Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:35 UTC on 2025-05-21. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-3-ga091b800 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.021625534 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.429358525 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.379081536 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.375312474 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.393291839 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37779127 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.375225434 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.376324653 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.3759693 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.379223935 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.376220128 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012707127 seconds Ending run at 05:20:39 UTC on 2025-05-21. Run time = 4.05053102 Run time without initialization = 3.858076034 Average number of zones advanced per microsecond: 0.679 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.0487 ... 4.0497 ... 4.0510 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2794 2.5386 2.7318 67.43% check_for_negative_density() 10 0.02071 0.2192 0.4844 11.96% Gravity::make_radial_gravity() 21 0.2967 0.3141 0.3321 8.20% amrex::Copy() 193 0.1052 0.1217 0.136 3.36% FabArray::setVal() 143 0.0985 0.1058 0.1104 2.73% Castro::initData() 1 0.04052 0.07339 0.106 2.62% Castro::estTimeStep() 21 0.02182 0.05954 0.1005 2.48% FabArray::ParallelCopy_finish() 41 0.05496 0.06022 0.07601 1.88% FabArray::ParallelCopy_nowait() 41 0.05944 0.06712 0.07167 1.77% FillPatchIterator::Initialize 41 0.04787 0.05675 0.06446 1.59% Castro::reset_internal_energy(Fab) 1008 0.04746 0.05286 0.05594 1.38% Castro::normalize_species() 62 0.04703 0.05008 0.05424 1.34% StateData::FillBoundary(geom) 41 0.03525 0.03996 0.04547 1.12% Castro::construct_new_gravity_source() 10 0.03081 0.03313 0.03582 0.88% Castro::initialize_do_advance() 10 0.02436 0.02758 0.03118 0.77% Gravity::interpolate_monopole_grav() 21 0.02657 0.02707 0.02741 0.68% FabArray::Saxpy() 20 0.01836 0.02038 0.02273 0.56% Castro::computeTemp() 63 0.01823 0.02041 0.02194 0.54% FabArray::setDomainBndry() 41 0.01879 0.02008 0.02184 0.54% Castro::construct_old_gravity_source() 10 0.01618 0.0172 0.01854 0.46% VisMF::Write(FabArray) 2 0.01221 0.0145 0.01778 0.44% Castro::initialize_advance() 10 0.01495 0.01614 0.01718 0.42% MultiFab::contains_nan() 20 0.01223 0.01439 0.01655 0.41% Amr::writePlotFile() 2 0.01108 0.0142 0.01628 0.40% Castro::initMFs() 1 0.009103 0.01013 0.01193 0.29% Castro::construct_new_source() 50 0.007413 0.008738 0.00981 0.24% main() 1 0.005925 0.006742 0.007109 0.18% Gravity::get_new_grav_vector() 11 0.004179 0.005402 0.006207 0.15% Gravity::get_old_grav_vector() 10 0.002602 0.003104 0.003575 0.09% Amr::coarseTimeStep() 10 0.0008032 0.001884 0.002694 0.07% Castro::finalize_do_advance() 10 0.001313 0.001335 0.001362 0.03% AmrLevel::FillPatch() 41 0.001021 0.001044 0.001076 0.03% Amr::timeStep() 10 0.0001154 0.0002296 0.000602 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003127 0.0003352 0.0003593 0.01% Castro::do_advance_ctu() 10 0.0001928 0.000226 0.0002788 0.01% Castro::clean_state() 62 0.0001987 0.000222 0.0002484 0.01% StateDataPhysBCFunct::() 41 0.0001251 0.0001395 0.0001683 0.00% Castro::Castro() 1 7.327e-05 0.0001144 0.0001631 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001327 0.0001491 0.0001611 0.00% Castro::do_old_sources() 10 0.0001118 0.0001344 0.000145 0.00% FabArray::ParallelCopy() 41 0.0001112 0.0001241 0.0001401 0.00% Amr::FinalizeInit() 1 4.399e-06 2.048e-05 0.0001225 0.00% Castro::construct_old_source() 50 8.314e-05 0.0001 0.0001122 0.00% FillPatchSingleLevel 41 7.606e-05 9.22e-05 0.0001098 0.00% Castro::do_new_sources() 10 6.171e-05 7.641e-05 8.929e-05 0.00% Castro::subcycle_advance_ctu() 10 5.753e-05 6.999e-05 8.411e-05 0.00% Castro::apply_source_to_state() 20 6.302e-05 7.149e-05 8.158e-05 0.00% Castro::advance() 10 4.93e-05 6.348e-05 7.486e-05 0.00% Castro::construct_old_gravity() 10 4.047e-05 4.783e-05 6.24e-05 0.00% Castro::expand_state() 10 3.486e-05 4.435e-05 5.348e-05 0.00% Castro::construct_new_gravity() 10 2.948e-05 3.782e-05 5.163e-05 0.00% Amr::defBaseLevel() 1 4.063e-05 4.408e-05 4.933e-05 0.00% Castro::check_for_nan() 20 2.958e-05 3.385e-05 3.714e-05 0.00% Castro::post_timestep() 10 1.346e-05 2.239e-05 3.67e-05 0.00% Castro::post_init() 1 1.485e-05 1.762e-05 2.329e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.658e-06 1.158e-05 1.374e-05 0.00% Castro::computeNewDt() 9 9.755e-06 1.06e-05 1.139e-05 0.00% Amr::InitializeInit() 1 2.403e-06 3.461e-06 7.388e-06 0.00% Castro::computeInitialDt() 2 4.22e-06 5.026e-06 5.783e-06 0.00% Amr::init() 1 1.863e-06 2.594e-06 4.928e-06 0.00% Amr::initialInit() 1 1.494e-06 2.34e-06 4.276e-06 0.00% Other 260 0.02004 0.02444 0.02711 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.049 4.05 4.051 100.00% Amr::coarseTimeStep() 10 3.838 3.838 3.838 94.75% Amr::timeStep() 10 3.825 3.826 3.827 94.47% Castro::advance() 10 3.808 3.809 3.81 94.04% Castro::subcycle_advance_ctu() 10 3.697 3.7 3.704 91.45% Castro::do_advance_ctu() 10 3.697 3.699 3.704 91.44% Castro::construct_ctu_hydro_source() 10 2.776 2.781 2.787 68.79% check_for_negative_density() 10 0.02071 0.2192 0.4844 11.96% Gravity::make_radial_gravity() 21 0.3227 0.339 0.3558 8.78% AmrLevel::FillPatch() 41 0.2763 0.2954 0.3171 7.83% FillPatchIterator::Initialize 41 0.234 0.2448 0.2586 6.38% Castro::initialize_do_advance() 10 0.2222 0.2376 0.2511 6.20% Gravity::get_new_grav_vector() 11 0.2335 0.2353 0.2368 5.85% Castro::construct_old_gravity() 10 0.1945 0.2077 0.2222 5.49% Gravity::get_old_grav_vector() 10 0.1936 0.2067 0.2211 5.46% Castro::construct_new_gravity() 10 0.2048 0.2064 0.2079 5.13% Amr::init() 1 0.191 0.1915 0.1923 4.75% Castro::expand_state() 10 0.147 0.1648 0.1807 4.46% FillPatchIterator::FillFromLevel0() 41 0.1638 0.1679 0.1744 4.31% FillPatchSingleLevel 41 0.1636 0.1678 0.1742 4.30% Amr::initialInit() 1 0.1693 0.1697 0.1705 4.21% Castro::do_old_sources() 10 0.1441 0.1457 0.1473 3.64% Castro::clean_state() 62 0.1268 0.1302 0.1377 3.40% Amr::InitializeInit() 1 0.07102 0.1039 0.1365 3.37% Amr::defBaseLevel() 1 0.07101 0.1039 0.1365 3.37% amrex::Copy() 193 0.1052 0.1217 0.136 3.36% FabArray::ParallelCopy() 41 0.1236 0.1276 0.1357 3.35% Castro::initData() 1 0.04557 0.07847 0.1114 2.75% FabArray::setVal() 143 0.0985 0.1058 0.1104 2.73% Castro::initialize_advance() 10 0.09913 0.1042 0.1066 2.63% Castro::estTimeStep() 21 0.02182 0.05954 0.1005 2.48% Amr::FinalizeInit() 1 0.0331 0.06583 0.09951 2.46% Castro::do_new_sources() 10 0.07722 0.0824 0.08685 2.14% Castro::computeTemp() 63 0.066 0.0736 0.07806 1.93% FabArray::ParallelCopy_finish() 41 0.05496 0.06022 0.07601 1.88% FabArray::ParallelCopy_nowait() 41 0.05957 0.06725 0.07181 1.77% Castro::computeInitialDt() 2 0.002467 0.03509 0.06879 1.70% Castro::reset_internal_energy(MultiFab) 63 0.04778 0.05319 0.05627 1.39% Castro::reset_internal_energy(Fab) 1008 0.04746 0.05286 0.05594 1.38% Castro::normalize_species() 62 0.04703 0.05008 0.05424 1.34% StateDataPhysBCFunct::() 41 0.03538 0.0401 0.04564 1.13% StateData::FillBoundary(geom) 41 0.03525 0.03996 0.04547 1.12% Castro::construct_new_source() 50 0.03822 0.04187 0.04499 1.11% Castro::construct_new_gravity_source() 10 0.03081 0.03313 0.03582 0.88% Amr::writePlotFile() 2 0.03449 0.0346 0.03473 0.86% Castro::post_init() 1 0.02972 0.03008 0.03038 0.75% Gravity::interpolate_monopole_grav() 21 0.02657 0.02707 0.02741 0.68% Castro::finalize_do_advance() 10 0.01168 0.01677 0.02401 0.59% Castro::apply_source_to_state() 20 0.01842 0.02045 0.02281 0.56% FabArray::Saxpy() 20 0.01836 0.02038 0.02273 0.56% FabArray::setDomainBndry() 41 0.01879 0.02008 0.02184 0.54% Castro::construct_old_source() 50 0.01629 0.0173 0.01865 0.46% Castro::construct_old_gravity_source() 10 0.01618 0.0172 0.01854 0.46% Castro::Castro() 1 0.01556 0.01696 0.01842 0.45% VisMF::Write(FabArray) 2 0.01221 0.0145 0.01778 0.44% Castro::post_timestep() 10 0.01612 0.0169 0.01776 0.44% Castro::check_for_nan() 20 0.01226 0.01442 0.01658 0.41% MultiFab::contains_nan() 20 0.01223 0.01439 0.01655 0.41% Castro::initMFs() 1 0.009103 0.01013 0.01193 0.29% Castro::computeNewDt() 9 0.009007 0.009028 0.009054 0.22% AmrLevel::AmrLevel(dm) 1 0.007382 0.00787 0.008296 0.20% Other 260 0.02633 0.03219 0.0364 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 30 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8664 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6787 KiB 6793 KiB 6795 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4562 KiB 4564 KiB 4566 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 255 KiB 277 KiB 300 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 21 KiB 23 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2821 KiB 2822 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 203 KiB 213 KiB 223 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 48 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 74 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 65 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized