Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:47 UTC on 2025-05-14. Successfully read inputs file ... Castro git describe: 25.05-1-g30dd8f7a2 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014584097 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349702427 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.361869854 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.359197735 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.377587257 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359206881 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.368466139 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.377437656 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.377304526 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.375895569 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.381950132 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012765536 seconds Ending run at 05:20:51 UTC on 2025-05-14. Run time = 3.878217775 Run time without initialization = 3.708876525 Average number of zones advanced per microsecond: 0.707 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.8729 ... 3.8763 ... 3.8783 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3014 2.4473 2.6015 67.08% check_for_negative_density() 10 0.04294 0.2016 0.3514 9.06% Gravity::make_radial_gravity() 21 0.2989 0.312 0.3261 8.41% amrex::Copy() 193 0.1052 0.1122 0.1183 3.05% Castro::initData() 1 0.03864 0.07374 0.1015 2.62% FabArray::setVal() 143 0.09003 0.09335 0.09793 2.53% Castro::estTimeStep() 21 0.02867 0.05767 0.09792 2.52% FabArray::ParallelCopy_finish() 41 0.04877 0.05391 0.06666 1.72% Castro::normalize_species() 62 0.04796 0.05674 0.06533 1.68% FabArray::ParallelCopy_nowait() 41 0.0566 0.05999 0.06311 1.63% FillPatchIterator::Initialize 41 0.04495 0.05092 0.05699 1.47% Castro::reset_internal_energy(Fab) 1008 0.04744 0.04969 0.05318 1.37% StateData::FillBoundary(geom) 41 0.03498 0.03819 0.04233 1.09% Castro::construct_new_gravity_source() 10 0.03007 0.03216 0.03522 0.91% Castro::initialize_do_advance() 10 0.0216 0.02493 0.02788 0.72% Gravity::interpolate_monopole_grav() 21 0.02646 0.02703 0.02748 0.71% Castro::computeTemp() 63 0.01919 0.02015 0.02151 0.55% FabArray::Saxpy() 20 0.0158 0.01793 0.01933 0.50% FabArray::setDomainBndry() 41 0.01533 0.01659 0.01804 0.47% Castro::construct_old_gravity_source() 10 0.01371 0.01546 0.01674 0.43% Castro::initialize_advance() 10 0.01423 0.01535 0.01615 0.42% MultiFab::contains_nan() 20 0.0123 0.01431 0.01596 0.41% VisMF::Write(FabArray) 2 0.009891 0.01143 0.0142 0.37% Amr::writePlotFile() 2 0.008814 0.01149 0.01316 0.34% Castro::initMFs() 1 0.006395 0.007656 0.01009 0.26% Castro::construct_new_source() 50 0.007708 0.008173 0.008649 0.22% StateData::define() 4 0.005302 0.006309 0.008121 0.21% main() 1 0.006096 0.006832 0.007062 0.18% Amr::coarseTimeStep() 10 0.001799 0.004061 0.006232 0.16% Gravity::get_new_grav_vector() 11 0.003456 0.004784 0.005499 0.14% Gravity::get_old_grav_vector() 10 0.002542 0.003087 0.003544 0.09% Castro::finalize_do_advance() 10 0.001272 0.00133 0.001378 0.04% AmrLevel::FillPatch() 41 0.000995 0.001073 0.001158 0.03% Amr::timeStep() 10 0.000128 0.0002386 0.0005524 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003005 0.0003235 0.0003455 0.01% Castro::do_advance_ctu() 10 0.0001813 0.0002192 0.0002641 0.01% Castro::clean_state() 62 0.0001761 0.0002094 0.000245 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001242 0.0001417 0.0001587 0.00% Castro::do_old_sources() 10 9.484e-05 0.00013 0.0001575 0.00% StateDataPhysBCFunct::() 41 0.0001199 0.0001315 0.000143 0.00% FabArray::ParallelCopy() 41 0.0001102 0.0001229 0.0001402 0.00% Castro::construct_old_source() 50 7.365e-05 0.0001015 0.0001309 0.00% Amr::FinalizeInit() 1 3.544e-06 1.705e-05 0.0001044 0.00% FillPatchSingleLevel 41 7.902e-05 8.864e-05 0.0001029 0.00% Castro::advance() 10 4.915e-05 6.863e-05 0.0001024 0.00% Castro::subcycle_advance_ctu() 10 5.489e-05 6.827e-05 8.937e-05 0.00% Castro::do_new_sources() 10 5.965e-05 7.538e-05 8.517e-05 0.00% Castro::apply_source_to_state() 20 5.708e-05 6.422e-05 7.69e-05 0.00% Castro::Castro() 1 4.639e-05 5.937e-05 7.012e-05 0.00% Castro::construct_old_gravity() 10 4.087e-05 4.811e-05 5.569e-05 0.00% Castro::construct_new_gravity() 10 3.443e-05 4.407e-05 5.456e-05 0.00% Castro::expand_state() 10 3.268e-05 4.199e-05 5.228e-05 0.00% Amr::defBaseLevel() 1 3.745e-05 4.276e-05 5.007e-05 0.00% Castro::check_for_nan() 20 2.829e-05 3.327e-05 3.965e-05 0.00% Castro::post_timestep() 10 1.671e-05 2.144e-05 2.748e-05 0.00% Castro::post_init() 1 1.516e-05 1.885e-05 2.519e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.664e-06 1.412e-05 2.16e-05 0.00% Castro::computeInitialDt() 2 3.017e-06 5.809e-06 1.939e-05 0.00% Castro::computeNewDt() 9 9.217e-06 1.088e-05 1.352e-05 0.00% Amr::InitializeInit() 1 2.601e-06 3.669e-06 5.736e-06 0.00% Amr::init() 1 1.872e-06 2.433e-06 3.618e-06 0.00% Amr::initialInit() 1 1.68e-06 2.417e-06 3.425e-06 0.00% Other 256 0.01145 0.01643 0.0199 0.51% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.873 3.876 3.878 100.00% Amr::coarseTimeStep() 10 3.689 3.689 3.689 95.12% Amr::timeStep() 10 3.672 3.674 3.677 94.80% Castro::advance() 10 3.656 3.656 3.657 94.28% Castro::subcycle_advance_ctu() 10 3.547 3.556 3.562 91.85% Castro::do_advance_ctu() 10 3.547 3.555 3.562 91.85% Castro::construct_ctu_hydro_source() 10 2.671 2.674 2.678 69.04% check_for_negative_density() 10 0.04294 0.2016 0.3514 9.06% Gravity::make_radial_gravity() 21 0.3208 0.3345 0.3484 8.98% AmrLevel::FillPatch() 41 0.2494 0.2676 0.2863 7.38% Gravity::get_new_grav_vector() 11 0.2294 0.2332 0.2365 6.10% FillPatchIterator::Initialize 41 0.2069 0.2202 0.2351 6.06% Castro::initialize_do_advance() 10 0.2047 0.2182 0.2323 5.99% Castro::construct_new_gravity() 10 0.2067 0.2102 0.2129 5.49% Castro::construct_old_gravity() 10 0.1902 0.1993 0.2103 5.42% Gravity::get_old_grav_vector() 10 0.189 0.1983 0.2094 5.40% Amr::init() 1 0.1644 0.1672 0.1691 4.36% Castro::expand_state() 10 0.1337 0.15 0.1669 4.30% FillPatchIterator::FillFromLevel0() 41 0.1431 0.1527 0.1634 4.21% FillPatchSingleLevel 41 0.1429 0.1526 0.1633 4.21% Amr::initialInit() 1 0.1496 0.1525 0.1544 3.98% Castro::clean_state() 62 0.1216 0.1332 0.1424 3.67% Castro::do_old_sources() 10 0.1296 0.1326 0.1349 3.48% FabArray::ParallelCopy() 41 0.1076 0.1141 0.1272 3.28% Amr::InitializeInit() 1 0.06218 0.09785 0.1255 3.24% Amr::defBaseLevel() 1 0.06218 0.09785 0.1255 3.24% amrex::Copy() 193 0.1052 0.1122 0.1183 3.05% Castro::initData() 1 0.04228 0.07752 0.105 2.71% Castro::initialize_advance() 10 0.08896 0.09564 0.1044 2.69% FabArray::setVal() 143 0.09003 0.09335 0.09793 2.53% Castro::estTimeStep() 21 0.02867 0.05767 0.09792 2.52% Amr::FinalizeInit() 1 0.02702 0.0546 0.09198 2.37% Castro::do_new_sources() 10 0.07685 0.08081 0.08519 2.20% Castro::computeTemp() 63 0.06736 0.07017 0.07414 1.91% Castro::computeInitialDt() 2 0.002177 0.02981 0.06721 1.73% FabArray::ParallelCopy_finish() 41 0.04877 0.05391 0.06666 1.72% Castro::normalize_species() 62 0.04796 0.05674 0.06533 1.68% FabArray::ParallelCopy_nowait() 41 0.05672 0.0601 0.06322 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04774 0.05001 0.0535 1.38% Castro::reset_internal_energy(Fab) 1008 0.04744 0.04969 0.05318 1.37% Castro::construct_new_source() 50 0.03778 0.04034 0.04341 1.12% StateDataPhysBCFunct::() 41 0.03511 0.03832 0.04245 1.09% StateData::FillBoundary(geom) 41 0.03498 0.03819 0.04233 1.09% Castro::construct_new_gravity_source() 10 0.03007 0.03216 0.03522 0.91% Amr::writePlotFile() 2 0.02748 0.02756 0.02766 0.71% Gravity::interpolate_monopole_grav() 21 0.02646 0.02703 0.02748 0.71% Castro::post_init() 1 0.0239 0.02413 0.02432 0.63% Castro::finalize_do_advance() 10 0.0141 0.01968 0.02393 0.62% Castro::post_timestep() 10 0.01621 0.01797 0.02052 0.53% Castro::apply_source_to_state() 20 0.01586 0.01799 0.01939 0.50% FabArray::Saxpy() 20 0.0158 0.01793 0.01933 0.50% FabArray::setDomainBndry() 41 0.01533 0.01659 0.01804 0.47% Castro::construct_old_source() 50 0.01379 0.01556 0.01685 0.43% Castro::construct_old_gravity_source() 10 0.01371 0.01546 0.01674 0.43% Castro::check_for_nan() 20 0.01233 0.01434 0.016 0.41% MultiFab::contains_nan() 20 0.0123 0.01431 0.01596 0.41% VisMF::Write(FabArray) 2 0.009891 0.01143 0.0142 0.37% Castro::Castro() 1 0.009848 0.0112 0.0141 0.36% Castro::initMFs() 1 0.006395 0.007656 0.01009 0.26% Castro::computeNewDt() 9 0.009516 0.009527 0.00954 0.25% AmrLevel::AmrLevel(dm) 1 0.005311 0.006324 0.008142 0.21% StateData::define() 4 0.005302 0.006309 0.008121 0.21% Other 256 0.01761 0.02589 0.0319 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8663 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6817 KiB 6826 KiB 6832 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7126 KiB 7136 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4570 KiB 4582 KiB 4590 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 240 KiB 262 KiB 285 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2825 KiB 2829 KiB 2832 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 210 KiB 219 KiB 229 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 45 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 65 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized