Initializing AMReX (25.03-15-g546cc5e16431-dirty)...
MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (25.03-15-g546cc5e16431-dirty) initialized

Starting run at 05:19:01 UTC on 2025-05-19.
Successfully read inputs file ... 

Castro git describe: 25.05-3-g91c85de54
AMReX git describe: 25.03-15-g546cc5e16-dirty
Microphysics git describe: 25.05-1-g81753a71

reading extern runtime parameters ...
3 Species: 
C12  O16  Mg24  
Successfully read inputs file ... 
INITIAL GRIDS 
  Level 0   8 grids  262144 cells  100 % of domain
            smallest grid: 32 x 32 x 32  biggest grid: 32 x 32 x 32

PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.014742868  seconds

[Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells

STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05


[STEP 1] Coarse TimeStep time: 0.356323244
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells

STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05


[STEP 2] Coarse TimeStep time: 0.347213462
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells

STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05


[STEP 3] Coarse TimeStep time: 0.359817196
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells

STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05


[STEP 4] Coarse TimeStep time: 0.387912845
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells

STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05


[STEP 5] Coarse TimeStep time: 0.35574201
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells

STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05


[STEP 6] Coarse TimeStep time: 0.348676081
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells

STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05


[STEP 7] Coarse TimeStep time: 0.344148926
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells

STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05


[STEP 8] Coarse TimeStep time: 0.382599187
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells

STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05


[STEP 9] Coarse TimeStep time: 0.349094822
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells

STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05


[STEP 10] Coarse TimeStep time: 0.354595535
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.866491981  seconds


Ending run at 05:19:06 UTC on 2025-05-19.
Run time = 4.630665229
Run time without initialization = 4.460164473

  Average number of zones advanced per microsecond: 0.588
  Average number of zones advanced per microsecond per rank: 0.073



TinyProfiler total time across processes [min...avg...max]: 4.6295 ... 4.6300 ... 4.6307

-------------------------------------------------------------------------------------------
Name                                        NCalls  Excl. Min  Excl. Avg  Excl. Max   Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source()            10     2.2713     2.4053     2.5405  54.86%
Amr::writePlotFile()                             2     0.8642     0.8671     0.8679  18.74%
check_for_negative_density()                    10     0.1006     0.2309     0.3683   7.95%
Gravity::make_radial_gravity()                  21     0.2937     0.3041     0.3159   6.82%
Castro::initData()                               1     0.0375    0.07121      0.103   2.22%
amrex::Copy()                                  193    0.08584    0.09553     0.1011   2.18%
Castro::estTimeStep()                           21    0.03335    0.06337    0.09988   2.16%
FabArray::setVal()                             143    0.08289    0.09039    0.09655   2.08%
Castro::normalize_species()                     62    0.05102    0.05785    0.06838   1.48%
FabArray::ParallelCopy_finish()                 41    0.04206    0.05118    0.06649   1.44%
Castro::reset_internal_energy(Fab)            1008    0.04543      0.049    0.05163   1.11%
FabArray::ParallelCopy_nowait()                 41     0.0442    0.04616    0.04753   1.03%
FillPatchIterator::Initialize                   41    0.03253    0.03608    0.03899   0.84%
StateData::FillBoundary(geom)                   41    0.03011    0.03459    0.03859   0.83%
Castro::construct_new_gravity_source()          10    0.02627    0.02765    0.02983   0.64%
Gravity::interpolate_monopole_grav()            21    0.02647    0.02681    0.02756   0.60%
Castro::initialize_do_advance()                 10    0.01858    0.02237    0.02533   0.55%
Castro::computeTemp()                           63    0.01862    0.01972    0.02036   0.44%
FabArray::Saxpy()                               20    0.01398     0.0148    0.01578   0.34%
Castro::initialize_advance()                    10    0.01426    0.01516    0.01576   0.34%
MultiFab::contains_nan()                        20    0.01144     0.0128     0.0145   0.31%
VisMF::Write(FabArray)                           2   0.009232    0.01011      0.013   0.28%
FabArray::setDomainBndry()                      41   0.006899    0.01102     0.0126   0.27%
Castro::construct_old_gravity_source()          10    0.01092     0.0116    0.01209   0.26%
Castro::initMFs()                                1   0.006449   0.006844   0.008752   0.19%
Castro::construct_new_source()                  50   0.006484   0.006876   0.007069   0.15%
main()                                           1   0.005968   0.006402   0.006925   0.15%
Amr::coarseTimeStep()                           10   0.001807   0.004288   0.005935   0.13%
Gravity::get_new_grav_vector()                  11   0.002731   0.004203   0.005382   0.12%
Gravity::get_old_grav_vector()                  10   0.001634   0.002272   0.002976   0.06%
Castro::finalize_do_advance()                   10   0.001202   0.001243   0.001295   0.03%
AmrLevel::FillPatch()                           41   0.000836   0.001021   0.001101   0.02%
Amr::timeStep()                                 10   0.000132   0.000204  0.0003771   0.01%
Castro::reset_internal_energy(MultiFab)         63  0.0002789  0.0003023  0.0003319   0.01%
Castro::do_advance_ctu()                        10  0.0001664  0.0001931  0.0002429   0.01%
Castro::clean_state()                           62  0.0001674  0.0001898  0.0002153   0.00%
FillPatchIterator::FillFromLevel0()             41  0.0001064  0.0001226   0.000155   0.00%
StateDataPhysBCFunct::()                        41  9.748e-05  0.0001173  0.0001508   0.00%
Castro::do_old_sources()                        10  9.798e-05  0.0001108  0.0001318   0.00%
FabArray::ParallelCopy()                        41  8.907e-05   9.72e-05  0.0001169   0.00%
Amr::defBaseLevel()                              1  4.204e-05  5.699e-05  0.0001057   0.00%
Castro::construct_old_source()                  50  6.327e-05  7.887e-05  0.0001054   0.00%
Castro::Castro()                                 1  4.257e-05  7.686e-05  9.415e-05   0.00%
Amr::FinalizeInit()                              1  4.141e-06   1.59e-05  9.251e-05   0.00%
Castro::advance()                               10  4.605e-05  6.501e-05  8.479e-05   0.00%
Castro::do_new_sources()                        10  5.722e-05  6.597e-05  7.976e-05   0.00%
Castro::subcycle_advance_ctu()                  10  5.033e-05   6.44e-05  7.768e-05   0.00%
FillPatchSingleLevel                            41  6.023e-05  7.063e-05  7.585e-05   0.00%
Castro::apply_source_to_state()                 20  4.073e-05  5.244e-05  6.102e-05   0.00%
Castro::construct_old_gravity()                 10  3.336e-05  4.207e-05  5.533e-05   0.00%
Castro::construct_new_gravity()                 10  3.071e-05  3.609e-05  4.277e-05   0.00%
Castro::expand_state()                          10  2.447e-05  3.051e-05  4.241e-05   0.00%
Castro::check_for_nan()                         20  2.591e-05  3.022e-05  3.399e-05   0.00%
Castro::post_init()                              1  1.463e-05  1.902e-05  2.997e-05   0.00%
Castro::post_timestep()                         10  1.453e-05  1.908e-05   2.19e-05   0.00%
Amr::InitializeInit()                            1  2.304e-06  3.133e-06  5.852e-06   0.00%
Amr::init()                                      1  1.601e-06  2.459e-06   5.06e-06   0.00%
Castro::computeInitialDt()                       2  3.061e-06   3.78e-06  4.264e-06   0.00%
Amr::initialInit()                               1  1.589e-06  1.915e-06  2.269e-06   0.00%
Other                                          270    0.01664    0.02001     0.0224   0.48%
-------------------------------------------------------------------------------------------

-------------------------------------------------------------------------------------------
Name                                        NCalls  Incl. Min  Incl. Avg  Incl. Max   Max %
-------------------------------------------------------------------------------------------
main()                                           1      4.629       4.63      4.631 100.00%
Amr::coarseTimeStep()                           10      3.587      3.587      3.587  77.46%
Amr::timeStep()                                 10      3.571      3.573      3.575  77.21%
Castro::advance()                               10      3.554      3.554      3.555  76.77%
Castro::subcycle_advance_ctu()                  10      3.448      3.455      3.464  74.80%
Castro::do_advance_ctu()                        10      3.448      3.455      3.464  74.80%
Castro::construct_ctu_hydro_source()            10      2.656      2.662       2.67  57.66%
Amr::writePlotFile()                             2     0.8815     0.8816     0.8817  19.04%
check_for_negative_density()                    10     0.1006     0.2309     0.3683   7.95%
Gravity::make_radial_gravity()                  21     0.3106     0.3215     0.3303   7.13%
AmrLevel::FillPatch()                           41     0.2111     0.2209     0.2317   5.00%
Gravity::get_new_grav_vector()                  11     0.2198     0.2235     0.2276   4.92%
Castro::construct_new_gravity()                 10     0.1942     0.1979     0.2015   4.35%
Castro::construct_old_gravity()                 10     0.1821     0.1884     0.1977   4.27%
Gravity::get_old_grav_vector()                  10     0.1812     0.1876     0.1967   4.25%
Castro::initialize_do_advance()                 10     0.1768     0.1849     0.1927   4.16%
FillPatchIterator::Initialize                   41     0.1738     0.1795     0.1911   4.13%
Amr::init()                                      1     0.1688       0.17     0.1702   3.68%
Amr::initialInit()                               1     0.1539      0.155     0.1553   3.35%
FillPatchIterator::FillFromLevel0()             41     0.1272     0.1324     0.1448   3.13%
FillPatchSingleLevel                            41     0.1271     0.1323     0.1447   3.12%
Castro::clean_state()                           62     0.1219     0.1328     0.1443   3.12%
Castro::expand_state()                          10     0.1175     0.1227     0.1296   2.80%
Amr::InitializeInit()                            1    0.05968    0.09336     0.1255   2.71%
Amr::defBaseLevel()                              1    0.05968    0.09335     0.1255   2.71%
Castro::do_old_sources()                        10     0.1027     0.1071     0.1115   2.41%
FabArray::ParallelCopy()                        41    0.08964    0.09753     0.1109   2.39%
Castro::initData()                               1    0.04178    0.07531     0.1073   2.32%
Castro::initialize_advance()                    10    0.08619    0.09456     0.1013   2.19%
amrex::Copy()                                  193    0.08584    0.09553     0.1011   2.18%
Castro::estTimeStep()                           21    0.03335    0.06337    0.09988   2.16%
FabArray::setVal()                             143    0.08289    0.09039    0.09655   2.08%
Amr::FinalizeInit()                              1    0.02959    0.06167    0.09555   2.06%
Castro::do_new_sources()                        10     0.0711    0.07429    0.07934   1.71%
Castro::computeTemp()                           63    0.06433    0.06902    0.07229   1.56%
Castro::normalize_species()                     62    0.05102    0.05785    0.06838   1.48%
Castro::computeInitialDt()                       2   0.002219    0.03421    0.06806   1.47%
FabArray::ParallelCopy_finish()                 41    0.04206    0.05118    0.06649   1.44%
Castro::reset_internal_energy(MultiFab)         63    0.04571    0.04931    0.05193   1.12%
Castro::reset_internal_energy(Fab)            1008    0.04543      0.049    0.05163   1.11%
FabArray::ParallelCopy_nowait()                 41     0.0443    0.04626    0.04762   1.03%
StateDataPhysBCFunct::()                        41    0.03022     0.0347     0.0387   0.84%
StateData::FillBoundary(geom)                   41    0.03011    0.03459    0.03859   0.83%
Castro::construct_new_source()                  50    0.03306    0.03453     0.0369   0.80%
Castro::construct_new_gravity_source()          10    0.02627    0.02765    0.02983   0.64%
Gravity::interpolate_monopole_grav()            21    0.02647    0.02681    0.02756   0.60%
Castro::post_init()                              1    0.02659    0.02671    0.02682   0.58%
Castro::finalize_do_advance()                   10    0.01698    0.02183    0.02463   0.53%
Castro::post_timestep()                         10    0.01646    0.01813    0.01995   0.43%
Castro::apply_source_to_state()                 20    0.01403    0.01486    0.01583   0.34%
FabArray::Saxpy()                               20    0.01398     0.0148    0.01578   0.34%
Castro::check_for_nan()                         20    0.01148    0.01283    0.01453   0.31%
MultiFab::contains_nan()                        20    0.01144     0.0128     0.0145   0.31%
VisMF::Write(FabArray)                           2   0.009232    0.01011      0.013   0.28%
FabArray::setDomainBndry()                      41   0.006899    0.01102     0.0126   0.27%
Castro::construct_old_source()                  50    0.01098    0.01168    0.01217   0.26%
Castro::construct_old_gravity_source()          10    0.01092     0.0116    0.01209   0.26%
Castro::Castro()                                 1    0.01031    0.01108    0.01189   0.26%
Castro::initMFs()                                1   0.006449   0.006844   0.008752   0.19%
Other                                          270    0.03588    0.04191     0.0459   0.99%
-------------------------------------------------------------------------------------------

Unused ParmParse Variables:
  [TOP]::amr.ref_ratio(nvals = 4)  :: [2, 2, 2, 2]
  [TOP]::amr.regrid_int(nvals = 4)  :: [2, 2, 2, 2]

Pinned Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name                            Nalloc  Nfree  AvgMem min  AvgMem avg  AvgMem max  MaxMem min  MaxMem avg  MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize()       8      8      20   B      23   B      28   B    8192 KiB    8192 KiB    8192 KiB
---------------------------------------------------------------------------------------------------------------------

Cpu Memory Usage:
---------------------------------------------------------------------------------------------------------------------------
Name                                  Nalloc  Nfree  AvgMem min  AvgMem avg  AvgMem max  MaxMem min  MaxMem avg  MaxMem max
---------------------------------------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source()    2880   2880      10 MiB      11 MiB      12 MiB      24 MiB      24 MiB      24 MiB
Castro::initMFs()                         48     48    8669 KiB    8676 KiB    8678 KiB    8712 KiB    8712 KiB    8712 KiB
Castro::swap_state_time_levels()          32     32    6872 KiB    6874 KiB    6875 KiB    7153 KiB    7153 KiB    7153 KiB
StateData::define()                       32     32    7137 KiB    7141 KiB    7142 KiB    7153 KiB    7153 KiB    7153 KiB
Castro::initialize_do_advance()           80     80    3721 KiB    3728 KiB    3737 KiB    5000 KiB    5000 KiB    5000 KiB
FillPatchIterator::Initialize            328    328     169 KiB     178 KiB     189 KiB    5000 KiB    5000 KiB    5000 KiB
Amr::writePlotFile()                      16     16      13 KiB      14 KiB      17 KiB    3584 KiB    3584 KiB    3584 KiB
Castro::initialize_advance()              80     80    2301 KiB    2302 KiB    2303 KiB    3000 KiB    3000 KiB    3000 KiB
Gravity::make_radial_gravity()           168    168     171 KiB     177 KiB     181 KiB    2560 KiB    2560 KiB    2560 KiB
FabArray::ParallelCopy_nowait()          656    656      28 KiB      31 KiB      36 KiB    2170 KiB    2170 KiB    2170 KiB
Castro::buildMetrics()                    32     32    2029 KiB    2030 KiB    2030 KiB    2037 KiB    2037 KiB    2037 KiB
Gravity::get_new_grav_vector()            88     88      60 KiB      62 KiB      63 KiB    1286 KiB    1286 KiB    1286 KiB
Gravity::get_old_grav_vector()            80     80      50 KiB      52 KiB      54 KiB    1286 KiB    1286 KiB    1286 KiB
---------------------------------------------------------------------------------------------------------------------------

AMReX (25.03-15-g546cc5e16431-dirty) finalized