Initializing AMReX (25.03-15-g546cc5e16431-dirty)...
MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (25.03-15-g546cc5e16431-dirty) initialized
Starting run at 05:39:00 UTC on 2025-05-22.
Successfully read inputs file ...
Castro git describe: 25.05-3-g91c85de54
AMReX git describe: 25.03-15-g546cc5e16-dirty
Microphysics git describe: 25.05-4-gc846aaab
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.014774286 seconds
[Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[STEP 1] Coarse TimeStep time: 0.345528893
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[STEP 2] Coarse TimeStep time: 0.343581159
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[STEP 3] Coarse TimeStep time: 0.319276817
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[STEP 4] Coarse TimeStep time: 0.315185706
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[STEP 5] Coarse TimeStep time: 0.365809196
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[STEP 6] Coarse TimeStep time: 0.303580297
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[STEP 7] Coarse TimeStep time: 0.293263286
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[STEP 8] Coarse TimeStep time: 0.302565309
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[STEP 9] Coarse TimeStep time: 0.295942954
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
[STEP 10] Coarse TimeStep time: 0.297957866
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.007475746 seconds
Ending run at 05:39:03 UTC on 2025-05-22.
Run time = 3.361290872
Run time without initialization = 3.19540385
Average number of zones advanced per microsecond: 0.820
Average number of zones advanced per microsecond per rank: 0.103
TinyProfiler total time across processes [min...avg...max]: 3.3599 ... 3.3608 ... 3.3613
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.1676 2.2156 2.2660 67.41%
Gravity::make_radial_gravity() 21 0.2829 0.2927 0.3061 9.11%
check_for_negative_density() 10 0.03717 0.101 0.1535 4.57%
Castro::initData() 1 0.03739 0.07052 0.1019 3.03%
Castro::estTimeStep() 21 0.02268 0.05965 0.09479 2.82%
amrex::Copy() 193 0.07438 0.08478 0.09454 2.81%
FabArray::setVal() 143 0.06587 0.07139 0.07613 2.27%
FabArray::ParallelCopy_finish() 41 0.0484 0.05259 0.06139 1.83%
Castro::normalize_species() 62 0.04508 0.04599 0.047 1.40%
Castro::reset_internal_energy(Fab) 1008 0.04513 0.04629 0.04696 1.40%
FabArray::ParallelCopy_nowait() 41 0.0401 0.04252 0.04325 1.29%
FillPatchIterator::Initialize 41 0.02821 0.03383 0.03673 1.09%
StateData::FillBoundary(geom) 41 0.03132 0.03255 0.0359 1.07%
Gravity::interpolate_monopole_grav() 21 0.0264 0.02672 0.02698 0.80%
Castro::construct_new_gravity_source() 10 0.02345 0.02511 0.02661 0.79%
Castro::computeTemp() 63 0.01794 0.01821 0.01867 0.56%
Castro::initialize_do_advance() 10 0.01195 0.01679 0.01862 0.55%
Castro::initialize_advance() 10 0.01063 0.01248 0.01462 0.44%
FabArray::Saxpy() 20 0.01146 0.01317 0.01442 0.43%
MultiFab::contains_nan() 20 0.01027 0.0112 0.01259 0.37%
VisMF::Write(FabArray) 2 0.009241 0.00979 0.0122 0.36%
FabArray::setDomainBndry() 41 0.00758 0.01042 0.01157 0.34%
Castro::construct_old_gravity_source() 10 0.008604 0.0101 0.01053 0.31%
Amr::writePlotFile() 2 0.007369 0.009735 0.01045 0.31%
Castro::initMFs() 1 0.006313 0.006537 0.006918 0.21%
Castro::enforce_min_density() 62 0.005691 0.00605 0.006472 0.19%
Castro::construct_new_source() 50 0.005967 0.006113 0.006277 0.19%
main() 1 0.004137 0.004352 0.004609 0.14%
Gravity::get_new_grav_vector() 11 0.003163 0.003659 0.003885 0.12%
Gravity::get_old_grav_vector() 10 0.001748 0.002181 0.002843 0.08%
Amr::coarseTimeStep() 10 0.0008797 0.001592 0.002193 0.07%
Castro::finalize_do_advance() 10 0.0005691 0.001073 0.001258 0.04%
AmrLevel::FillPatch() 41 0.000852 0.001036 0.001189 0.04%
Amr::timeStep() 10 0.0001428 0.0001998 0.0004804 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002844 0.0002946 0.000332 0.01%
Castro::do_advance_ctu() 10 0.0001384 0.00018 0.0002141 0.01%
Castro::clean_state() 62 0.0001481 0.0001648 0.0001783 0.01%
StateDataPhysBCFunct::() 41 9.915e-05 0.000119 0.0001457 0.00%
Castro::do_old_sources() 10 7.771e-05 0.0001035 0.00013 0.00%
FillPatchIterator::FillFromLevel0() 41 0.0001054 0.0001099 0.0001162 0.00%
FabArray::ParallelCopy() 41 8.961e-05 9.972e-05 0.0001118 0.00%
Amr::FinalizeInit() 1 3.756e-06 1.822e-05 0.0001114 0.00%
Castro::Castro() 1 4.723e-05 7.633e-05 9.992e-05 0.00%
Castro::construct_old_source() 50 5.532e-05 6.999e-05 9.12e-05 0.00%
FillPatchSingleLevel 41 6.476e-05 6.912e-05 8.003e-05 0.00%
Castro::subcycle_advance_ctu() 10 4.373e-05 5.664e-05 7.751e-05 0.00%
Castro::do_new_sources() 10 6.194e-05 6.493e-05 6.962e-05 0.00%
Castro::advance() 10 4.152e-05 5.094e-05 6.573e-05 0.00%
Amr::defBaseLevel() 1 3.796e-05 4.648e-05 6.153e-05 0.00%
Castro::apply_source_to_state() 20 4.369e-05 4.791e-05 5.236e-05 0.00%
Castro::construct_old_gravity() 10 3.521e-05 4.173e-05 4.916e-05 0.00%
Castro::construct_new_gravity() 10 3.298e-05 3.804e-05 4.911e-05 0.00%
Castro::expand_state() 10 2.169e-05 2.968e-05 3.449e-05 0.00%
Castro::check_for_nan() 20 2.618e-05 2.839e-05 3.02e-05 0.00%
Castro::post_init() 1 1.478e-05 1.762e-05 2.357e-05 0.00%
Castro::post_timestep() 10 1.557e-05 1.758e-05 1.992e-05 0.00%
Castro::computeNewDt() 9 9.456e-06 1.043e-05 1.202e-05 0.00%
Amr::initialInit() 1 1.456e-06 3.748e-06 9.528e-06 0.00%
Amr::InitializeInit() 1 2.522e-06 3.187e-06 6.274e-06 0.00%
Castro::computeInitialDt() 2 3.18e-06 3.805e-06 4.365e-06 0.00%
Amr::init() 1 1.671e-06 2.089e-06 2.769e-06 0.00%
Other 199 0.0103 0.01299 0.01456 0.43%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.36 3.361 3.361 100.00%
Amr::coarseTimeStep() 10 3.183 3.183 3.183 94.71%
Amr::timeStep() 10 3.172 3.172 3.173 94.39%
Castro::advance() 10 3.155 3.156 3.156 93.90%
Castro::subcycle_advance_ctu() 10 3.076 3.079 3.083 91.73%
Castro::do_advance_ctu() 10 3.076 3.079 3.083 91.72%
Castro::construct_ctu_hydro_source() 10 2.325 2.338 2.345 69.75%
Gravity::make_radial_gravity() 21 0.2994 0.3101 0.3212 9.56%
AmrLevel::FillPatch() 41 0.1939 0.2069 0.2207 6.57%
Gravity::get_new_grav_vector() 11 0.2055 0.2061 0.2066 6.15%
Castro::construct_old_gravity() 10 0.1795 0.1867 0.1976 5.88%
Gravity::get_old_grav_vector() 10 0.1786 0.186 0.197 5.86%
Castro::construct_new_gravity() 10 0.1826 0.1834 0.1843 5.48%
FillPatchIterator::Initialize 41 0.1637 0.1724 0.1798 5.35%
Castro::initialize_do_advance() 10 0.1486 0.1616 0.1673 4.98%
Amr::init() 1 0.1642 0.1652 0.1656 4.93%
check_for_negative_density() 10 0.03717 0.101 0.1535 4.57%
Amr::initialInit() 1 0.1493 0.1503 0.1508 4.49%
FillPatchIterator::FillFromLevel0() 41 0.1235 0.1281 0.1333 3.97%
FillPatchSingleLevel 41 0.1233 0.128 0.1332 3.96%
Amr::InitializeInit() 1 0.05884 0.09198 0.1235 3.67%
Amr::defBaseLevel() 1 0.05884 0.09197 0.1235 3.67%
Castro::do_old_sources() 10 0.1011 0.1078 0.1191 3.54%
Castro::clean_state() 62 0.1147 0.1161 0.1176 3.50%
Castro::expand_state() 10 0.1007 0.1078 0.112 3.33%
Castro::initData() 1 0.04143 0.07449 0.1062 3.16%
FabArray::ParallelCopy() 41 0.09185 0.0953 0.1017 3.03%
Castro::estTimeStep() 21 0.02268 0.05965 0.09479 2.82%
amrex::Copy() 193 0.07438 0.08478 0.09454 2.81%
Amr::FinalizeInit() 1 0.02657 0.05834 0.09189 2.73%
Castro::initialize_advance() 10 0.06937 0.07382 0.07649 2.28%
FabArray::setVal() 143 0.06587 0.07139 0.07613 2.27%
Castro::do_new_sources() 10 0.06165 0.06547 0.07084 2.11%
Castro::computeInitialDt() 2 0.002153 0.03378 0.06726 2.00%
Castro::computeTemp() 63 0.06353 0.06479 0.06592 1.96%
FabArray::ParallelCopy_finish() 41 0.0484 0.05259 0.06139 1.83%
Castro::reset_internal_energy(MultiFab) 63 0.04542 0.04659 0.04726 1.41%
Castro::normalize_species() 62 0.04508 0.04599 0.047 1.40%
Castro::reset_internal_energy(Fab) 1008 0.04513 0.04629 0.04696 1.40%
FabArray::ParallelCopy_nowait() 41 0.0402 0.04262 0.04334 1.29%
StateDataPhysBCFunct::() 41 0.03143 0.03266 0.03605 1.07%
StateData::FillBoundary(geom) 41 0.03132 0.03255 0.0359 1.07%
Castro::construct_new_source() 50 0.02951 0.03122 0.03284 0.98%
Gravity::interpolate_monopole_grav() 21 0.0264 0.02672 0.02698 0.80%
Castro::construct_new_gravity_source() 10 0.02345 0.02511 0.02661 0.79%
Castro::post_init() 1 0.02383 0.02401 0.02416 0.72%
Castro::finalize_do_advance() 10 0.01218 0.0184 0.0228 0.68%
Amr::writePlotFile() 2 0.02238 0.02248 0.02269 0.68%
Castro::post_timestep() 10 0.01551 0.01596 0.01679 0.50%
Castro::apply_source_to_state() 20 0.0115 0.01322 0.01447 0.43%
FabArray::Saxpy() 20 0.01146 0.01317 0.01442 0.43%
Castro::check_for_nan() 20 0.0103 0.01123 0.01261 0.38%
MultiFab::contains_nan() 20 0.01027 0.0112 0.01259 0.37%
VisMF::Write(FabArray) 2 0.009241 0.00979 0.0122 0.36%
FabArray::setDomainBndry() 41 0.00758 0.01042 0.01157 0.34%
Castro::Castro() 1 0.01019 0.01086 0.01146 0.34%
Castro::construct_old_source() 50 0.00866 0.01017 0.0106 0.32%
Castro::construct_old_gravity_source() 10 0.008604 0.0101 0.01053 0.31%
Castro::computeNewDt() 9 0.008544 0.00856 0.008573 0.26%
Castro::initMFs() 1 0.006313 0.006537 0.006918 0.21%
Castro::enforce_min_density() 62 0.005691 0.00605 0.006472 0.19%
Other 199 0.02035 0.0245 0.02726 0.81%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
Pinned Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize() 8 8 28 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB
---------------------------------------------------------------------------------------------------------------------
Cpu Memory Usage:
---------------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB
Castro::initMFs() 48 48 8661 KiB 8670 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB
Castro::swap_state_time_levels() 32 32 6779 KiB 6783 KiB 6785 KiB 7153 KiB 7153 KiB 7153 KiB
StateData::define() 32 32 7133 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB
Castro::initialize_do_advance() 80 80 4573 KiB 4576 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB
FillPatchIterator::Initialize 328 328 214 KiB 228 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB
Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB
Castro::initialize_advance() 80 80 2814 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB
Gravity::make_radial_gravity() 168 168 227 KiB 235 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB
FabArray::ParallelCopy_nowait() 656 656 40 KiB 41 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB
Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB
Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB
Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB
---------------------------------------------------------------------------------------------------------------------------
AMReX (25.03-15-g546cc5e16431-dirty) finalized