Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:01 UTC on 2025-05-19. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-1-g81753a71 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014742868 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.356323244 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.347213462 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.359817196 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.387912845 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35574201 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.348676081 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.344148926 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.382599187 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.349094822 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.354595535 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.866491981 seconds Ending run at 05:19:06 UTC on 2025-05-19. Run time = 4.630665229 Run time without initialization = 4.460164473 Average number of zones advanced per microsecond: 0.588 Average number of zones advanced per microsecond per rank: 0.073 TinyProfiler total time across processes [min...avg...max]: 4.6295 ... 4.6300 ... 4.6307 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2713 2.4053 2.5405 54.86% Amr::writePlotFile() 2 0.8642 0.8671 0.8679 18.74% check_for_negative_density() 10 0.1006 0.2309 0.3683 7.95% Gravity::make_radial_gravity() 21 0.2937 0.3041 0.3159 6.82% Castro::initData() 1 0.0375 0.07121 0.103 2.22% amrex::Copy() 193 0.08584 0.09553 0.1011 2.18% Castro::estTimeStep() 21 0.03335 0.06337 0.09988 2.16% FabArray::setVal() 143 0.08289 0.09039 0.09655 2.08% Castro::normalize_species() 62 0.05102 0.05785 0.06838 1.48% FabArray::ParallelCopy_finish() 41 0.04206 0.05118 0.06649 1.44% Castro::reset_internal_energy(Fab) 1008 0.04543 0.049 0.05163 1.11% FabArray::ParallelCopy_nowait() 41 0.0442 0.04616 0.04753 1.03% FillPatchIterator::Initialize 41 0.03253 0.03608 0.03899 0.84% StateData::FillBoundary(geom) 41 0.03011 0.03459 0.03859 0.83% Castro::construct_new_gravity_source() 10 0.02627 0.02765 0.02983 0.64% Gravity::interpolate_monopole_grav() 21 0.02647 0.02681 0.02756 0.60% Castro::initialize_do_advance() 10 0.01858 0.02237 0.02533 0.55% Castro::computeTemp() 63 0.01862 0.01972 0.02036 0.44% FabArray::Saxpy() 20 0.01398 0.0148 0.01578 0.34% Castro::initialize_advance() 10 0.01426 0.01516 0.01576 0.34% MultiFab::contains_nan() 20 0.01144 0.0128 0.0145 0.31% VisMF::Write(FabArray) 2 0.009232 0.01011 0.013 0.28% FabArray::setDomainBndry() 41 0.006899 0.01102 0.0126 0.27% Castro::construct_old_gravity_source() 10 0.01092 0.0116 0.01209 0.26% Castro::initMFs() 1 0.006449 0.006844 0.008752 0.19% Castro::construct_new_source() 50 0.006484 0.006876 0.007069 0.15% main() 1 0.005968 0.006402 0.006925 0.15% Amr::coarseTimeStep() 10 0.001807 0.004288 0.005935 0.13% Gravity::get_new_grav_vector() 11 0.002731 0.004203 0.005382 0.12% Gravity::get_old_grav_vector() 10 0.001634 0.002272 0.002976 0.06% Castro::finalize_do_advance() 10 0.001202 0.001243 0.001295 0.03% AmrLevel::FillPatch() 41 0.000836 0.001021 0.001101 0.02% Amr::timeStep() 10 0.000132 0.000204 0.0003771 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002789 0.0003023 0.0003319 0.01% Castro::do_advance_ctu() 10 0.0001664 0.0001931 0.0002429 0.01% Castro::clean_state() 62 0.0001674 0.0001898 0.0002153 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001064 0.0001226 0.000155 0.00% StateDataPhysBCFunct::() 41 9.748e-05 0.0001173 0.0001508 0.00% Castro::do_old_sources() 10 9.798e-05 0.0001108 0.0001318 0.00% FabArray::ParallelCopy() 41 8.907e-05 9.72e-05 0.0001169 0.00% Amr::defBaseLevel() 1 4.204e-05 5.699e-05 0.0001057 0.00% Castro::construct_old_source() 50 6.327e-05 7.887e-05 0.0001054 0.00% Castro::Castro() 1 4.257e-05 7.686e-05 9.415e-05 0.00% Amr::FinalizeInit() 1 4.141e-06 1.59e-05 9.251e-05 0.00% Castro::advance() 10 4.605e-05 6.501e-05 8.479e-05 0.00% Castro::do_new_sources() 10 5.722e-05 6.597e-05 7.976e-05 0.00% Castro::subcycle_advance_ctu() 10 5.033e-05 6.44e-05 7.768e-05 0.00% FillPatchSingleLevel 41 6.023e-05 7.063e-05 7.585e-05 0.00% Castro::apply_source_to_state() 20 4.073e-05 5.244e-05 6.102e-05 0.00% Castro::construct_old_gravity() 10 3.336e-05 4.207e-05 5.533e-05 0.00% Castro::construct_new_gravity() 10 3.071e-05 3.609e-05 4.277e-05 0.00% Castro::expand_state() 10 2.447e-05 3.051e-05 4.241e-05 0.00% Castro::check_for_nan() 20 2.591e-05 3.022e-05 3.399e-05 0.00% Castro::post_init() 1 1.463e-05 1.902e-05 2.997e-05 0.00% Castro::post_timestep() 10 1.453e-05 1.908e-05 2.19e-05 0.00% Amr::InitializeInit() 1 2.304e-06 3.133e-06 5.852e-06 0.00% Amr::init() 1 1.601e-06 2.459e-06 5.06e-06 0.00% Castro::computeInitialDt() 2 3.061e-06 3.78e-06 4.264e-06 0.00% Amr::initialInit() 1 1.589e-06 1.915e-06 2.269e-06 0.00% Other 270 0.01664 0.02001 0.0224 0.48% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.629 4.63 4.631 100.00% Amr::coarseTimeStep() 10 3.587 3.587 3.587 77.46% Amr::timeStep() 10 3.571 3.573 3.575 77.21% Castro::advance() 10 3.554 3.554 3.555 76.77% Castro::subcycle_advance_ctu() 10 3.448 3.455 3.464 74.80% Castro::do_advance_ctu() 10 3.448 3.455 3.464 74.80% Castro::construct_ctu_hydro_source() 10 2.656 2.662 2.67 57.66% Amr::writePlotFile() 2 0.8815 0.8816 0.8817 19.04% check_for_negative_density() 10 0.1006 0.2309 0.3683 7.95% Gravity::make_radial_gravity() 21 0.3106 0.3215 0.3303 7.13% AmrLevel::FillPatch() 41 0.2111 0.2209 0.2317 5.00% Gravity::get_new_grav_vector() 11 0.2198 0.2235 0.2276 4.92% Castro::construct_new_gravity() 10 0.1942 0.1979 0.2015 4.35% Castro::construct_old_gravity() 10 0.1821 0.1884 0.1977 4.27% Gravity::get_old_grav_vector() 10 0.1812 0.1876 0.1967 4.25% Castro::initialize_do_advance() 10 0.1768 0.1849 0.1927 4.16% FillPatchIterator::Initialize 41 0.1738 0.1795 0.1911 4.13% Amr::init() 1 0.1688 0.17 0.1702 3.68% Amr::initialInit() 1 0.1539 0.155 0.1553 3.35% FillPatchIterator::FillFromLevel0() 41 0.1272 0.1324 0.1448 3.13% FillPatchSingleLevel 41 0.1271 0.1323 0.1447 3.12% Castro::clean_state() 62 0.1219 0.1328 0.1443 3.12% Castro::expand_state() 10 0.1175 0.1227 0.1296 2.80% Amr::InitializeInit() 1 0.05968 0.09336 0.1255 2.71% Amr::defBaseLevel() 1 0.05968 0.09335 0.1255 2.71% Castro::do_old_sources() 10 0.1027 0.1071 0.1115 2.41% FabArray::ParallelCopy() 41 0.08964 0.09753 0.1109 2.39% Castro::initData() 1 0.04178 0.07531 0.1073 2.32% Castro::initialize_advance() 10 0.08619 0.09456 0.1013 2.19% amrex::Copy() 193 0.08584 0.09553 0.1011 2.18% Castro::estTimeStep() 21 0.03335 0.06337 0.09988 2.16% FabArray::setVal() 143 0.08289 0.09039 0.09655 2.08% Amr::FinalizeInit() 1 0.02959 0.06167 0.09555 2.06% Castro::do_new_sources() 10 0.0711 0.07429 0.07934 1.71% Castro::computeTemp() 63 0.06433 0.06902 0.07229 1.56% Castro::normalize_species() 62 0.05102 0.05785 0.06838 1.48% Castro::computeInitialDt() 2 0.002219 0.03421 0.06806 1.47% FabArray::ParallelCopy_finish() 41 0.04206 0.05118 0.06649 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04571 0.04931 0.05193 1.12% Castro::reset_internal_energy(Fab) 1008 0.04543 0.049 0.05163 1.11% FabArray::ParallelCopy_nowait() 41 0.0443 0.04626 0.04762 1.03% StateDataPhysBCFunct::() 41 0.03022 0.0347 0.0387 0.84% StateData::FillBoundary(geom) 41 0.03011 0.03459 0.03859 0.83% Castro::construct_new_source() 50 0.03306 0.03453 0.0369 0.80% Castro::construct_new_gravity_source() 10 0.02627 0.02765 0.02983 0.64% Gravity::interpolate_monopole_grav() 21 0.02647 0.02681 0.02756 0.60% Castro::post_init() 1 0.02659 0.02671 0.02682 0.58% Castro::finalize_do_advance() 10 0.01698 0.02183 0.02463 0.53% Castro::post_timestep() 10 0.01646 0.01813 0.01995 0.43% Castro::apply_source_to_state() 20 0.01403 0.01486 0.01583 0.34% FabArray::Saxpy() 20 0.01398 0.0148 0.01578 0.34% Castro::check_for_nan() 20 0.01148 0.01283 0.01453 0.31% MultiFab::contains_nan() 20 0.01144 0.0128 0.0145 0.31% VisMF::Write(FabArray) 2 0.009232 0.01011 0.013 0.28% FabArray::setDomainBndry() 41 0.006899 0.01102 0.0126 0.27% Castro::construct_old_source() 50 0.01098 0.01168 0.01217 0.26% Castro::construct_old_gravity_source() 10 0.01092 0.0116 0.01209 0.26% Castro::Castro() 1 0.01031 0.01108 0.01189 0.26% Castro::initMFs() 1 0.006449 0.006844 0.008752 0.19% Other 270 0.03588 0.04191 0.0459 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 20 B 23 B 28 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 10 MiB 11 MiB 12 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8669 KiB 8676 KiB 8678 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6872 KiB 6874 KiB 6875 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7137 KiB 7141 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 3721 KiB 3728 KiB 3737 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 169 KiB 178 KiB 189 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 14 KiB 17 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2301 KiB 2302 KiB 2303 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 171 KiB 177 KiB 181 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 28 KiB 31 KiB 36 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2029 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 60 KiB 62 KiB 63 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 50 KiB 52 KiB 54 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized