.667e-05 0.00% Castro::construct_old_source() 50 5.863e-05 6.836e-05 7.625e-05 0.00% Amr::FinalizeInit() 1 3.297e-06 1.301e-05 7.287e-05 0.00% Castro::do_new_sources() 10 5.815e-05 6.105e-05 6.741e-05 0.00% Castro::apply_source_to_state() 20 4.113e-05 4.965e-05 6.348e-05 0.00% Castro::subcycle_advance_ctu() 10 4.484e-05 5.149e-05 6.105e-05 0.00% Castro::advance() 10 4.64e-05 5.267e-05 5.865e-05 0.00% Castro::construct_old_gravity() 10 4.464e-05 4.741e-05 5.159e-05 0.00% Amr::defBaseLevel() 1 3.555e-05 4.041e-05 5.062e-05 0.00% Castro::construct_new_gravity() 10 2.646e-05 3.56e-05 4.15e-05 0.00% Castro::check_for_nan() 20 2.374e-05 2.905e-05 3.867e-05 0.00% Castro::expand_state() 10 2.169e-05 2.508e-05 2.885e-05 0.00% Castro::post_init() 1 1.289e-05 1.611e-05 1.942e-05 0.00% Castro::post_timestep() 10 1.462e-05 1.663e-05 1.855e-05 0.00% Castro::computeNewDt() 9 9.517e-06 1.091e-05 1.316e-05 0.00% Amr::initialInit() 1 1.549e-06 2.855e-06 8.358e-06 0.00% Amr::InitializeInit() 1 2.473e-06 3.294e-06 5.594e-06 0.00% Castro::computeInitialDt() 2 3.02e-06 3.6e-06 4.585e-06 0.00% Amr::init() 1 1.525e-06 1.941e-06 2.526e-06 0.00% Other 261 0.01571 0.01835 0.02087 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.39 3.391 3.391 100.00% Amr::coarseTimeStep() 10 3.199 3.199 3.199 94.33% Amr::timeStep() 10 3.186 3.187 3.188 94.00% Castro::advance() 10 3.17 3.17 3.171 93.49% Castro::subcycle_advance_ctu() 10 3.093 3.097 3.113 91.79% Castro::do_advance_ctu() 10 3.093 3.097 3.113 91.79% Castro::construct_ctu_hydro_source() 10 2.347 2.355 2.358 69.54% Gravity::make_radial_gravity() 21 0.3096 0.3176 0.3317 9.78% AmrLevel::FillPatch() 41 0.1967 0.2031 0.2153 6.35% Gravity::get_new_grav_vector() 11 0.2045 0.2058 0.2075 6.12% Castro::construct_old_gravity() 10 0.1888 0.1944 0.2068 6.10% Gravity::get_old_grav_vector() 10 0.1877 0.1936 0.2062 6.08% FillPatchIterator::Initialize 41 0.1609 0.1693 0.1906 5.62% Castro::construct_new_gravity() 10 0.1819 0.1834 0.1846 5.44% Amr::init() 1 0.179 0.1797 0.1801 5.31% Castro::initialize_do_advance() 10 0.1611 0.1684 0.1723 5.08% Amr::initialInit() 1 0.1641 0.165 0.1655 4.88% FillPatchIterator::FillFromLevel0() 41 0.1215 0.1278 0.1544 4.55% FillPatchSingleLevel 41 0.1214 0.1277 0.1543 4.55% check_for_negative_density() 10 0.0541 0.1196 0.1492 4.40% Amr::InitializeInit() 1 0.05865 0.0941 0.1381 4.07% Amr::defBaseLevel() 1 0.05865 0.0941 0.1381 4.07% Castro::clean_state() 62 0.1177 0.1208 0.1265 3.73% FabArray::ParallelCopy() 41 0.08627 0.09507 0.1249 3.68% Castro::expand_state() 10 0.1073 0.1134 0.1247 3.68% Castro::initData() 1 0.04121 0.0767 0.1199 3.53% Castro::estTimeStep() 21 0.03315 0.07207 0.1081 3.19% Amr::FinalizeInit() 1 0.02604 0.07092 0.1059 3.12% Castro::do_old_sources() 10 0.09412 0.09813 0.1035 3.05% amrex::Copy() 193 0.0666 0.08067 0.0901 2.66% FabArray::ParallelCopy_finish() 41 0.04472 0.05403 0.08909 2.63% Castro::computeInitialDt() 2 0.002127 0.04679 0.08178 2.41% Castro::initialize_advance() 10 0.05342 0.06978 0.07377 2.18% FabArray::setVal() 143 0.05501 0.06832 0.07376 2.17% Castro::computeTemp() 63 0.06554 0.06696 0.07078 2.09% Castro::do_new_sources() 10 0.05802 0.064 0.06883 2.03% Castro::reset_internal_energy(MultiFab) 63 0.0472 0.04842 0.05153 1.52% Castro::reset_internal_energy(Fab) 1008 0.04693 0.04812 0.05122 1.51% Castro::normalize_species() 62 0.04716 0.04865 0.05038 1.49% FabArray::ParallelCopy_nowait() 41 0.03571 0.04095 0.04552 1.34% StateDataPhysBCFunct::() 41 0.02931 0.03259 0.03631 1.07% StateData::FillBoundary(geom) 41 0.0292 0.03248 0.0362 1.07% Castro::construct_new_source() 50 0.02778 0.03033 0.03234 0.95% Gravity::interpolate_monopole_grav() 21 0.02652 0.0268 0.0271 0.80% Castro::construct_new_gravity_source() 10 0.02192 0.02405 0.02593 0.76% Castro::post_init() 1 0.02328 0.02348 0.02369 0.70% Castro::finalize_do_advance() 10 0.01163 0.01776 0.02295 0.68% Amr::writePlotFile() 2 0.02225 0.02237 0.02259 0.67% Castro::post_timestep() 10 0.0156 0.01649 0.01696 0.50% Castro::check_for_nan() 20 0.01019 0.01214 0.01513 0.45% MultiFab::contains_nan() 20 0.01017 0.01211 0.01509 0.44% Castro::apply_source_to_state() 20 0.01061 0.0122 0.01356 0.40% FabArray::Saxpy() 20 0.01056 0.01215 0.01351 0.40% VisMF::Write(FabArray) 2 0.009106 0.009646 0.01213 0.36% Castro::Castro() 1 0.01068 0.01103 0.01184 0.35% FabArray::setDomainBndry() 41 0.007524 0.00952 0.01066 0.31% Castro::construct_old_source() 50 0.006576 0.009303 0.01027 0.30% Castro::construct_old_gravity_source() 10 0.006518 0.009234 0.0102 0.30% Castro::computeNewDt() 9 0.008625 0.008633 0.008643 0.25% Castro::initMFs() 1 0.006463 0.006875 0.008617 0.25% Other 261 0.02579 0.02975 0.03375 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6746 KiB 6756 KiB 6762 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4554 KiB 4563 KiB 4588 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 219 KiB 226 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2799 KiB 2804 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 238 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized