Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:07 UTC on 2025-05-12. Successfully read inputs file ... Castro git describe: 25.05-1-g30dd8f7a2 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01493927 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.375185854 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.347811785 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.332789305 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.364417647 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.323585343 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.29792401 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299245353 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299764109 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301262839 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298101981 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007544955 seconds Ending run at 05:19:10 UTC on 2025-05-12. Run time = 3.43161267 Run time without initialization = 3.253076902 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4277 ... 3.4303 ... 3.4316 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1855 2.2806 2.3573 68.69% Gravity::make_radial_gravity() 21 0.2926 0.3037 0.3123 9.10% check_for_negative_density() 10 0.02856 0.1056 0.2039 5.94% Castro::initData() 1 0.03899 0.07465 0.1099 3.20% Castro::estTimeStep() 21 0.02604 0.06607 0.09716 2.83% FabArray::ParallelCopy_finish() 41 0.03691 0.04909 0.08147 2.37% amrex::Copy() 193 0.06408 0.07293 0.07888 2.30% FabArray::setVal() 143 0.0561 0.06732 0.07561 2.20% Castro::normalize_species() 62 0.04566 0.04675 0.04981 1.45% Castro::reset_internal_energy(Fab) 1008 0.04419 0.0466 0.04844 1.41% FabArray::ParallelCopy_nowait() 41 0.03493 0.03985 0.04189 1.22% FillPatchIterator::Initialize 41 0.03034 0.03336 0.03547 1.03% StateData::FillBoundary(geom) 41 0.02971 0.0325 0.03484 1.02% Gravity::interpolate_monopole_grav() 21 0.0264 0.02702 0.02806 0.82% Castro::construct_new_gravity_source() 10 0.02191 0.02427 0.02556 0.74% Castro::initialize_do_advance() 10 0.01323 0.01679 0.02022 0.59% Castro::computeTemp() 63 0.0179 0.01834 0.01881 0.55% VisMF::Write(FabArray) 2 0.009518 0.01027 0.01347 0.39% FabArray::Saxpy() 20 0.01089 0.01211 0.01274 0.37% Castro::initialize_advance() 10 0.005603 0.009999 0.0127 0.37% FabArray::setDomainBndry() 41 0.008751 0.01008 0.01152 0.34% MultiFab::contains_nan() 20 0.01026 0.01099 0.01151 0.34% Amr::writePlotFile() 2 0.007426 0.009551 0.01001 0.29% Castro::initMFs() 1 0.007788 0.008793 0.009996 0.29% Castro::construct_old_gravity_source() 10 0.006536 0.008733 0.00938 0.27% StateData::define() 4 0.005576 0.006177 0.007037 0.21% Castro::construct_new_source() 50 0.005344 0.00572 0.005904 0.17% Gravity::get_new_grav_vector() 11 0.003294 0.003957 0.005453 0.16% main() 1 0.003773 0.004371 0.004783 0.14% Amr::coarseTimeStep() 10 0.001538 0.00233 0.002749 0.08% Gravity::get_old_grav_vector() 10 0.001702 0.002023 0.002425 0.07% Castro::finalize_do_advance() 10 0.000599 0.001318 0.001699 0.05% AmrLevel::FillPatch() 41 0.000763 0.0009198 0.001155 0.03% Amr::timeStep() 10 0.0001246 0.0001838 0.0004048 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002829 0.0003002 0.0003381 0.01% Castro::clean_state() 62 0.000147 0.0001781 0.0002071 0.01% Castro::do_advance_ctu() 10 0.000145 0.0001713 0.0002035 0.01% Castro::apply_source_to_state() 20 4.3e-05 5.721e-05 0.0001366 0.00% Castro::do_old_sources() 10 6.926e-05 9.233e-05 0.0001215 0.00% FillPatchIterator::FillFromLevel0() 41 9.826e-05 0.000106 0.0001151 0.00% StateDataPhysBCFunct::() 41 9.649e-05 0.0001048 0.0001133 0.00% FabArray::ParallelCopy() 41 8.38e-05 9.271e-05 0.0001022 0.00% Castro::construct_old_source() 50 6.245e-05 6.941e-05 8.707e-05 0.00% Amr::FinalizeInit() 1 4.115e-06 1.458e-05 8.294e-05 0.00% FillPatchSingleLevel 41 6.042e-05 6.776e-05 8.257e-05 0.00% Castro::do_new_sources() 10 4.19e-05 5.774e-05 6.981e-05 0.00% Castro::Castro() 1 4.859e-05 5.495e-05 6.226e-05 0.00% Castro::construct_new_gravity() 10 2.701e-05 3.658e-05 5.99e-05 0.00% Castro::advance() 10 3.952e-05 4.658e-05 5.299e-05 0.00% Castro::subcycle_advance_ctu() 10 3.471e-05 4.355e-05 5.039e-05 0.00% Castro::construct_old_gravity() 10 3.45e-05 4.093e-05 4.908e-05 0.00% Amr::defBaseLevel() 1 3.845e-05 4.45e-05 4.906e-05 0.00% Castro::check_for_nan() 20 2.598e-05 2.764e-05 2.95e-05 0.00% Castro::post_timestep() 10 1.333e-05 1.728e-05 2.76e-05 0.00% Castro::expand_state() 10 2.22e-05 2.443e-05 2.615e-05 0.00% Castro::post_init() 1 1.558e-05 1.746e-05 2.089e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.054e-05 1.302e-05 2.031e-05 0.00% Castro::computeNewDt() 9 9.442e-06 1.072e-05 1.257e-05 0.00% Amr::init() 1 1.498e-06 2.453e-06 5.811e-06 0.00% Amr::InitializeInit() 1 2.752e-06 3.448e-06 5.799e-06 0.00% Castro::computeInitialDt() 2 3.453e-06 3.963e-06 4.849e-06 0.00% Amr::initialInit() 1 1.463e-06 1.894e-06 2.457e-06 0.00% Other 256 0.009641 0.01562 0.0179 0.52% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.428 3.43 3.432 100.00% Amr::coarseTimeStep() 10 3.241 3.241 3.241 94.44% Amr::timeStep() 10 3.228 3.229 3.229 94.11% Castro::advance() 10 3.211 3.212 3.213 93.62% Castro::subcycle_advance_ctu() 10 3.134 3.139 3.154 91.91% Castro::do_advance_ctu() 10 3.134 3.139 3.154 91.91% Castro::construct_ctu_hydro_source() 10 2.407 2.409 2.414 70.35% Gravity::make_radial_gravity() 21 0.3078 0.3188 0.3277 9.55% Gravity::get_new_grav_vector() 11 0.2155 0.2191 0.2218 6.46% AmrLevel::FillPatch() 41 0.1855 0.1948 0.2128 6.20% check_for_negative_density() 10 0.02856 0.1056 0.2039 5.94% Castro::construct_new_gravity() 10 0.1932 0.1963 0.199 5.80% Castro::construct_old_gravity() 10 0.1751 0.1809 0.1878 5.47% Gravity::get_old_grav_vector() 10 0.1744 0.1802 0.1872 5.46% FillPatchIterator::Initialize 41 0.158 0.1653 0.1857 5.41% Amr::init() 1 0.1741 0.1772 0.1782 5.19% Castro::initialize_do_advance() 10 0.1553 0.1636 0.173 5.04% Amr::initialInit() 1 0.1593 0.1624 0.1635 4.77% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1219 0.1466 4.27% FillPatchSingleLevel 41 0.1127 0.1218 0.1465 4.27% Amr::InitializeInit() 1 0.06389 0.0997 0.1361 3.97% Amr::defBaseLevel() 1 0.06389 0.09969 0.1361 3.97% Castro::expand_state() 10 0.1026 0.1103 0.1243 3.62% Castro::clean_state() 62 0.1145 0.1173 0.1214 3.54% FabArray::ParallelCopy() 41 0.07898 0.08912 0.1166 3.40% Castro::initData() 1 0.04246 0.07825 0.1136 3.31% Amr::FinalizeInit() 1 0.02646 0.06274 0.09875 2.88% Castro::estTimeStep() 21 0.02604 0.06607 0.09716 2.83% Castro::do_old_sources() 10 0.08783 0.09015 0.09201 2.68% FabArray::ParallelCopy_finish() 41 0.03691 0.04909 0.08147 2.37% amrex::Copy() 193 0.06408 0.07293 0.07888 2.30% FabArray::setVal() 143 0.0561 0.06732 0.07561 2.20% Castro::initialize_advance() 10 0.05418 0.06943 0.07539 2.20% Castro::computeInitialDt() 2 0.002126 0.0384 0.07434 2.17% Castro::do_new_sources() 10 0.06096 0.06497 0.07222 2.10% Castro::computeTemp() 63 0.06238 0.06523 0.06733 1.96% Castro::normalize_species() 62 0.04566 0.04675 0.04981 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04447 0.0469 0.04874 1.42% Castro::reset_internal_energy(Fab) 1008 0.04419 0.0466 0.04844 1.41% FabArray::ParallelCopy_nowait() 41 0.03502 0.03993 0.04198 1.22% StateDataPhysBCFunct::() 41 0.02983 0.0326 0.03494 1.02% StateData::FillBoundary(geom) 41 0.02971 0.0325 0.03484 1.02% Castro::construct_new_source() 50 0.02725 0.02999 0.03124 0.91% Gravity::interpolate_monopole_grav() 21 0.0264 0.02702 0.02806 0.82% Castro::construct_new_gravity_source() 10 0.02191 0.02427 0.02556 0.74% Castro::finalize_do_advance() 10 0.01139 0.02017 0.02408 0.70% Castro::post_init() 1 0.0234 0.02378 0.0239 0.70% Amr::writePlotFile() 2 0.02228 0.02239 0.02273 0.66% Castro::post_timestep() 10 0.0156 0.01602 0.01667 0.49% VisMF::Write(FabArray) 2 0.009518 0.01027 0.01347 0.39% Castro::Castro() 1 0.01071 0.01202 0.01334 0.39% Castro::apply_source_to_state() 20 0.01093 0.01216 0.01278 0.37% FabArray::Saxpy() 20 0.01089 0.01211 0.01274 0.37% Castro::check_for_nan() 20 0.01029 0.01102 0.01154 0.34% FabArray::setDomainBndry() 41 0.008751 0.01008 0.01152 0.34% MultiFab::contains_nan() 20 0.01026 0.01099 0.01151 0.34% Castro::initMFs() 1 0.007788 0.008793 0.009996 0.29% Castro::construct_old_source() 50 0.0066 0.008802 0.009467 0.28% Castro::construct_old_gravity_source() 10 0.006536 0.008733 0.00938 0.27% Castro::computeNewDt() 9 0.008809 0.008841 0.00886 0.26% AmrLevel::AmrLevel(dm) 1 0.005587 0.00619 0.007057 0.21% StateData::define() 4 0.005576 0.006177 0.007037 0.21% Other 256 0.01448 0.02386 0.02742 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8650 KiB 8660 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6763 KiB 6766 KiB 6773 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7126 KiB 7134 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4563 KiB 4571 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 215 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2804 KiB 2808 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 237 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 67 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized