Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:27 UTC on 2025-05-27. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-4-gc846aaab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.095889906 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.359654909 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.326234914 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318876034 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.350188697 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.338235645 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303016518 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301231368 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299082404 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298481706 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298677997 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007473094 seconds Ending run at 05:18:30 UTC on 2025-05-27. Run time = 3.463760223 Run time without initialization = 3.206368625 Average number of zones advanced per microsecond: 0.818 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4622 ... 3.4631 ... 3.4638 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1613 2.2151 2.2658 65.41% Gravity::make_radial_gravity() 21 0.2967 0.3052 0.3163 9.13% check_for_negative_density() 10 0.0377 0.08597 0.1447 4.18% Castro::estTimeStep() 21 0.03218 0.07405 0.1119 3.23% Castro::initData() 1 0.03893 0.07376 0.1111 3.21% Amr::writePlotFile() 2 0.08857 0.09023 0.0913 2.64% FabArray::ParallelCopy_finish() 41 0.04728 0.06072 0.08905 2.57% amrex::Copy() 193 0.06502 0.07708 0.08401 2.43% FabArray::setVal() 143 0.06731 0.07296 0.08339 2.41% Castro::normalize_species() 62 0.04639 0.04785 0.05165 1.49% Castro::reset_internal_energy(Fab) 1008 0.04622 0.04811 0.05035 1.45% FabArray::ParallelCopy_nowait() 41 0.03651 0.04061 0.0432 1.25% StateData::FillBoundary(geom) 41 0.02975 0.03305 0.03554 1.03% FillPatchIterator::Initialize 41 0.02952 0.0321 0.03356 0.97% Castro::construct_new_gravity_source() 10 0.02322 0.0252 0.02898 0.84% Gravity::interpolate_monopole_grav() 21 0.02664 0.02759 0.02843 0.82% Castro::computeTemp() 63 0.01821 0.01942 0.02405 0.69% Castro::initialize_do_advance() 10 0.01446 0.01819 0.02086 0.60% Castro::initialize_advance() 10 0.005623 0.01046 0.0134 0.39% FabArray::Saxpy() 20 0.01149 0.01199 0.01234 0.36% MultiFab::contains_nan() 20 0.01007 0.01129 0.01225 0.35% VisMF::Write(FabArray) 2 0.00914 0.009665 0.0121 0.35% FabArray::setDomainBndry() 41 0.007801 0.009706 0.01101 0.32% Castro::construct_old_gravity_source() 10 0.006449 0.009019 0.009857 0.28% Amr::coarseTimeStep() 10 0.001762 0.007578 0.009745 0.28% Castro::initMFs() 1 0.006463 0.007016 0.007863 0.23% Castro::enforce_min_density() 62 0.005659 0.006183 0.006706 0.19% Castro::construct_new_source() 50 0.005344 0.00595 0.006215 0.18% Gravity::get_new_grav_vector() 11 0.00292 0.004018 0.005681 0.16% main() 1 0.003688 0.00418 0.004692 0.14% Gravity::get_old_grav_vector() 10 0.001845 0.002077 0.002463 0.07% Castro::finalize_do_advance() 10 0.00066 0.001177 0.001346 0.04% AmrLevel::FillPatch() 41 0.0007682 0.0008517 0.0009867 0.03% Amr::timeStep() 10 0.0001308 0.000192 0.0004362 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002872 0.0003044 0.0003318 0.01% Castro::clean_state() 62 0.0001463 0.000188 0.0002253 0.01% Castro::do_advance_ctu() 10 0.0001601 0.0001768 0.0002136 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001008 0.0001154 0.0001553 0.00% StateDataPhysBCFunct::() 41 9.118e-05 0.0001063 0.0001505 0.00% FabArray::ParallelCopy() 41 8.984e-05 9.614e-05 0.0001097 0.00% Castro::do_old_sources() 10 8.044e-05 9.492e-05 0.0001056 0.00% Amr::FinalizeInit() 1 4.153e-06 1.622e-05 9.537e-05 0.00% FillPatchSingleLevel 41 6.092e-05 6.819e-05 8.717e-05 0.00% Castro::do_new_sources() 10 5.139e-05 6.265e-05 7.825e-05 0.00% Castro::construct_old_source() 50 4.911e-05 6.623e-05 7.697e-05 0.00% Castro::Castro() 1 5.177e-05 5.993e-05 6.875e-05 0.00% Castro::apply_source_to_state() 20 4.288e-05 4.744e-05 6.197e-05 0.00% Castro::subcycle_advance_ctu() 10 4.364e-05 5.109e-05 6.097e-05 0.00% Amr::defBaseLevel() 1 4.314e-05 5.02e-05 5.969e-05 0.00% Castro::advance() 10 4.565e-05 5.002e-05 5.684e-05 0.00% Castro::construct_old_gravity() 10 3.563e-05 4.116e-05 5.531e-05 0.00% Castro::construct_new_gravity() 10 3.033e-05 3.777e-05 5.098e-05 0.00% Castro::check_for_nan() 20 2.663e-05 3.02e-05 4.421e-05 0.00% Castro::expand_state() 10 2.365e-05 2.835e-05 3.583e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.748e-05 2.216e-05 0.00% Castro::post_init() 1 1.404e-05 1.57e-05 2.061e-05 0.00% Castro::computeNewDt() 9 9.763e-06 1.039e-05 1.135e-05 0.00% Amr::initialInit() 1 1.341e-06 2.693e-06 1.009e-05 0.00% Amr::InitializeInit() 1 2.516e-06 3.228e-06 5.991e-06 0.00% Castro::computeInitialDt() 2 2.977e-06 3.983e-06 5.026e-06 0.00% Amr::init() 1 1.53e-06 1.935e-06 2.807e-06 0.00% Other 199 0.01035 0.0128 0.01436 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.462 3.463 3.464 100.00% Amr::coarseTimeStep() 10 3.194 3.194 3.194 92.22% Amr::timeStep() 10 3.174 3.177 3.182 91.87% Castro::advance() 10 3.158 3.159 3.162 91.30% Castro::subcycle_advance_ctu() 10 3.072 3.081 3.088 89.15% Castro::do_advance_ctu() 10 3.072 3.081 3.088 89.14% Castro::construct_ctu_hydro_source() 10 2.321 2.325 2.33 67.27% Gravity::make_radial_gravity() 21 0.3124 0.3209 0.3315 9.57% Amr::init() 1 0.2561 0.2568 0.2572 7.43% AmrLevel::FillPatch() 41 0.1852 0.2074 0.2242 6.47% Gravity::get_new_grav_vector() 11 0.215 0.2186 0.2237 6.46% Castro::construct_new_gravity() 10 0.1894 0.1939 0.1979 5.71% FillPatchIterator::Initialize 41 0.1562 0.1767 0.1973 5.70% Castro::construct_old_gravity() 10 0.1833 0.189 0.1959 5.65% Gravity::get_old_grav_vector() 10 0.1826 0.1883 0.1948 5.62% Castro::initialize_do_advance() 10 0.1605 0.1709 0.1772 5.12% Amr::initialInit() 1 0.1601 0.1616 0.1627 4.70% FillPatchIterator::FillFromLevel0() 41 0.1171 0.1349 0.1589 4.59% FillPatchSingleLevel 41 0.117 0.1347 0.1588 4.58% check_for_negative_density() 10 0.0377 0.08597 0.1447 4.18% Amr::InitializeInit() 1 0.06025 0.09511 0.1326 3.83% Amr::defBaseLevel() 1 0.06025 0.0951 0.1326 3.83% Castro::clean_state() 62 0.1168 0.1212 0.1259 3.63% FabArray::ParallelCopy() 41 0.08709 0.1015 0.1258 3.63% Castro::expand_state() 10 0.1015 0.1154 0.1236 3.57% Castro::initData() 1 0.04345 0.07768 0.1146 3.31% Castro::estTimeStep() 21 0.03218 0.07405 0.1119 3.23% Amr::writePlotFile() 2 0.102 0.1028 0.1036 2.99% Amr::FinalizeInit() 1 0.028 0.06646 0.1025 2.96% Castro::do_old_sources() 10 0.08897 0.09491 0.09743 2.81% FabArray::ParallelCopy_finish() 41 0.04728 0.06072 0.08905 2.57% amrex::Copy() 193 0.06502 0.07708 0.08401 2.43% Castro::initialize_advance() 10 0.06664 0.07464 0.08347 2.41% FabArray::setVal() 143 0.06731 0.07296 0.08339 2.41% Castro::computeInitialDt() 2 0.002375 0.04025 0.07555 2.18% Castro::do_new_sources() 10 0.06182 0.0661 0.07504 2.17% Castro::computeTemp() 63 0.06478 0.06784 0.0747 2.16% Castro::normalize_species() 62 0.04639 0.04785 0.05165 1.49% Castro::reset_internal_energy(MultiFab) 63 0.04652 0.04841 0.05065 1.46% Castro::reset_internal_energy(Fab) 1008 0.04622 0.04811 0.05035 1.45% FabArray::ParallelCopy_nowait() 41 0.03661 0.0407 0.04328 1.25% StateDataPhysBCFunct::() 41 0.02985 0.03315 0.03565 1.03% StateData::FillBoundary(geom) 41 0.02975 0.03305 0.03554 1.03% Castro::construct_new_source() 50 0.0292 0.03115 0.03507 1.01% Castro::finalize_do_advance() 10 0.01664 0.02611 0.03064 0.88% Castro::construct_new_gravity_source() 10 0.02322 0.0252 0.02898 0.84% Gravity::interpolate_monopole_grav() 21 0.02664 0.02759 0.02843 0.82% Castro::post_init() 1 0.02469 0.02579 0.02654 0.77% Castro::post_timestep() 10 0.01587 0.01688 0.01958 0.57% Castro::apply_source_to_state() 20 0.01155 0.01204 0.01239 0.36% FabArray::Saxpy() 20 0.01149 0.01199 0.01234 0.36% Castro::check_for_nan() 20 0.0101 0.01132 0.01228 0.35% MultiFab::contains_nan() 20 0.01007 0.01129 0.01225 0.35% VisMF::Write(FabArray) 2 0.00914 0.009665 0.0121 0.35% Castro::Castro() 1 0.01015 0.01095 0.01182 0.34% FabArray::setDomainBndry() 41 0.007801 0.009706 0.01101 0.32% Castro::construct_old_source() 50 0.006498 0.009085 0.009934 0.29% Castro::construct_old_gravity_source() 10 0.006449 0.009019 0.009857 0.28% Castro::computeNewDt() 9 0.008859 0.008881 0.0089 0.26% Castro::initMFs() 1 0.006463 0.007016 0.007863 0.23% Castro::enforce_min_density() 62 0.005659 0.006183 0.006706 0.19% Other 199 0.02038 0.02482 0.02881 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6600 KiB 6605 KiB 6608 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4430 KiB 4444 KiB 4455 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 198 KiB 225 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2735 KiB 2736 KiB 2738 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 236 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 44 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized