Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:21 UTC on 2025-05-23. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-4-gc846aaab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015721267 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.351849284 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342306715 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319473355 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317851741 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.373040567 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304424845 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296637935 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297381051 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297032963 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296446917 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007655477 seconds Ending run at 05:18:24 UTC on 2025-05-23. Run time = 3.393404788 Run time without initialization = 3.208825579 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3923 ... 3.3930 ... 3.3942 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1765 2.2211 2.2651 66.73% Gravity::make_radial_gravity() 21 0.3 0.3055 0.3111 9.17% check_for_negative_density() 10 0.03336 0.07675 0.1269 3.74% Castro::initData() 1 0.042 0.07687 0.1165 3.43% Castro::estTimeStep() 21 0.02491 0.06754 0.1055 3.11% amrex::Copy() 193 0.08041 0.08524 0.0973 2.87% FabArray::setVal() 143 0.06846 0.07293 0.08096 2.39% FabArray::ParallelCopy_finish() 41 0.04405 0.0615 0.07383 2.18% Castro::normalize_species() 62 0.04613 0.05096 0.05887 1.73% Castro::reset_internal_energy(Fab) 1008 0.04347 0.04642 0.04764 1.40% FabArray::ParallelCopy_nowait() 41 0.03962 0.04218 0.0439 1.29% FillPatchIterator::Initialize 41 0.03011 0.03428 0.03891 1.15% StateData::FillBoundary(geom) 41 0.03039 0.03369 0.03683 1.09% Gravity::interpolate_monopole_grav() 21 0.02706 0.02777 0.02952 0.87% Castro::construct_new_gravity_source() 10 0.02351 0.02469 0.02614 0.77% Castro::computeTemp() 63 0.0175 0.01868 0.01929 0.57% Castro::initialize_do_advance() 10 0.01666 0.01803 0.01911 0.56% MultiFab::contains_nan() 20 0.01083 0.01206 0.01492 0.44% Castro::initialize_advance() 10 0.01101 0.01274 0.01486 0.44% FabArray::Saxpy() 20 0.01153 0.0131 0.01431 0.42% VisMF::Write(FabArray) 2 0.00918 0.009732 0.01266 0.37% Castro::construct_old_gravity_source() 10 0.008903 0.01001 0.01265 0.37% FabArray::setDomainBndry() 41 0.007706 0.0103 0.01144 0.34% Amr::writePlotFile() 2 0.007806 0.01066 0.01142 0.34% Castro::initMFs() 1 0.006533 0.007149 0.007585 0.22% Castro::construct_new_source() 50 0.00628 0.006525 0.006721 0.20% Castro::enforce_min_density() 62 0.005845 0.006215 0.006523 0.19% Amr::coarseTimeStep() 10 0.00139 0.003221 0.004609 0.14% main() 1 0.003776 0.004108 0.00437 0.13% Gravity::get_new_grav_vector() 11 0.002782 0.003412 0.00416 0.12% Gravity::get_old_grav_vector() 10 0.001748 0.002346 0.002677 0.08% Castro::finalize_do_advance() 10 0.001195 0.001296 0.001376 0.04% AmrLevel::FillPatch() 41 0.0008529 0.001021 0.001282 0.04% Amr::timeStep() 10 0.0001296 0.0002041 0.0005204 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002867 0.0003036 0.0003348 0.01% Castro::clean_state() 62 0.0001546 0.0001656 0.0001854 0.01% Castro::do_advance_ctu() 10 0.0001542 0.0001697 0.00018 0.01% StateDataPhysBCFunct::() 41 9.261e-05 0.0001054 0.0001442 0.00% FillPatchIterator::FillFromLevel0() 41 9.767e-05 0.0001112 0.0001411 0.00% Castro::do_old_sources() 10 7.356e-05 0.0001001 0.0001236 0.00% Castro::construct_old_source() 50 5.061e-05 7.496e-05 0.0001163 0.00% FabArray::ParallelCopy() 41 8.777e-05 9.495e-05 0.0001101 0.00% Amr::FinalizeInit() 1 3.454e-06 1.75e-05 0.0001095 0.00% Castro::Castro() 1 5.552e-05 6.587e-05 8.35e-05 0.00% Castro::apply_source_to_state() 20 4.29e-05 5.253e-05 7.827e-05 0.00% FillPatchSingleLevel 41 5.849e-05 6.53e-05 7.422e-05 0.00% Castro::do_new_sources() 10 5.083e-05 6.093e-05 7.198e-05 0.00% Castro::construct_old_gravity() 10 3.556e-05 4.447e-05 6.326e-05 0.00% Castro::subcycle_advance_ctu() 10 4.474e-05 5.259e-05 6.055e-05 0.00% Castro::advance() 10 4.359e-05 5.12e-05 5.857e-05 0.00% Amr::defBaseLevel() 1 4.048e-05 4.419e-05 5.013e-05 0.00% Castro::check_for_nan() 20 2.559e-05 2.947e-05 4.808e-05 0.00% Castro::construct_new_gravity() 10 3.086e-05 3.397e-05 4.244e-05 0.00% Castro::post_timestep() 10 1.356e-05 1.918e-05 3.933e-05 0.00% Castro::expand_state() 10 2.6e-05 3.026e-05 3.386e-05 0.00% Castro::post_init() 1 1.423e-05 1.845e-05 2.376e-05 0.00% Castro::computeNewDt() 9 9.231e-06 1.029e-05 1.124e-05 0.00% Amr::InitializeInit() 1 2.54e-06 3.168e-06 5.992e-06 0.00% Castro::computeInitialDt() 2 3.392e-06 3.79e-06 4.087e-06 0.00% Amr::init() 1 1.548e-06 2.092e-06 2.389e-06 0.00% Amr::initialInit() 1 1.49e-06 1.808e-06 2.254e-06 0.00% Other 199 0.01052 0.01303 0.01497 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.392 3.393 3.394 100.00% Amr::coarseTimeStep() 10 3.197 3.197 3.197 94.19% Amr::timeStep() 10 3.182 3.183 3.185 93.84% Castro::advance() 10 3.165 3.166 3.166 93.29% Castro::subcycle_advance_ctu() 10 3.084 3.087 3.09 91.05% Castro::do_advance_ctu() 10 3.084 3.087 3.09 91.04% Castro::construct_ctu_hydro_source() 10 2.316 2.32 2.326 68.52% Gravity::make_radial_gravity() 21 0.3158 0.3217 0.3261 9.61% AmrLevel::FillPatch() 41 0.199 0.2167 0.235 6.92% Gravity::get_new_grav_vector() 11 0.2133 0.2158 0.2179 6.42% FillPatchIterator::Initialize 41 0.1693 0.1824 0.1989 5.86% Castro::construct_old_gravity() 10 0.1912 0.1949 0.1986 5.85% Gravity::get_old_grav_vector() 10 0.1905 0.1942 0.1978 5.83% Castro::construct_new_gravity() 10 0.1874 0.1903 0.1918 5.65% Amr::init() 1 0.1835 0.184 0.1847 5.44% Castro::initialize_do_advance() 10 0.1637 0.1682 0.1746 5.14% Amr::initialInit() 1 0.1678 0.1683 0.1689 4.98% FillPatchIterator::FillFromLevel0() 41 0.1213 0.1378 0.1526 4.50% FillPatchSingleLevel 41 0.1212 0.1377 0.1525 4.49% Amr::InitializeInit() 1 0.06369 0.09865 0.1385 4.08% Amr::defBaseLevel() 1 0.06368 0.09865 0.1385 4.08% Castro::clean_state() 62 0.114 0.1219 0.1304 3.84% check_for_negative_density() 10 0.03336 0.07675 0.1269 3.74% Castro::initData() 1 0.04599 0.08087 0.1199 3.53% Castro::expand_state() 10 0.1066 0.1117 0.1176 3.46% Castro::do_old_sources() 10 0.1002 0.1112 0.1172 3.45% FabArray::ParallelCopy() 41 0.08814 0.1039 0.1162 3.42% Castro::estTimeStep() 21 0.02491 0.06754 0.1055 3.11% Amr::FinalizeInit() 1 0.02941 0.06966 0.1052 3.10% amrex::Copy() 193 0.08041 0.08524 0.0973 2.87% FabArray::setVal() 143 0.06846 0.07293 0.08096 2.39% Castro::initialize_advance() 10 0.07227 0.07543 0.07834 2.31% Castro::computeInitialDt() 2 0.002302 0.04235 0.07807 2.30% FabArray::ParallelCopy_finish() 41 0.04405 0.0615 0.07383 2.18% Castro::do_new_sources() 10 0.06315 0.06641 0.06955 2.05% Castro::computeTemp() 63 0.06128 0.0654 0.06681 1.97% Castro::normalize_species() 62 0.04613 0.05096 0.05887 1.73% Castro::reset_internal_energy(MultiFab) 63 0.04378 0.04672 0.04794 1.41% Castro::reset_internal_energy(Fab) 1008 0.04347 0.04642 0.04764 1.40% FabArray::ParallelCopy_nowait() 41 0.03972 0.04227 0.04399 1.30% StateDataPhysBCFunct::() 41 0.03049 0.0338 0.03693 1.09% StateData::FillBoundary(geom) 41 0.03039 0.03369 0.03683 1.09% Castro::construct_new_source() 50 0.02987 0.03122 0.03286 0.97% Gravity::interpolate_monopole_grav() 21 0.02706 0.02777 0.02952 0.87% Castro::post_init() 1 0.0265 0.02678 0.02705 0.80% Castro::construct_new_gravity_source() 10 0.02351 0.02469 0.02614 0.77% Amr::writePlotFile() 2 0.02317 0.02341 0.02361 0.70% Castro::finalize_do_advance() 10 0.0139 0.01726 0.0201 0.59% Castro::post_timestep() 10 0.01532 0.01692 0.01883 0.55% Castro::check_for_nan() 20 0.01085 0.01209 0.01496 0.44% MultiFab::contains_nan() 20 0.01083 0.01206 0.01492 0.44% Castro::apply_source_to_state() 20 0.01158 0.01315 0.01439 0.42% FabArray::Saxpy() 20 0.01153 0.0131 0.01431 0.42% Castro::construct_old_source() 50 0.008954 0.01008 0.01276 0.38% VisMF::Write(FabArray) 2 0.00918 0.009732 0.01266 0.37% Castro::construct_old_gravity_source() 10 0.008903 0.01001 0.01265 0.37% Castro::Castro() 1 0.009674 0.01123 0.01198 0.35% FabArray::setDomainBndry() 41 0.007706 0.0103 0.01144 0.34% Castro::computeNewDt() 9 0.009223 0.009236 0.009244 0.27% Castro::initMFs() 1 0.006533 0.007149 0.007585 0.22% Castro::enforce_min_density() 62 0.005845 0.006215 0.006523 0.19% Other 199 0.02037 0.02461 0.02829 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6739 KiB 6747 KiB 6749 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4542 KiB 4545 KiB 4549 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 234 KiB 252 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2798 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 241 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 73 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized