Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:22:25 UTC on 2025-05-20. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-3-ga091b800 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014423583 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344154938 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338754328 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316402503 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315228002 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352941065 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303581608 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296999138 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295429349 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296618797 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295575856 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007502836 seconds Ending run at 05:22:28 UTC on 2025-05-20. Run time = 3.343119301 Run time without initialization = 3.167772675 Average number of zones advanced per microsecond: 0.828 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3421 ... 3.3427 ... 3.3434 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1746 2.2283 2.2571 67.51% Gravity::make_radial_gravity() 21 0.2902 0.2961 0.313 9.36% check_for_negative_density() 10 0.03975 0.07558 0.1359 4.06% Castro::initData() 1 0.03795 0.07257 0.1108 3.32% Castro::estTimeStep() 21 0.03239 0.06617 0.1019 3.05% FabArray::ParallelCopy_finish() 41 0.03905 0.05289 0.09304 2.78% amrex::Copy() 193 0.06277 0.07944 0.09063 2.71% FabArray::setVal() 143 0.05169 0.06606 0.06958 2.08% Castro::normalize_species() 62 0.04525 0.04743 0.05008 1.50% Castro::reset_internal_energy(Fab) 1008 0.04305 0.04591 0.04794 1.43% FabArray::ParallelCopy_nowait() 41 0.03569 0.04083 0.04245 1.27% StateData::FillBoundary(geom) 41 0.02933 0.03245 0.03655 1.09% FillPatchIterator::Initialize 41 0.02787 0.03262 0.03617 1.08% Gravity::interpolate_monopole_grav() 21 0.0265 0.02684 0.02734 0.82% Castro::construct_new_gravity_source() 10 0.02265 0.02419 0.02642 0.79% Castro::computeTemp() 63 0.017 0.01824 0.01895 0.57% Castro::initialize_do_advance() 10 0.01189 0.016 0.01726 0.52% FabArray::Saxpy() 20 0.01024 0.01237 0.01341 0.40% Castro::initialize_advance() 10 0.005309 0.01126 0.01327 0.40% MultiFab::contains_nan() 20 0.0104 0.01122 0.01224 0.37% Amr::writePlotFile() 2 0.007267 0.01006 0.01222 0.37% VisMF::Write(FabArray) 2 0.008649 0.009493 0.01203 0.36% FabArray::setDomainBndry() 41 0.007475 0.009672 0.01086 0.32% Castro::construct_old_gravity_source() 10 0.006769 0.009422 0.01008 0.30% Castro::initMFs() 1 0.006504 0.007116 0.008365 0.25% Castro::construct_new_source() 50 0.005326 0.006131 0.006564 0.20% Castro::enforce_min_density() 62 0.005703 0.006008 0.006428 0.19% main() 1 0.003715 0.003914 0.004106 0.12% Gravity::get_new_grav_vector() 11 0.002823 0.003406 0.00377 0.11% Amr::coarseTimeStep() 10 0.001852 0.002413 0.003232 0.10% Gravity::get_old_grav_vector() 10 0.001596 0.002085 0.00252 0.08% Castro::finalize_do_advance() 10 0.0005248 0.001133 0.001314 0.04% AmrLevel::FillPatch() 41 0.0007532 0.0008504 0.0009219 0.03% Amr::timeStep() 10 0.0001333 0.0001847 0.0003786 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002772 0.0002931 0.000309 0.01% Castro::do_advance_ctu() 10 0.0001508 0.0001757 0.0002091 0.01% Castro::clean_state() 62 0.0001483 0.0001651 0.0001858 0.01% StateDataPhysBCFunct::() 41 0.0001003 0.0001182 0.000156 0.00% Castro::do_old_sources() 10 7.991e-05 9.954e-05 0.0001384 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001024 0.0001131 0.000133 0.00% FabArray::ParallelCopy() 41 9.056e-05 9.487e-05 0.0001106 0.00% Castro::Castro() 1 4.699e-05 7.077e-05 9.412e-05 0.00% Amr::FinalizeInit() 1 3.614e-06 1.529e-05 9.051e-05 0.00% Castro::construct_old_source() 50 5.05e-05 6.833e-05 8.289e-05 0.00% FillPatchSingleLevel 41 6.133e-05 6.727e-05 7.576e-05 0.00% Castro::do_new_sources() 10 5.37e-05 5.781e-05 6.824e-05 0.00% Castro::apply_source_to_state() 20 4.214e-05 5.13e-05 6.794e-05 0.00% Castro::advance() 10 4.358e-05 5.055e-05 5.788e-05 0.00% Castro::subcycle_advance_ctu() 10 4.195e-05 4.829e-05 5.281e-05 0.00% Castro::construct_new_gravity() 10 2.595e-05 3.508e-05 4.746e-05 0.00% Castro::construct_old_gravity() 10 3.036e-05 3.847e-05 4.453e-05 0.00% Amr::defBaseLevel() 1 3.467e-05 3.806e-05 4.183e-05 0.00% Castro::check_for_nan() 20 2.514e-05 2.782e-05 3.195e-05 0.00% Castro::expand_state() 10 2.319e-05 2.709e-05 3.189e-05 0.00% Castro::post_init() 1 1.469e-05 1.696e-05 2.226e-05 0.00% Castro::post_timestep() 10 1.421e-05 1.522e-05 1.701e-05 0.00% Castro::computeNewDt() 9 8.984e-06 1.035e-05 1.201e-05 0.00% Amr::InitializeInit() 1 2.455e-06 3.229e-06 5.108e-06 0.00% Castro::computeInitialDt() 2 3.018e-06 3.543e-06 4.145e-06 0.00% Amr::init() 1 1.519e-06 1.999e-06 2.789e-06 0.00% Amr::initialInit() 1 1.257e-06 1.937e-06 2.256e-06 0.00% Other 199 0.01027 0.01265 0.01466 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.342 3.343 3.343 100.00% Amr::coarseTimeStep() 10 3.156 3.156 3.156 94.40% Amr::timeStep() 10 3.143 3.144 3.145 94.06% Castro::advance() 10 3.128 3.128 3.129 93.57% Castro::subcycle_advance_ctu() 10 3.051 3.055 3.073 91.90% Castro::do_advance_ctu() 10 3.051 3.055 3.073 91.90% Castro::construct_ctu_hydro_source() 10 2.319 2.326 2.331 69.73% Gravity::make_radial_gravity() 21 0.3061 0.3121 0.3262 9.76% AmrLevel::FillPatch() 41 0.1886 0.2014 0.2185 6.54% Gravity::get_new_grav_vector() 11 0.2078 0.2092 0.2102 6.29% Castro::construct_old_gravity() 10 0.1781 0.1833 0.1943 5.81% FillPatchIterator::Initialize 41 0.159 0.1689 0.1939 5.80% Gravity::get_old_grav_vector() 10 0.1774 0.1827 0.1936 5.79% Castro::construct_new_gravity() 10 0.1858 0.1865 0.1871 5.60% Amr::init() 1 0.174 0.1748 0.1753 5.24% Castro::initialize_do_advance() 10 0.1564 0.1616 0.1682 5.03% Amr::initialInit() 1 0.1588 0.1601 0.1607 4.81% FillPatchIterator::FillFromLevel0() 41 0.1183 0.1267 0.1585 4.74% FillPatchSingleLevel 41 0.1182 0.1265 0.1584 4.74% check_for_negative_density() 10 0.03975 0.07558 0.1359 4.06% Amr::InitializeInit() 1 0.05942 0.09412 0.1326 3.97% Amr::defBaseLevel() 1 0.05942 0.09412 0.1326 3.97% FabArray::ParallelCopy() 41 0.08146 0.09391 0.1289 3.86% Castro::expand_state() 10 0.1031 0.109 0.1217 3.64% Castro::clean_state() 62 0.1119 0.1171 0.1212 3.63% Castro::initData() 1 0.04223 0.07655 0.1144 3.42% Castro::do_old_sources() 10 0.09609 0.1006 0.1055 3.15% Castro::estTimeStep() 21 0.03239 0.06617 0.1019 3.05% Amr::FinalizeInit() 1 0.0262 0.06596 0.1009 3.02% FabArray::ParallelCopy_finish() 41 0.03905 0.05289 0.09304 2.78% amrex::Copy() 193 0.06277 0.07944 0.09063 2.71% Castro::computeInitialDt() 2 0.002126 0.04141 0.07629 2.28% Castro::initialize_advance() 10 0.05165 0.06985 0.07397 2.21% FabArray::setVal() 143 0.05169 0.06606 0.06958 2.08% Castro::do_new_sources() 10 0.05813 0.06353 0.06886 2.06% Castro::computeTemp() 63 0.06036 0.06444 0.06719 2.01% Castro::normalize_species() 62 0.04525 0.04743 0.05008 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04336 0.0462 0.04824 1.44% Castro::reset_internal_energy(Fab) 1008 0.04305 0.04591 0.04794 1.43% FabArray::ParallelCopy_nowait() 41 0.03579 0.04092 0.04253 1.27% StateDataPhysBCFunct::() 41 0.02944 0.03256 0.03665 1.10% StateData::FillBoundary(geom) 41 0.02933 0.03245 0.03655 1.09% Castro::construct_new_source() 50 0.02797 0.03032 0.03273 0.98% Gravity::interpolate_monopole_grav() 21 0.0265 0.02684 0.02734 0.82% Castro::construct_new_gravity_source() 10 0.02265 0.02419 0.02642 0.79% Castro::post_init() 1 0.02372 0.02397 0.02412 0.72% Amr::writePlotFile() 2 0.02217 0.02227 0.02274 0.68% Castro::finalize_do_advance() 10 0.01242 0.01731 0.0222 0.66% Castro::post_timestep() 10 0.01559 0.01582 0.01666 0.50% Castro::apply_source_to_state() 20 0.01029 0.01242 0.01348 0.40% FabArray::Saxpy() 20 0.01024 0.01237 0.01341 0.40% Castro::check_for_nan() 20 0.01043 0.01125 0.01228 0.37% MultiFab::contains_nan() 20 0.0104 0.01122 0.01224 0.37% VisMF::Write(FabArray) 2 0.008649 0.009493 0.01203 0.36% Castro::Castro() 1 0.01028 0.01106 0.0119 0.36% FabArray::setDomainBndry() 41 0.007475 0.009672 0.01086 0.32% Castro::construct_old_source() 50 0.00682 0.009491 0.01016 0.30% Castro::construct_old_gravity_source() 10 0.006769 0.009422 0.01008 0.30% Castro::computeNewDt() 9 0.008592 0.008601 0.008607 0.26% Castro::initMFs() 1 0.006504 0.007116 0.008365 0.25% Castro::enforce_min_density() 62 0.005703 0.006008 0.006428 0.19% Other 199 0.01987 0.02402 0.02765 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6754 KiB 6762 KiB 6767 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4559 KiB 4565 KiB 4594 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 226 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2806 KiB 2808 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 238 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized