Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:21:20 UTC on 2025-05-13. Successfully read inputs file ... Castro git describe: 25.05-1-g30dd8f7a2 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014922098 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.351072508 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.357179652 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.369689108 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.386958854 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370240394 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.368217521 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.372689156 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.374324225 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.371126058 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.371438213 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012702149 seconds Ending run at 05:21:24 UTC on 2025-05-13. Run time = 3.883577982 Run time without initialization = 3.713126286 Average number of zones advanced per microsecond: 0.706 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.8820 ... 3.8828 ... 3.8836 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2644 2.4606 2.6181 67.41% check_for_negative_density() 10 0.04548 0.2056 0.406 10.45% Gravity::make_radial_gravity() 21 0.291 0.3056 0.3217 8.28% amrex::Copy() 193 0.09782 0.1103 0.1212 3.12% Castro::initData() 1 0.03761 0.07415 0.1024 2.64% FabArray::setVal() 143 0.09338 0.09643 0.1011 2.60% Castro::estTimeStep() 21 0.02357 0.05779 0.1008 2.59% FabArray::ParallelCopy_nowait() 41 0.0587 0.0621 0.06516 1.68% FabArray::ParallelCopy_finish() 41 0.04974 0.05609 0.06294 1.62% FillPatchIterator::Initialize 41 0.04535 0.05151 0.05793 1.49% Castro::reset_internal_energy(Fab) 1008 0.04382 0.04953 0.05383 1.39% Castro::normalize_species() 62 0.04565 0.04906 0.05224 1.35% StateData::FillBoundary(geom) 41 0.03498 0.03796 0.04111 1.06% Castro::construct_new_gravity_source() 10 0.02942 0.03216 0.03498 0.90% Castro::initialize_do_advance() 10 0.02305 0.02629 0.03035 0.78% Gravity::interpolate_monopole_grav() 21 0.02641 0.02685 0.02742 0.71% Castro::computeTemp() 63 0.01763 0.01972 0.02078 0.53% FabArray::Saxpy() 20 0.01572 0.01781 0.01947 0.50% FabArray::setDomainBndry() 41 0.01752 0.01774 0.01806 0.46% MultiFab::contains_nan() 20 0.01286 0.01465 0.0164 0.42% Castro::initialize_advance() 10 0.01425 0.01511 0.01601 0.41% Castro::construct_old_gravity_source() 10 0.01425 0.0151 0.01584 0.41% VisMF::Write(FabArray) 2 0.01007 0.01151 0.0143 0.37% Amr::writePlotFile() 2 0.008962 0.01179 0.01339 0.34% Castro::construct_new_source() 50 0.007274 0.007982 0.008727 0.22% Castro::initMFs() 1 0.006609 0.007102 0.008021 0.21% main() 1 0.00643 0.006832 0.007047 0.18% Gravity::get_new_grav_vector() 11 0.003861 0.00513 0.006057 0.16% Amr::coarseTimeStep() 10 0.0008537 0.002274 0.003805 0.10% Gravity::get_old_grav_vector() 10 0.002909 0.003157 0.003594 0.09% Castro::finalize_do_advance() 10 0.001258 0.001289 0.001318 0.03% AmrLevel::FillPatch() 41 0.0008662 0.0009813 0.001074 0.03% Amr::timeStep() 10 0.0001367 0.0002114 0.0004841 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003014 0.0003247 0.0003826 0.01% Castro::do_advance_ctu() 10 0.0001783 0.0002122 0.0002361 0.01% Castro::clean_state() 62 0.0001846 0.0002102 0.0002321 0.01% FillPatchIterator::FillFromLevel0() 41 0.000129 0.0001414 0.0001555 0.00% Castro::do_old_sources() 10 0.0001077 0.0001282 0.0001429 0.00% FabArray::ParallelCopy() 41 0.000107 0.0001235 0.0001399 0.00% StateDataPhysBCFunct::() 41 0.0001234 0.0001278 0.0001329 0.00% Castro::construct_old_source() 50 8.782e-05 0.0001001 0.0001179 0.00% FillPatchSingleLevel 41 8.046e-05 8.875e-05 0.0001017 0.00% Castro::do_new_sources() 10 6.226e-05 7.63e-05 9.207e-05 0.00% Amr::FinalizeInit() 1 3.303e-06 1.541e-05 9.169e-05 0.00% Castro::Castro() 1 5.045e-05 6.558e-05 8.088e-05 0.00% Castro::advance() 10 5.265e-05 6.453e-05 7.932e-05 0.00% Castro::apply_source_to_state() 20 4.722e-05 6.44e-05 7.583e-05 0.00% Castro::subcycle_advance_ctu() 10 5.158e-05 6.051e-05 6.71e-05 0.00% Amr::defBaseLevel() 1 3.521e-05 4.335e-05 6.513e-05 0.00% Castro::construct_old_gravity() 10 3.978e-05 4.82e-05 6.165e-05 0.00% Castro::expand_state() 10 3.156e-05 4.417e-05 5.382e-05 0.00% Castro::construct_new_gravity() 10 3.275e-05 4.004e-05 5.309e-05 0.00% Castro::check_for_nan() 20 3.021e-05 3.447e-05 3.843e-05 0.00% Castro::post_init() 1 1.37e-05 1.84e-05 3.176e-05 0.00% Castro::post_timestep() 10 1.575e-05 1.934e-05 2.386e-05 0.00% Castro::computeNewDt() 9 8.946e-06 1.025e-05 1.236e-05 0.00% Amr::InitializeInit() 1 2.462e-06 3.313e-06 5.155e-06 0.00% Amr::init() 1 1.802e-06 2.622e-06 4.606e-06 0.00% Castro::computeInitialDt() 2 3.071e-06 3.636e-06 4.067e-06 0.00% Amr::initialInit() 1 1.493e-06 1.8e-06 1.966e-06 0.00% Other 261 0.01692 0.02026 0.02422 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.882 3.883 3.884 100.00% Amr::coarseTimeStep() 10 3.693 3.693 3.693 95.10% Amr::timeStep() 10 3.68 3.681 3.683 94.82% Castro::advance() 10 3.664 3.665 3.665 94.38% Castro::subcycle_advance_ctu() 10 3.56 3.564 3.569 91.90% Castro::do_advance_ctu() 10 3.56 3.564 3.569 91.90% Castro::construct_ctu_hydro_source() 10 2.686 2.689 2.693 69.35% check_for_negative_density() 10 0.04548 0.2056 0.406 10.45% Gravity::make_radial_gravity() 21 0.3139 0.3275 0.3435 8.85% AmrLevel::FillPatch() 41 0.2517 0.2728 0.2956 7.61% FillPatchIterator::Initialize 41 0.2141 0.226 0.2433 6.27% Castro::initialize_do_advance() 10 0.2093 0.2225 0.2363 6.09% Gravity::get_new_grav_vector() 11 0.2254 0.2271 0.2289 5.89% Castro::construct_old_gravity() 10 0.1899 0.1998 0.2127 5.48% Gravity::get_old_grav_vector() 10 0.189 0.1988 0.2119 5.46% Castro::construct_new_gravity() 10 0.1997 0.2013 0.2033 5.24% Castro::expand_state() 10 0.1343 0.1524 0.1705 4.39% Amr::init() 1 0.1691 0.1695 0.1701 4.38% FillPatchIterator::FillFromLevel0() 41 0.1504 0.1567 0.1688 4.35% FillPatchSingleLevel 41 0.1502 0.1566 0.1687 4.34% Amr::initialInit() 1 0.1539 0.1544 0.155 3.99% Castro::do_old_sources() 10 0.131 0.1326 0.1348 3.47% Castro::clean_state() 62 0.1161 0.1251 0.1323 3.41% FabArray::ParallelCopy() 41 0.112 0.1184 0.1283 3.30% Amr::InitializeInit() 1 0.05826 0.09549 0.1242 3.20% Amr::defBaseLevel() 1 0.05825 0.09549 0.1242 3.20% amrex::Copy() 193 0.09782 0.1103 0.1212 3.12% Castro::initData() 1 0.04141 0.07812 0.1064 2.74% FabArray::setVal() 143 0.09338 0.09643 0.1011 2.60% Castro::estTimeStep() 21 0.02357 0.05779 0.1008 2.59% Castro::initialize_advance() 10 0.09093 0.09598 0.1001 2.58% Amr::FinalizeInit() 1 0.02982 0.05887 0.09671 2.49% Castro::do_new_sources() 10 0.07464 0.07915 0.08453 2.18% Castro::computeTemp() 63 0.06176 0.06958 0.07488 1.93% Castro::computeInitialDt() 2 0.002201 0.03131 0.06909 1.78% FabArray::ParallelCopy_nowait() 41 0.05882 0.06222 0.06527 1.68% FabArray::ParallelCopy_finish() 41 0.04974 0.05609 0.06294 1.62% Castro::reset_internal_energy(MultiFab) 63 0.04412 0.04985 0.05418 1.40% Castro::reset_internal_energy(Fab) 1008 0.04382 0.04953 0.05383 1.39% Castro::normalize_species() 62 0.04565 0.04906 0.05224 1.35% Castro::construct_new_source() 50 0.0367 0.04014 0.0435 1.12% StateDataPhysBCFunct::() 41 0.03511 0.03808 0.04124 1.06% StateData::FillBoundary(geom) 41 0.03498 0.03796 0.04111 1.06% Castro::construct_new_gravity_source() 10 0.02942 0.03216 0.03498 0.90% Amr::writePlotFile() 2 0.02786 0.02794 0.02807 0.72% Gravity::interpolate_monopole_grav() 21 0.02641 0.02685 0.02742 0.71% Castro::post_init() 1 0.02675 0.02693 0.02718 0.70% Castro::finalize_do_advance() 10 0.01294 0.01888 0.02457 0.63% Castro::apply_source_to_state() 20 0.01576 0.01787 0.01955 0.50% FabArray::Saxpy() 20 0.01572 0.01781 0.01947 0.50% FabArray::setDomainBndry() 41 0.01752 0.01774 0.01806 0.46% Castro::post_timestep() 10 0.01465 0.01625 0.01784 0.46% Castro::check_for_nan() 20 0.01289 0.01468 0.01643 0.42% MultiFab::contains_nan() 20 0.01286 0.01465 0.0164 0.42% Castro::construct_old_source() 50 0.01434 0.0152 0.01593 0.41% Castro::construct_old_gravity_source() 10 0.01425 0.0151 0.01584 0.41% VisMF::Write(FabArray) 2 0.01007 0.01151 0.0143 0.37% Castro::Castro() 1 0.01017 0.01101 0.01198 0.31% Castro::computeNewDt() 9 0.008887 0.008899 0.008908 0.23% Castro::initMFs() 1 0.006609 0.007102 0.008021 0.21% Other 261 0.02783 0.03302 0.03864 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 29 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6816 KiB 6822 KiB 6824 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4581 KiB 4585 KiB 4593 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 241 KiB 267 KiB 293 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 19 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2828 KiB 2831 KiB 2832 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 206 KiB 214 KiB 225 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 46 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 65 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized