Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:48 UTC on 2025-05-15. Successfully read inputs file ... Castro git describe: 25.05-1-g30dd8f7a2 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.021499801 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.427551147 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.39010745 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.394177936 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.396697714 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.376400556 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.372722574 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.380323103 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.379832157 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.379291109 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.373643489 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012551043 seconds Ending run at 05:19:52 UTC on 2025-05-15. Run time = 4.088389758 Run time without initialization = 3.891331866 Average number of zones advanced per microsecond: 0.674 Average number of zones advanced per microsecond per rank: 0.084 TinyProfiler total time across processes [min...avg...max]: 4.0848 ... 4.0859 ... 4.0884 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2791 2.5076 2.6946 65.91% check_for_negative_density() 10 0.0812 0.2717 0.506 12.38% Gravity::make_radial_gravity() 21 0.313 0.326 0.3405 8.33% amrex::Copy() 193 0.1015 0.1176 0.1324 3.24% FabArray::setVal() 143 0.0933 0.1019 0.1074 2.63% Castro::initData() 1 0.03793 0.07182 0.1061 2.60% Castro::estTimeStep() 21 0.03485 0.06852 0.1043 2.55% FabArray::ParallelCopy_finish() 41 0.05858 0.07074 0.09017 2.21% FabArray::ParallelCopy_nowait() 41 0.05742 0.06232 0.06779 1.66% FillPatchIterator::Initialize 41 0.04599 0.05381 0.06022 1.47% Castro::reset_internal_energy(Fab) 1008 0.05097 0.05367 0.05599 1.37% Castro::normalize_species() 62 0.04733 0.05144 0.05424 1.33% StateData::FillBoundary(geom) 41 0.03587 0.04047 0.04774 1.17% Castro::construct_new_gravity_source() 10 0.0307 0.03287 0.03539 0.87% Castro::initialize_do_advance() 10 0.02424 0.02842 0.0317 0.78% Gravity::interpolate_monopole_grav() 21 0.02671 0.02729 0.02765 0.68% Amr::writePlotFile() 2 0.01215 0.01775 0.02217 0.54% Castro::computeTemp() 63 0.01947 0.02076 0.02181 0.53% FabArray::Saxpy() 20 0.01692 0.01828 0.01951 0.48% FabArray::setDomainBndry() 41 0.01518 0.01778 0.01892 0.46% Castro::initialize_advance() 10 0.0164 0.01723 0.01784 0.44% VisMF::Write(FabArray) 2 0.009941 0.01265 0.01754 0.43% MultiFab::contains_nan() 20 0.01254 0.01475 0.01656 0.40% Castro::construct_old_gravity_source() 10 0.0139 0.01498 0.01568 0.38% Castro::initMFs() 1 0.006181 0.008991 0.012 0.29% Castro::construct_new_source() 50 0.007497 0.008046 0.008866 0.22% StateData::define() 4 0.005006 0.007405 0.008592 0.21% main() 1 0.00692 0.007257 0.007474 0.18% Gravity::get_new_grav_vector() 11 0.004395 0.005366 0.006327 0.15% Amr::coarseTimeStep() 10 0.001085 0.003229 0.004196 0.10% Gravity::get_old_grav_vector() 10 0.002802 0.003254 0.00379 0.09% Castro::finalize_do_advance() 10 0.001256 0.001308 0.001357 0.03% AmrLevel::FillPatch() 41 0.0009411 0.001021 0.001107 0.03% Amr::timeStep() 10 0.0001366 0.000232 0.0004936 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003276 0.0003491 0.0003627 0.01% Castro::do_advance_ctu() 10 0.0002084 0.0002278 0.0002574 0.01% Castro::clean_state() 62 0.0001916 0.0002145 0.0002332 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001326 0.0001559 0.0001748 0.00% StateDataPhysBCFunct::() 41 0.0001162 0.0001372 0.000157 0.00% Castro::do_old_sources() 10 0.0001044 0.0001256 0.0001526 0.00% Castro::Castro() 1 4.664e-05 9.733e-05 0.0001524 0.00% FabArray::ParallelCopy() 41 0.0001096 0.000119 0.0001345 0.00% Castro::construct_old_source() 50 7.856e-05 9.597e-05 0.0001193 0.00% Castro::do_new_sources() 10 6.269e-05 7.702e-05 0.0001024 0.00% FillPatchSingleLevel 41 7.302e-05 8.875e-05 0.0001009 0.00% Castro::subcycle_advance_ctu() 10 5.226e-05 7.558e-05 9.986e-05 0.00% Castro::apply_source_to_state() 20 5.752e-05 6.782e-05 8.38e-05 0.00% Amr::FinalizeInit() 1 4.122e-06 1.491e-05 7.896e-05 0.00% Castro::advance() 10 5.322e-05 6.408e-05 7.726e-05 0.00% Amr::defBaseLevel() 1 3.796e-05 5.075e-05 6.604e-05 0.00% Castro::construct_old_gravity() 10 3.981e-05 4.999e-05 6.577e-05 0.00% Castro::expand_state() 10 3.803e-05 4.674e-05 6.202e-05 0.00% Castro::construct_new_gravity() 10 3.28e-05 3.913e-05 5.272e-05 0.00% Castro::check_for_nan() 20 2.621e-05 3.346e-05 3.763e-05 0.00% Castro::post_timestep() 10 1.628e-05 2.077e-05 2.829e-05 0.00% Castro::post_init() 1 1.46e-05 1.673e-05 1.953e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.65e-06 1.291e-05 1.652e-05 0.00% Castro::computeNewDt() 9 9.346e-06 1.047e-05 1.135e-05 0.00% Amr::initialInit() 1 1.117e-06 2.743e-06 8.884e-06 0.00% Castro::computeInitialDt() 2 3.654e-06 4.461e-06 5.664e-06 0.00% Amr::InitializeInit() 1 2.483e-06 3.522e-06 5.567e-06 0.00% Amr::init() 1 1.809e-06 2.256e-06 2.915e-06 0.00% Other 256 0.01318 0.01717 0.02152 0.53% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.085 4.086 4.088 100.00% Amr::coarseTimeStep() 10 3.871 3.871 3.871 94.69% Amr::timeStep() 10 3.857 3.858 3.86 94.42% Castro::advance() 10 3.84 3.841 3.841 93.96% Castro::subcycle_advance_ctu() 10 3.729 3.732 3.74 91.48% Castro::do_advance_ctu() 10 3.729 3.732 3.74 91.48% Castro::construct_ctu_hydro_source() 10 2.798 2.803 2.81 68.72% check_for_negative_density() 10 0.0812 0.2717 0.506 12.38% Gravity::make_radial_gravity() 21 0.3369 0.35 0.3643 8.91% AmrLevel::FillPatch() 41 0.2804 0.2952 0.3123 7.64% FillPatchIterator::Initialize 41 0.2379 0.2458 0.265 6.48% Castro::initialize_do_advance() 10 0.2219 0.2359 0.248 6.07% Gravity::get_new_grav_vector() 11 0.2362 0.2403 0.2433 5.95% Castro::construct_old_gravity() 10 0.208 0.2159 0.2258 5.52% Gravity::get_old_grav_vector() 10 0.2066 0.2149 0.2249 5.50% Castro::construct_new_gravity() 10 0.2058 0.2096 0.2121 5.19% Amr::init() 1 0.1928 0.1944 0.1971 4.82% FillPatchIterator::FillFromLevel0() 41 0.166 0.1742 0.1965 4.81% FillPatchSingleLevel 41 0.1659 0.174 0.1963 4.80% Castro::expand_state() 10 0.1475 0.1623 0.1752 4.29% Amr::initialInit() 1 0.1712 0.172 0.1745 4.27% FabArray::ParallelCopy() 41 0.1232 0.1333 0.1483 3.63% Castro::do_old_sources() 10 0.1423 0.1438 0.1467 3.59% Castro::clean_state() 62 0.1274 0.1329 0.1376 3.37% Amr::InitializeInit() 1 0.06702 0.09986 0.1359 3.32% Amr::defBaseLevel() 1 0.06701 0.09985 0.1359 3.32% amrex::Copy() 193 0.1015 0.1176 0.1324 3.24% Castro::initData() 1 0.04289 0.07646 0.1106 2.70% FabArray::setVal() 143 0.0933 0.1019 0.1074 2.63% Castro::initialize_advance() 10 0.09549 0.1035 0.1071 2.62% Amr::FinalizeInit() 1 0.03561 0.07214 0.1047 2.56% Castro::estTimeStep() 21 0.03485 0.06852 0.1043 2.55% FabArray::ParallelCopy_finish() 41 0.05858 0.07074 0.09017 2.21% Castro::do_new_sources() 10 0.07624 0.08027 0.08399 2.05% Castro::computeTemp() 63 0.0721 0.07478 0.07816 1.91% Castro::computeInitialDt() 2 0.002832 0.03961 0.07256 1.77% FabArray::ParallelCopy_nowait() 41 0.05754 0.06246 0.06791 1.66% Castro::reset_internal_energy(MultiFab) 63 0.05131 0.05402 0.05635 1.38% Castro::reset_internal_energy(Fab) 1008 0.05097 0.05367 0.05599 1.37% Castro::normalize_species() 62 0.04733 0.05144 0.05424 1.33% StateDataPhysBCFunct::() 41 0.03599 0.04061 0.0479 1.17% StateData::FillBoundary(geom) 41 0.03587 0.04047 0.04774 1.17% Castro::construct_new_source() 50 0.03826 0.04091 0.04386 1.07% Amr::writePlotFile() 2 0.0343 0.03504 0.03563 0.87% Castro::construct_new_gravity_source() 10 0.0307 0.03287 0.03539 0.87% Castro::post_init() 1 0.03106 0.03181 0.0325 0.79% Gravity::interpolate_monopole_grav() 21 0.02671 0.02729 0.02765 0.68% Castro::finalize_do_advance() 10 0.01682 0.0214 0.0271 0.66% Castro::apply_source_to_state() 20 0.01698 0.01835 0.01958 0.48% FabArray::Saxpy() 20 0.01692 0.01828 0.01951 0.48% FabArray::setDomainBndry() 41 0.01518 0.01778 0.01892 0.46% Castro::post_timestep() 10 0.01614 0.01715 0.01854 0.45% VisMF::Write(FabArray) 2 0.009941 0.01265 0.01754 0.43% Castro::check_for_nan() 20 0.01257 0.01478 0.01659 0.41% MultiFab::contains_nan() 20 0.01254 0.01475 0.01656 0.40% Castro::Castro() 1 0.008817 0.01432 0.0164 0.40% Castro::construct_old_source() 50 0.01398 0.01507 0.01576 0.39% Castro::construct_old_gravity_source() 10 0.0139 0.01498 0.01568 0.38% Castro::initMFs() 1 0.006181 0.008991 0.012 0.29% Castro::computeNewDt() 9 0.008811 0.008828 0.008847 0.22% AmrLevel::AmrLevel(dm) 1 0.005023 0.007418 0.008603 0.21% StateData::define() 4 0.005006 0.007405 0.008592 0.21% Other 256 0.0189 0.02569 0.03365 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 45 B 65 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8663 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6788 KiB 6791 KiB 6793 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4560 KiB 4563 KiB 4571 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 255 KiB 273 KiB 291 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 20 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 210 KiB 218 KiB 227 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 49 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 67 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized