Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:34 UTC on 2025-05-26. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-4-gc846aaab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014892074 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346168611 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.347184664 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.335604442 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.3403261 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.348395483 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.33739303 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.335445092 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.334173632 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.333589666 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.333553185 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010195117 seconds Ending run at 05:19:37 UTC on 2025-05-26. Run time = 3.597524495 Run time without initialization = 3.410353779 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5949 ... 3.5967 ... 3.5979 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2232 2.3120 2.4504 68.11% Gravity::make_radial_gravity() 21 0.286 0.3007 0.3261 9.06% check_for_negative_density() 10 0.01961 0.1675 0.2542 7.07% Castro::initData() 1 0.03882 0.07549 0.1224 3.40% Castro::estTimeStep() 21 0.02326 0.07622 0.1176 3.27% FabArray::ParallelCopy_finish() 41 0.04076 0.05717 0.1145 3.18% amrex::Copy() 193 0.063 0.0873 0.1018 2.83% FabArray::setVal() 143 0.05981 0.0826 0.09139 2.54% Castro::normalize_species() 62 0.0455 0.0469 0.05137 1.43% Castro::reset_internal_energy(Fab) 1008 0.0444 0.0465 0.04782 1.33% FabArray::ParallelCopy_nowait() 41 0.03542 0.04422 0.04713 1.31% FillPatchIterator::Initialize 41 0.02526 0.03342 0.03808 1.06% StateData::FillBoundary(geom) 41 0.02941 0.03254 0.03551 0.99% Castro::construct_new_gravity_source() 10 0.02415 0.02894 0.03262 0.91% Gravity::interpolate_monopole_grav() 21 0.0266 0.02738 0.03113 0.87% Castro::computeTemp() 63 0.0175 0.01941 0.02244 0.62% Castro::initialize_do_advance() 10 0.009525 0.01852 0.02111 0.59% FabArray::Saxpy() 20 0.01306 0.01595 0.01781 0.50% Amr::writePlotFile() 2 0.008716 0.01178 0.01508 0.42% MultiFab::contains_nan() 20 0.01087 0.01227 0.01466 0.41% Castro::initialize_advance() 10 0.004251 0.01199 0.01353 0.38% Castro::construct_old_gravity_source() 10 0.006434 0.01201 0.01334 0.37% VisMF::Write(FabArray) 2 0.008474 0.009935 0.01268 0.35% FabArray::setDomainBndry() 41 0.006558 0.009925 0.01225 0.34% Castro::construct_new_source() 50 0.006365 0.007327 0.008232 0.23% Amr::coarseTimeStep() 10 0.00198 0.005983 0.008118 0.23% Castro::initMFs() 1 0.006552 0.007182 0.007832 0.22% Castro::enforce_min_density() 62 0.005696 0.006471 0.007161 0.20% main() 1 0.005271 0.006303 0.006863 0.19% Gravity::get_new_grav_vector() 11 0.002485 0.003688 0.004631 0.13% Gravity::get_old_grav_vector() 10 0.0014 0.002122 0.003402 0.09% Castro::finalize_do_advance() 10 0.0007433 0.001096 0.001304 0.04% AmrLevel::FillPatch() 41 0.0008853 0.001018 0.001133 0.03% Amr::timeStep() 10 0.0001298 0.0002091 0.0005505 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002902 0.000312 0.0003431 0.01% Castro::do_advance_ctu() 10 0.0001497 0.0001843 0.0002142 0.01% Castro::clean_state() 62 0.0001587 0.0001808 0.0002126 0.01% Castro::do_old_sources() 10 7.034e-05 0.0001069 0.0001291 0.00% FillPatchIterator::FillFromLevel0() 41 0.000102 0.0001117 0.0001215 0.00% StateDataPhysBCFunct::() 41 9.214e-05 0.0001001 0.0001195 0.00% FabArray::ParallelCopy() 41 7.502e-05 9.851e-05 0.0001123 0.00% Castro::construct_old_source() 50 3.857e-05 8.094e-05 0.0001026 0.00% Castro::do_new_sources() 10 5.537e-05 7.519e-05 9.188e-05 0.00% Amr::FinalizeInit() 1 3.501e-06 1.37e-05 7.918e-05 0.00% FillPatchSingleLevel 41 5.744e-05 6.645e-05 7.253e-05 0.00% Castro::apply_source_to_state() 20 3.474e-05 5.744e-05 7.175e-05 0.00% Castro::Castro() 1 5.162e-05 5.959e-05 6.614e-05 0.00% Castro::construct_old_gravity() 10 3.245e-05 4.308e-05 6.591e-05 0.00% Castro::advance() 10 3.847e-05 5.422e-05 6.524e-05 0.00% Castro::subcycle_advance_ctu() 10 4.343e-05 5.585e-05 6.333e-05 0.00% Castro::construct_new_gravity() 10 3.174e-05 3.902e-05 5.382e-05 0.00% Amr::defBaseLevel() 1 3.324e-05 4.129e-05 5.322e-05 0.00% Castro::post_timestep() 10 1.77e-05 2.193e-05 3.266e-05 0.00% Castro::expand_state() 10 2.254e-05 2.801e-05 3.232e-05 0.00% Castro::check_for_nan() 20 2.577e-05 2.79e-05 3.013e-05 0.00% Castro::computeNewDt() 9 8.831e-06 1.86e-05 2.921e-05 0.00% Castro::post_init() 1 1.314e-05 1.476e-05 1.679e-05 0.00% Amr::InitializeInit() 1 2.637e-06 3.501e-06 5.119e-06 0.00% Castro::computeInitialDt() 2 2.778e-06 3.59e-06 4.547e-06 0.00% Amr::initialInit() 1 1.412e-06 1.733e-06 2.324e-06 0.00% Amr::init() 1 1.631e-06 1.959e-06 2.184e-06 0.00% Other 199 0.01013 0.01278 0.01457 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.595 3.597 3.598 100.00% Amr::coarseTimeStep() 10 3.393 3.393 3.393 94.31% Amr::timeStep() 10 3.374 3.376 3.38 93.95% Castro::advance() 10 3.358 3.359 3.359 93.37% Castro::subcycle_advance_ctu() 10 3.265 3.271 3.297 91.64% Castro::do_advance_ctu() 10 3.265 3.271 3.297 91.64% Castro::construct_ctu_hydro_source() 10 2.492 2.501 2.509 69.75% Gravity::make_radial_gravity() 21 0.3032 0.3178 0.3381 9.40% check_for_negative_density() 10 0.01961 0.1675 0.2542 7.07% AmrLevel::FillPatch() 41 0.193 0.2132 0.2368 6.58% FillPatchIterator::Initialize 41 0.1602 0.1777 0.2137 5.94% Gravity::get_new_grav_vector() 11 0.2095 0.2111 0.2125 5.91% Castro::construct_old_gravity() 10 0.1872 0.1958 0.2116 5.88% Gravity::get_old_grav_vector() 10 0.1859 0.195 0.2109 5.86% Castro::construct_new_gravity() 10 0.1874 0.1887 0.19 5.28% Amr::init() 1 0.1857 0.1865 0.1872 5.20% FillPatchIterator::FillFromLevel0() 41 0.1207 0.1344 0.1818 5.05% FillPatchSingleLevel 41 0.1206 0.1343 0.1817 5.05% Castro::initialize_do_advance() 10 0.1622 0.1719 0.1816 5.05% Amr::initialInit() 1 0.1701 0.1714 0.1721 4.78% FabArray::ParallelCopy() 41 0.08727 0.1016 0.1501 4.17% Amr::InitializeInit() 1 0.05994 0.09696 0.1448 4.02% Amr::defBaseLevel() 1 0.05994 0.09696 0.1448 4.02% Castro::expand_state() 10 0.1039 0.1154 0.137 3.81% Castro::initData() 1 0.04286 0.07929 0.1266 3.52% Castro::clean_state() 62 0.1128 0.1189 0.1245 3.46% Castro::estTimeStep() 21 0.02326 0.07622 0.1176 3.27% FabArray::ParallelCopy_finish() 41 0.04076 0.05717 0.1145 3.18% Castro::do_old_sources() 10 0.1029 0.1076 0.1125 3.13% Amr::FinalizeInit() 1 0.02611 0.07442 0.1121 3.11% amrex::Copy() 193 0.063 0.0873 0.1018 2.83% FabArray::setVal() 143 0.05981 0.0826 0.09139 2.54% Castro::initialize_advance() 10 0.05659 0.08325 0.08881 2.47% Castro::computeInitialDt() 2 0.002152 0.05053 0.08808 2.45% Castro::do_new_sources() 10 0.0616 0.07131 0.07635 2.12% Castro::computeTemp() 63 0.06221 0.06623 0.06927 1.93% Castro::normalize_species() 62 0.0455 0.0469 0.05137 1.43% Castro::reset_internal_energy(MultiFab) 63 0.04471 0.04681 0.04816 1.34% Castro::reset_internal_energy(Fab) 1008 0.0444 0.0465 0.04782 1.33% FabArray::ParallelCopy_nowait() 41 0.03551 0.04431 0.04723 1.31% Castro::construct_new_source() 50 0.03052 0.03626 0.04078 1.13% StateDataPhysBCFunct::() 41 0.0295 0.03264 0.03561 0.99% StateData::FillBoundary(geom) 41 0.02941 0.03254 0.03551 0.99% Castro::construct_new_gravity_source() 10 0.02415 0.02894 0.03262 0.91% Gravity::interpolate_monopole_grav() 21 0.0266 0.02738 0.03113 0.87% Castro::finalize_do_advance() 10 0.01141 0.01673 0.02746 0.76% Amr::writePlotFile() 2 0.02532 0.02545 0.02587 0.72% Castro::post_init() 1 0.02322 0.02341 0.02353 0.65% Castro::post_timestep() 10 0.01511 0.0174 0.02079 0.58% Castro::apply_source_to_state() 20 0.01309 0.01601 0.01788 0.50% FabArray::Saxpy() 20 0.01306 0.01595 0.01781 0.50% Castro::check_for_nan() 20 0.01089 0.0123 0.01469 0.41% MultiFab::contains_nan() 20 0.01087 0.01227 0.01466 0.41% Castro::construct_old_source() 50 0.006472 0.01209 0.01344 0.37% Castro::construct_old_gravity_source() 10 0.006434 0.01201 0.01334 0.37% VisMF::Write(FabArray) 2 0.008474 0.009935 0.01268 0.35% FabArray::setDomainBndry() 41 0.006558 0.009925 0.01225 0.34% Castro::Castro() 1 0.0101 0.01099 0.01184 0.33% Castro::computeNewDt() 9 0.01001 0.01008 0.01012 0.28% Castro::initMFs() 1 0.006552 0.007182 0.007832 0.22% Castro::enforce_min_density() 62 0.005696 0.006471 0.007161 0.20% Other 199 0.02087 0.02546 0.0289 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8667 KiB 8669 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6756 KiB 6763 KiB 6770 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4535 KiB 4543 KiB 4582 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 197 KiB 220 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2800 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 214 KiB 225 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 42 KiB 67 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 69 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized