Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:38 UTC on 2025-05-16. Successfully read inputs file ... Castro git describe: 25.05-1-g30dd8f7a2 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016237332 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349217073 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.373399561 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.372748553 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.397445236 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.373816451 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.371618253 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.374497929 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.371555873 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.37618411 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.378103833 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.013029084 seconds Ending run at 05:20:42 UTC on 2025-05-16. Run time = 3.927578696 Run time without initialization = 3.759189007 Average number of zones advanced per microsecond: 0.697 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9259 ... 3.9267 ... 3.9276 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2927 2.4806 2.6496 67.46% check_for_negative_density() 10 0.03112 0.2071 0.4066 10.35% Gravity::make_radial_gravity() 21 0.2916 0.3077 0.3243 8.26% amrex::Copy() 193 0.09658 0.1114 0.1238 3.15% Castro::initData() 1 0.03759 0.07334 0.1032 2.63% FabArray::setVal() 143 0.09281 0.0965 0.09977 2.54% Castro::estTimeStep() 21 0.02772 0.05781 0.09746 2.48% Castro::normalize_species() 62 0.05005 0.05962 0.07016 1.79% FabArray::ParallelCopy_nowait() 41 0.05907 0.06332 0.06827 1.74% FabArray::ParallelCopy_finish() 41 0.05068 0.05467 0.061 1.55% FillPatchIterator::Initialize 41 0.04392 0.05241 0.06055 1.54% Castro::reset_internal_energy(Fab) 1008 0.0485 0.05047 0.05244 1.34% StateData::FillBoundary(geom) 41 0.03532 0.03973 0.046 1.17% Castro::construct_new_gravity_source() 10 0.02906 0.03168 0.03436 0.87% Castro::initialize_do_advance() 10 0.02264 0.02587 0.02873 0.73% Gravity::interpolate_monopole_grav() 21 0.02645 0.02687 0.02737 0.70% Castro::computeTemp() 63 0.01876 0.02004 0.0211 0.54% FabArray::Saxpy() 20 0.01611 0.01828 0.02044 0.52% FabArray::setDomainBndry() 41 0.01522 0.01757 0.01885 0.48% MultiFab::contains_nan() 20 0.01309 0.01493 0.01744 0.44% Castro::initialize_advance() 10 0.01546 0.01612 0.0166 0.42% Castro::construct_old_gravity_source() 10 0.01437 0.01529 0.01615 0.41% VisMF::Write(FabArray) 2 0.0101 0.01144 0.01585 0.40% Amr::writePlotFile() 2 0.009893 0.01357 0.01491 0.38% Castro::construct_new_source() 50 0.007349 0.007988 0.00857 0.22% Castro::initMFs() 1 0.006448 0.007036 0.00798 0.20% Amr::coarseTimeStep() 10 0.001246 0.005472 0.007705 0.20% main() 1 0.006486 0.006925 0.007158 0.18% Gravity::get_new_grav_vector() 11 0.004432 0.00494 0.005656 0.14% Gravity::get_old_grav_vector() 10 0.002678 0.003065 0.003617 0.09% Castro::finalize_do_advance() 10 0.001254 0.00131 0.001417 0.04% AmrLevel::FillPatch() 41 0.0009571 0.001112 0.001265 0.03% Amr::timeStep() 10 0.0001428 0.0002036 0.0003589 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002944 0.0003275 0.000344 0.01% Castro::clean_state() 62 0.0001797 0.0002062 0.000251 0.01% Castro::do_advance_ctu() 10 0.000186 0.0002088 0.000233 0.01% Castro::do_old_sources() 10 0.0001015 0.0001295 0.0001575 0.00% FillPatchIterator::FillFromLevel0() 41 0.000134 0.0001455 0.0001563 0.00% StateDataPhysBCFunct::() 41 0.0001238 0.0001329 0.0001511 0.00% FabArray::ParallelCopy() 41 0.0001016 0.0001288 0.000147 0.00% Castro::construct_old_source() 50 7.46e-05 0.0001 0.0001266 0.00% FillPatchSingleLevel 41 8.251e-05 8.83e-05 9.927e-05 0.00% Amr::FinalizeInit() 1 3.52e-06 1.613e-05 9.725e-05 0.00% Castro::Castro() 1 4.473e-05 6.475e-05 8.484e-05 0.00% Castro::subcycle_advance_ctu() 10 4.789e-05 6.929e-05 8.448e-05 0.00% Castro::apply_source_to_state() 20 5.807e-05 6.817e-05 8.36e-05 0.00% Castro::do_new_sources() 10 6.323e-05 7.349e-05 8.359e-05 0.00% Castro::advance() 10 4.463e-05 6.289e-05 7.65e-05 0.00% Castro::expand_state() 10 3.619e-05 4.621e-05 6.708e-05 0.00% Amr::defBaseLevel() 1 3.636e-05 4.551e-05 6.412e-05 0.00% Castro::construct_old_gravity() 10 3.823e-05 4.827e-05 5.765e-05 0.00% Castro::construct_new_gravity() 10 3.052e-05 3.722e-05 4.55e-05 0.00% Castro::check_for_nan() 20 3.043e-05 3.433e-05 3.816e-05 0.00% Castro::post_timestep() 10 1.439e-05 1.919e-05 2.387e-05 0.00% Castro::post_init() 1 1.51e-05 1.695e-05 2.011e-05 0.00% Castro::computeNewDt() 9 8.803e-06 1.062e-05 1.284e-05 0.00% Amr::InitializeInit() 1 2.694e-06 3.507e-06 5.878e-06 0.00% Castro::computeInitialDt() 2 3.427e-06 3.902e-06 5.802e-06 0.00% Amr::init() 1 1.775e-06 2.34e-06 3.165e-06 0.00% Amr::initialInit() 1 1.361e-06 1.916e-06 2.581e-06 0.00% Other 261 0.01658 0.02011 0.02266 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.926 3.927 3.928 100.00% Amr::coarseTimeStep() 10 3.739 3.739 3.739 95.20% Amr::timeStep() 10 3.721 3.724 3.728 94.91% Castro::advance() 10 3.704 3.704 3.705 94.32% Castro::subcycle_advance_ctu() 10 3.595 3.599 3.607 91.83% Castro::do_advance_ctu() 10 3.595 3.599 3.607 91.83% Castro::construct_ctu_hydro_source() 10 2.704 2.713 2.724 69.35% check_for_negative_density() 10 0.03112 0.2071 0.4066 10.35% Gravity::make_radial_gravity() 21 0.3135 0.3296 0.3456 8.80% AmrLevel::FillPatch() 41 0.2459 0.2757 0.3048 7.76% FillPatchIterator::Initialize 41 0.2078 0.2283 0.2493 6.35% Castro::initialize_do_advance() 10 0.2066 0.2244 0.2436 6.20% Gravity::get_new_grav_vector() 11 0.2207 0.2246 0.2286 5.82% Castro::construct_old_gravity() 10 0.1927 0.2051 0.2174 5.53% Gravity::get_old_grav_vector() 10 0.1917 0.2042 0.2164 5.51% Castro::construct_new_gravity() 10 0.199 0.2021 0.2057 5.24% Castro::expand_state() 10 0.1351 0.1542 0.1739 4.43% FillPatchIterator::FillFromLevel0() 41 0.1475 0.1583 0.1701 4.33% FillPatchSingleLevel 41 0.1474 0.1582 0.17 4.33% Amr::init() 1 0.1667 0.1673 0.1681 4.28% Amr::initialInit() 1 0.1504 0.151 0.1518 3.87% Castro::clean_state() 62 0.1261 0.137 0.1494 3.80% Castro::do_old_sources() 10 0.1305 0.1354 0.1375 3.50% FabArray::ParallelCopy() 41 0.1105 0.1182 0.1262 3.21% Amr::InitializeInit() 1 0.05865 0.09469 0.1241 3.16% Amr::defBaseLevel() 1 0.05865 0.09468 0.1241 3.16% amrex::Copy() 193 0.09658 0.1114 0.1238 3.15% Castro::initData() 1 0.04176 0.07754 0.1074 2.73% Castro::initialize_advance() 10 0.09227 0.1001 0.1044 2.66% FabArray::setVal() 143 0.09281 0.0965 0.09977 2.54% Castro::estTimeStep() 21 0.02772 0.05781 0.09746 2.48% Amr::FinalizeInit() 1 0.02666 0.05631 0.09316 2.37% Castro::do_new_sources() 10 0.07528 0.08043 0.08707 2.22% Castro::computeTemp() 63 0.06806 0.07084 0.07334 1.87% Castro::normalize_species() 62 0.05005 0.05962 0.07016 1.79% Castro::computeInitialDt() 2 0.002154 0.03182 0.06863 1.75% FabArray::ParallelCopy_nowait() 41 0.05919 0.06343 0.06839 1.74% FabArray::ParallelCopy_finish() 41 0.05068 0.05467 0.061 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04882 0.0508 0.05277 1.34% Castro::reset_internal_energy(Fab) 1008 0.0485 0.05047 0.05244 1.34% StateDataPhysBCFunct::() 41 0.03544 0.03987 0.04613 1.17% StateData::FillBoundary(geom) 41 0.03532 0.03973 0.046 1.17% Castro::construct_new_source() 50 0.03654 0.03967 0.04266 1.09% Castro::construct_new_gravity_source() 10 0.02906 0.03168 0.03436 0.87% Amr::writePlotFile() 2 0.02936 0.02941 0.02951 0.75% Gravity::interpolate_monopole_grav() 21 0.02645 0.02687 0.02737 0.70% Castro::finalize_do_advance() 10 0.01099 0.01843 0.02621 0.67% Castro::post_init() 1 0.02346 0.02365 0.02398 0.61% Castro::post_timestep() 10 0.01657 0.01923 0.023 0.59% Castro::apply_source_to_state() 20 0.01617 0.01835 0.02052 0.52% FabArray::Saxpy() 20 0.01611 0.01828 0.02044 0.52% FabArray::setDomainBndry() 41 0.01522 0.01757 0.01885 0.48% Castro::check_for_nan() 20 0.01312 0.01496 0.01748 0.44% MultiFab::contains_nan() 20 0.01309 0.01493 0.01744 0.44% Castro::construct_old_source() 50 0.01444 0.01539 0.01627 0.41% Castro::construct_old_gravity_source() 10 0.01437 0.01529 0.01615 0.41% VisMF::Write(FabArray) 2 0.0101 0.01144 0.01585 0.40% Castro::Castro() 1 0.01003 0.01079 0.0117 0.30% Castro::computeNewDt() 9 0.008867 0.008877 0.008887 0.23% Castro::initMFs() 1 0.006448 0.007036 0.00798 0.20% Other 261 0.02806 0.03331 0.03762 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 29 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6826 KiB 6829 KiB 6831 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4573 KiB 4579 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 236 KiB 266 KiB 297 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2827 KiB 2829 KiB 2830 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 203 KiB 214 KiB 224 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 46 KiB 50 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 72 KiB 73 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 66 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized